GBrowse Details

Vigan.03G211800.01

Basic Information:
Name: Vigan.03G211800.01
Multiple alignment
Variant Information
Position: Chr03:33667341..33671770 (- strand)
Length: 4430
Functional Information:
Description: Similar to floral homeotic protein PMADS 2-like. [XP_004498359.1, Cicer arietinum]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Transcription factor, MADS-box (IPR002100)
Transcription factor, K-box (IPR002487)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.32,0.00,215.32,0.37,0.09,0.00,0.00,1.54
Arabidopsis thaliana homolog: AT5G20240.1
Automatic updates:
Name: NM_001248456 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499997 (LOC100499997), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254097 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max floral homeotic protein GLOBOSA-like (LOC100817554), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:33667341..33667546 (- strand)
Length: 206
Type: three_prime_UTR
Position: Chr03:33667547..33667681 (- strand)
Length: 135
Type: CDS
Position: Chr03:33669467..33669511 (- strand)
Length: 45
Type: CDS
Position: Chr03:33669773..33669802 (- strand)
Length: 30
Type: CDS
Position: Chr03:33670276..33670375 (- strand)
Length: 100
Type: CDS
Position: Chr03:33670481..33670542 (- strand)
Length: 62
Type: CDS
Position: Chr03:33671071..33671137 (- strand)
Length: 67
Type: CDS
Position: Chr03:33671338..33671636 (- strand)
Length: 299
Type: CDS
Position: Chr03:33671637..33671770 (- strand)
Length: 134
Type: five_prime_UTR

>Vigan.03G211800.01 class=Sequence position=Chr03:33667341..33671770 (- strand)
AGGAGACCAA TGGTTAAGAA AGTGCGACAA CTAACAAAGC CAAATCAAAC ATCATGTAAA AGTTACTTGG GTTGGCTTTG
TCACTTTTCC ACTGTGCCCC TAAGAAAGTT CCTTATCCTC AAACCAGTTA TGTCATGTTG TTACCTCTTC CCTTACTTTT
ATCTTTGCAA CCCTCTCATC TTTTCCATTT CACAAGCAAG AAAAACCAGA GAACATTGAA GAGAGAAGAG AAAAAAGTGG
GAGAAATGGG GAGGGGAAAG ATTGAGATCA AGAGGATCGA GAACTCGAGC AACAGACAAG TTACCTACTC CAAGAGAAAG
AATGGGATCC TAAAGAAGGC CAAGGAAATC ACTGTTCTAT GTGATGCACA AGTTTCCCTT ATCATCTTTG CTGCATCTGG
GAAGATGCAT GACTACATCA GCCCTTCCAC CACGTAAGGA TCTTAACGTT TGTGTACAGT TTCTTTTCTT CTTCTTCTTG
TGTTTCTAAT GTCAAGTTTG TTCTTTGTTT TTTATTTCTG TCTTGATTCT TAAAGGGTAG TTTTATGAAG CCCAAGTGCA
TGAAAATAGT ACTATTTGAT TGATCTGCAA ATTAAAGGTC TTAACTTTTT GGTTTTTGTT TTGGTTGAGG AAGTTTGATT
GACATATTGG AGAGGTACCA CAAGACCTCA GGGAAGAGGC TTTGGGACGC CAAGCATGAG GTTGGTTAAT ATATGGCTCC
TATTTTGTGT TTGCTTTCGA TTTGTCCAAA GGAAAATATG ACCTACTTTT GCTAAAAATA TGCTATGAAA CATGAACTAT
GAATTCTCTG AGTAGATCTA AATTTGGGTT GTACCTTCTA CATATTATAT TGTTTTTTAT TATTATCAAA AAAGAGAAGC
AGGAACTACA AGAAATGTAA CATCTATGAA CAGATCTGGC AGTAAAACGT TACTCACTTG CTTACTTTTT TCCTTGCAAA
AAAATGAAAC AACAACTGAA CATATATATG TGTAGGAATA AAGACTTTAT ATGCAAATTA ACGTCTTTCA CACTTGATGG
ATCTCTCTAT TGTCTGACAT TACAACCACC ATAGAGAGTC AGATCTACTC CAAATAGCCC TTTCTTTTGA GAATTTCTGG
CTTTTTGCAA CATCGTACTC TCCCTTCTCT TTTCTATGTT TATTTTTCTT GAAGAAAAGA CAACTAGTGT GTTTTAGGGT
TTGTGACTAC TAACGTTGTT GAACTCAGAA CCTAAACGGC GAAATTGAGA GACTCAAGAA AGAGAATGAC AGCATGCAAA
TTGAGCTCAG GTATATTATT ATAACATAAC ATAAATTGCA TATTTTAAAA CCATTTAACG TTCTTATTTC TCTCTCTTTC
TCTCTCTTCA TCTTTCACCA ACTATTTCAT TACAGGCACT TGAAGGGGGA AGATATAAAC TCTCTGAACT ACAAGGAACT
CATGGCCTTA GAAGATGCCT TAGAAACTGG TCTCGTCAGT GTTCGTGAGA AACAGGCAAA TGAATCTTCA AAAAGCTAAA
TTTTTAAGTT TTCTGCATCT TCTATTCCAT GTCATTTAAA TACTAGCAAA ACATGTAGAA TTTGTTGAAC TAAACTTCTC
CCTAAATACT AGCATGAAAA TGAAAAGAAA AAATAAATAA AACAAACTCT TCAATAAAAC AAAAACTAAT TCATGAGTGC
AATTTATTAT ATTTTGGATT AGCGTGAATT ATTTTCTACA AAAATACTAT GTGCAAAACA GTTTTACTTC ATTGAATTAC
TTCTTTTGTT TTTCTTTTTA TTCTCTTTTC TTATATATGT TTATAAAGAA ATTCATTTAA ATATACCATA ATATATAGCT
TCTATTGTTA AGCAATGTAT TTAGTGTCCA TGGTAGCTAA TTTAGTTTAT TTTGCTCATT GAAAAATCAA ATGGAAGCCA
AAATCAAAAG ATTATTATCT GACAGATGAA CTTGTTTTTT CTCTGCAGAT GGATGTGTAC AGGATGTTCA GGAGAAATGT
ATGTTTAATT GAAATCTTTG ATTTATGCTA TTGAAATAAT ATAATTATAT ATATATATAT ATATATATAT ATATATATAT
ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
ATATATATAT ATATATATAT ATATGTGTGT GTGTGTGTGT GGGCGