GBrowse Details

Vigan.03G212600.01

Basic Information:
Name: Vigan.03G212600.01
Multiple alignment
Variant Information
Position: Chr03:33871956..33876122 (+ strand)
Length: 4167
Functional Information:
Description: Similar to Alcohol dehydrogenase A. [V5N936, Phaseolus vulgaris]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Alcohol dehydrogenase superfamily, zinc-type (IPR002085)
Alcohol dehydrogenase, zinc-type, conserved site (IPR002328)
GroES (chaperonin 10)-like (IPR011032)
Alcohol dehydrogenase, C-terminal (IPR013149)
Alcohol dehydrogenase GroES-like (IPR013154)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:83.25,24.90,1199.56,13.23,1.17,33090.90,13.93,964.42
Arabidopsis thaliana homolog: AT1G77120.1
Automatic updates:
Name: NM_001255213 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max alcohol dehydrogenase 1-like (LOC100775490), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:33871956..33872060 (+ strand)
Length: 105
Type: five_prime_UTR
Position: Chr03:33872061..33872097 (+ strand)
Length: 37
Type: CDS
Position: Chr03:33872915..33873051 (+ strand)
Length: 137
Type: CDS
Position: Chr03:33873813..33873859 (+ strand)
Length: 47
Type: CDS
Position: Chr03:33874142..33874467 (+ strand)
Length: 326
Type: CDS
Position: Chr03:33874676..33874758 (+ strand)
Length: 83
Type: CDS
Position: Chr03:33874855..33874930 (+ strand)
Length: 76
Type: CDS
Position: Chr03:33875137..33875198 (+ strand)
Length: 62
Type: CDS
Position: Chr03:33875302..33875397 (+ strand)
Length: 96
Type: CDS
Position: Chr03:33875496..33875657 (+ strand)
Length: 162
Type: CDS
Position: Chr03:33875770..33875886 (+ strand)
Length: 117
Type: CDS
Position: Chr03:33875887..33876122 (+ strand)
Length: 236
Type: three_prime_UTR

>Vigan.03G212600.01 class=Sequence position=Chr03:33871956..33876122 (+ strand)
TTCCAACTTT TTTCCACTAT AAATAGAGTA TACATCTTCA ATGCAAAATC ATCCTCAAGT TTTCAATACT TAATTAATTC
CTCTTCAAAA AAAAAAATTG AAGCCATGTC TGCTACTGCT GGTAAAGTCA TCAGGTGCAG AGGTGAGCCA TCTCCATTTC
TGTTTTCTTC AATGTGCTTC TCTGGGTGAA GTTAGGGTTC TCATTTTTTT CTTGAAACCA AATAATAATA TGGCAAAATC
ATTACTTTGG TTAACTTTTA ATCTAGTTCT TTTAATTTTA TTCTGAGTTT TGGTGTTGGT TTTGATATAT TATTGATGTA
AAAATGTTCA AAGATGATGA AAGTGCAGAA ATCAAATTAA TAACTAAATT TTACTATCAG GAAAAAGTTG TCATATAATT
GAGAAAACTC TATGCTGGAG AATGTATTGT ATAAGATAAA ATATTAAAAT AAATAGAAAC ATCTAGAGGA TGAAACTCTT
TTAGTCAACA GTGTGGAGAG ATTTAAACTG AAACATTATA ATATGTGTTT AAGTGAGTTT ATTTATAACT TTTCAAACTT
TCTCATCTTT TTAATAATGA GTCTTGTAAA GCCAAAATTT ATGACTATGG AGTTTGTCTT TTAATATCTT AAGATTATAA
TATCTGTGTA TTTATGTTTT TTTAAATGTC AGATAATAAG TAAAATACTA TAAATAGTGA AGACAATTTC TCACTTTTGA
AGTTGATTCT GAAAAAATGA TAAATTATAC TTACACTAAC TTTTTGATAC AATATCAAAA TTTATTGTAA TGAATTTTGT
TGATGTTATT AAATCATCCA TAAAATTATT CATAAACATT TAATTTTATG TTTGAAATAT ATGTGAAAAG ATGTATTAAA
AACTATATAT CAACTAAAAA TAAGATGTTA TTAAAAAGTT GGATACAATA TATTTAGTTT AGTTTTATGT GAAATGCAGC
TGCGGTGGCA TGGGAACCAG AGAAGCCATT GTCGATAGAG ACCATAGAAG TGGCACCACC TGGGAAAGGT GAAGTGCGTT
TGAAAATCCT CTTCAACTCC CTTTGCCGTA CTGATGTTTA CTGGTGGGAT GTTAAGGTAA CTCTTTCTCT TTTTCATTTT
CTTTTTCTAC TATTATTTCT TATATCTATA AAATCCCAAA ACCAGCTTCT CAAAGTCAAA GCAAGTAATC AATAAAATCT
ATCTCACCTT TGTTATAAAA AAATAAACAT TTTTGACATA TCTTAAATTT GAGCACGTGG GCGACAATGA TTGCGAAACG
TGGCAAATCG TCACATGCAA TGGATAATTA TTCGGAGTGA AAAGTAGGAC ATACCCTCTC AAAAAAGCAA CTTTAGACCT
CAATGATTAA GATATTCATT CACTCAAAAC TTGTTTTATG TTATTGTAAT TGTATGGGTT TTCAATTTAT TTTGTATCGA
TCTTATTATT TCATAACACT TTCACTGTAT TCTTATAATT TTCACTTTAA TACAAAGACT TTATAAAATT ATATTCTGAT
TAATTTTGTA TTTAACTATG GACAAAAAAA TAAACACTCA AAATAAATAA AAAGATTTTT TATTATTTAG CATTTGATTT
AAAACTCCGC ATGTAACAAT TTTTTTTTAT ACAACATAAT TAAATTAGTG AACCTATTTA TAATCTTGAA ATGTAATTTT
AAAACTCAAG ATGAATTTAA CTTAAAAGAA ATTGTGTATA CTTTTATTTA TTTTATTGAA AAGATCTATT TTAAGGTACT
AAAATAAAGA TGTACTAAAT CTTACATTAC AAGTTATGAA TTGACTGTTG GTGTTTCTGT CTGCTAGTAT TTATGTCTGT
TTCGTTTTGC TTTTCAGGGT CAGAATCCGC TGTTTCCTCG TATTTTAGGT CATGAAGCTT CAGGGTATGA TGTTACATTC
GTTGAAACTA TTTCTCAAGT GATAATTAAC TAAATATATA TATTTTTAGT GGATACGAAT AAAGATAAGA TGTATACAAG
GTTTTCACAT GAAACGAGTT ACAATTTTTC TAATAAGTTC ATCATGTCAT TGATCTAAAA TGTGTAACAA GAACGAAAGC
AGTGGTTAAA ATAGTATCAT TGGACCATGT TTATTATAAA TCTTATGAAG AAAAATGAAA AGTTAACAGA TTTGATGGTG
GTTATGTGAA TGAATGAATG AACTAGGATT GTGGAGAGCG TGGGTGAGGG TGTGACCGAT CTGAAACCAG GAGATCATGC
ACTCCCAATA TTCACTGGGG AGTGTGGGGA ATGCAAATAT TGCAAATCGG AAGAGAGCAA CCTGTGTGAG CTGCTAAGGA
TCAACAGTGA CAGAGGAGTT ATGCTGAGTG ATGGCAAAAC AAGGTTCTCC AAAAATGGAC AGCCCATTTA CCACTTTCTG
GGAACCTCCA CATTCAGTGA ATACACTGTT CTTCATGCTG GCTGTGTTGC CAAGATCAAC CCTGCTGCTC CACTTGACAA
AGTTTGTGTT GTCAGTTGCG GATTTTGCAC AGGTTTGTCA GATATGTACT AATTTCAACT TCATATTCTC TGTCAAGTTT
TTAGTTACCA CATCAAATTC CGCATAGGAA TAGTAGTAAG AACTCTAGAG AATTTAAATT CAATAATTTT GTGTTTTGTG
GAACCACATA ATTCTACACT TTAAACTTAT AATGCTAACA ATGTGGAATT TATTAATGTG TATCGATTTT GTACATGCAG
GTTTTGGTGC TACTGTAAAT GTTGCAAAAC CAAAGCCTAA TGATACTGTT GCTGTCTTTG GTTTGGGAGC TGTTGGTCTT
TCTGTATGTT ATATATCCTT CACTGCTTCT TCTTTTTTTC CTGCAATAAT GTAGAAAACT ATATTGGCTA CAGTTCTTAC
CTTGTACTCT GCATTCTAGG CCTGTGAAGG AGCAAGGGTT TCTGGTGCAT CGAGAATCAT TGGGGTTGAT TTACTCTCCA
GTCGGTTTGA ACAAGGTAGA TTCAATTAGG ACAAGACATA GATGTGAATG ATGCCTTTTA AGTGTTTGTG ATATTGTTCC
TTAACGAGTG TTATAGTTTT TACCTTGACA GGTAGTGCCT TAAAGAATTA TTAAATAGAG AATAGTATAA ATTTTGTCCA
TTTAATTATG ATTCAGATTT AAGTTTATGA AATGTCTAAT TACATTGTTA TTCTTGGTCA GCCAAAAAAT TTGGGGTCAC
TGACTTTGTG AACCCCAAAG AGCACAACAA ACCAGTTCAA CAGGTTAGTT CAGACTATGC AGACAAGTAG TTCCAACTTT
CACTTCATTT AAATATTCTT CATTTCATAG ACTAATTCTC TATCTTGCTG AGATGTGGCA CTAAAGGTAA TTGCTGAAAT
GACTGGTGGA GGAGTCGATC GTGCTGTTGA ATGCACTGGA AGCATCCAAG CCTCGATCTC AGCATTTGAA TGCACTCATG
ATGTATTTTC CAGACCCCAG AGCTATTATT CTTGTTTCTA GCTACATCTG TATGAAGTTG ATATTGTAAT TAAACATGAA
CTTCAAATAT TTCTTGTCAG GGTTGGGGTG TTGCTGTACT TGTTAGTGTT CCACACAAGG ATGCTGAATT CAAAACTCAT
CCAATGAAGT TCATGGAAGG AAGAACTCTG AAGGGTACCT TCTATGGCCA CTTCAAACCC CGCACTGATA TTCCTGGTGT
TGTGGAGAAG TACCTGAACA AGGTAATCAT AGAACTAGAT AATGTATTTA GTCATCTATT AATATGAAAT AGTAAGTTGA
AGATTGTTGA ATAATTTGTG CATGAAATGA GAATGAGTTT TAATGATAAT GCAGGAGCTG GAACTGGAGA AACTTATCAC
TCACAGTGTG CCATTCTCAG AGATCAACAC GGCATTTGAC CTTATGCTGA AAGGGGAGGG AATAAGGTGT TTGATCCGCA
TGGAAGAGTG AACGAGTTAT GTTCTCTGGT GTGAGAACAG TGTTTGTCTG TGATGTGAAA AAAGAGAGTT GAAGAATAAA
TTTAGCACGT AATTCTGTTC TTGAATCTGT GCTATGTGAG TGTGTAAAGT AGTAATTGGA GGTGATGACT TTCTTGGTCA
TCTTCCTGCC TCTGTTACTT CTTATGCGAA TGGTGTGTCG TGTAACTTTG TTCTGTTTTC TATTATATAT TTATATCTAT
ATTTTCA

>Vigan.03G212600.01
TTCCAACTTT TTTCCACTAT AAATAGAGTA TACATCTTCA ATGCAAAATC ATCCTCAAGT TTTCAATACT TAATTAATTC
CTCTTCAAAA AAAAAAATTG AAGCCATGTC TGCTACTGCT GGTAAAGTCA TCAGGTGCAG AGCTGCGGTG GCATGGGAAC
CAGAGAAGCC ATTGTCGATA GAGACCATAG AAGTGGCACC ACCTGGGAAA GGTGAAGTGC GTTTGAAAAT CCTCTTCAAC
TCCCTTTGCC GTACTGATGT TTACTGGTGG GATGTTAAGG GTCAGAATCC GCTGTTTCCT CGTATTTTAG GTCATGAAGC
TTCAGGGATT GTGGAGAGCG TGGGTGAGGG TGTGACCGAT CTGAAACCAG GAGATCATGC ACTCCCAATA TTCACTGGGG
AGTGTGGGGA ATGCAAATAT TGCAAATCGG AAGAGAGCAA CCTGTGTGAG CTGCTAAGGA TCAACAGTGA CAGAGGAGTT
ATGCTGAGTG ATGGCAAAAC AAGGTTCTCC AAAAATGGAC AGCCCATTTA CCACTTTCTG GGAACCTCCA CATTCAGTGA
ATACACTGTT CTTCATGCTG GCTGTGTTGC CAAGATCAAC CCTGCTGCTC CACTTGACAA AGTTTGTGTT GTCAGTTGCG
GATTTTGCAC AGGTTTTGGT GCTACTGTAA ATGTTGCAAA ACCAAAGCCT AATGATACTG TTGCTGTCTT TGGTTTGGGA
GCTGTTGGTC TTTCTGCCTG TGAAGGAGCA AGGGTTTCTG GTGCATCGAG AATCATTGGG GTTGATTTAC TCTCCAGTCG
GTTTGAACAA GCCAAAAAAT TTGGGGTCAC TGACTTTGTG AACCCCAAAG AGCACAACAA ACCAGTTCAA CAGGTAATTG
CTGAAATGAC TGGTGGAGGA GTCGATCGTG CTGTTGAATG CACTGGAAGC ATCCAAGCCT CGATCTCAGC ATTTGAATGC
ACTCATGATG GTTGGGGTGT TGCTGTACTT GTTAGTGTTC CACACAAGGA TGCTGAATTC AAAACTCATC CAATGAAGTT
CATGGAAGGA AGAACTCTGA AGGGTACCTT CTATGGCCAC TTCAAACCCC GCACTGATAT TCCTGGTGTT GTGGAGAAGT
ACCTGAACAA GGAGCTGGAA CTGGAGAAAC TTATCACTCA CAGTGTGCCA TTCTCAGAGA TCAACACGGC ATTTGACCTT
ATGCTGAAAG GGGAGGGAAT AAGGTGTTTG ATCCGCATGG AAGAGTGAAC GAGTTATGTT CTCTGGTGTG AGAACAGTGT
TTGTCTGTGA TGTGAAAAAA GAGAGTTGAA GAATAAATTT AGCACGTAAT TCTGTTCTTG AATCTGTGCT ATGTGAGTGT
GTAAAGTAGT AATTGGAGGT GATGACTTTC TTGGTCATCT TCCTGCCTCT GTTACTTCTT ATGCGAATGG TGTGTCGTGT
AACTTTGTTC TGTTTTCTAT TATATATTTA TATCTATATT TTCA

>Vigan.03G212600.01
ATGTCTGCTA CTGCTGGTAA AGTCATCAGG TGCAGAGCTG CGGTGGCATG GGAACCAGAG AAGCCATTGT CGATAGAGAC
CATAGAAGTG GCACCACCTG GGAAAGGTGA AGTGCGTTTG AAAATCCTCT TCAACTCCCT TTGCCGTACT GATGTTTACT
GGTGGGATGT TAAGGGTCAG AATCCGCTGT TTCCTCGTAT TTTAGGTCAT GAAGCTTCAG GGATTGTGGA GAGCGTGGGT
GAGGGTGTGA CCGATCTGAA ACCAGGAGAT CATGCACTCC CAATATTCAC TGGGGAGTGT GGGGAATGCA AATATTGCAA
ATCGGAAGAG AGCAACCTGT GTGAGCTGCT AAGGATCAAC AGTGACAGAG GAGTTATGCT GAGTGATGGC AAAACAAGGT
TCTCCAAAAA TGGACAGCCC ATTTACCACT TTCTGGGAAC CTCCACATTC AGTGAATACA CTGTTCTTCA TGCTGGCTGT
GTTGCCAAGA TCAACCCTGC TGCTCCACTT GACAAAGTTT GTGTTGTCAG TTGCGGATTT TGCACAGGTT TTGGTGCTAC
TGTAAATGTT GCAAAACCAA AGCCTAATGA TACTGTTGCT GTCTTTGGTT TGGGAGCTGT TGGTCTTTCT GCCTGTGAAG
GAGCAAGGGT TTCTGGTGCA TCGAGAATCA TTGGGGTTGA TTTACTCTCC AGTCGGTTTG AACAAGCCAA AAAATTTGGG
GTCACTGACT TTGTGAACCC CAAAGAGCAC AACAAACCAG TTCAACAGGT AATTGCTGAA ATGACTGGTG GAGGAGTCGA
TCGTGCTGTT GAATGCACTG GAAGCATCCA AGCCTCGATC TCAGCATTTG AATGCACTCA TGATGGTTGG GGTGTTGCTG
TACTTGTTAG TGTTCCACAC AAGGATGCTG AATTCAAAAC TCATCCAATG AAGTTCATGG AAGGAAGAAC TCTGAAGGGT
ACCTTCTATG GCCACTTCAA ACCCCGCACT GATATTCCTG GTGTTGTGGA GAAGTACCTG AACAAGGAGC TGGAACTGGA
GAAACTTATC ACTCACAGTG TGCCATTCTC AGAGATCAAC ACGGCATTTG ACCTTATGCT GAAAGGGGAG GGAATAAGGT
GTTTGATCCG CATGGAAGAG TGA

>Vigan.03G212600.01
MSATAGKVIR CRAAVAWEPE KPLSIETIEV APPGKGEVRL KILFNSLCRT DVYWWDVKGQ NPLFPRILGH EASGIVESVG
EGVTDLKPGD HALPIFTGEC GECKYCKSEE SNLCELLRIN SDRGVMLSDG KTRFSKNGQP IYHFLGTSTF SEYTVLHAGC
VAKINPAAPL DKVCVVSCGF CTGFGATVNV AKPKPNDTVA VFGLGAVGLS ACEGARVSGA SRIIGVDLLS SRFEQAKKFG
VTDFVNPKEH NKPVQQVIAE MTGGGVDRAV ECTGSIQASI SAFECTHDGW GVAVLVSVPH KDAEFKTHPM KFMEGRTLKG
TFYGHFKPRT DIPGVVEKYL NKELELEKLI THSVPFSEIN TAFDLMLKGE GIRCLIRMEE *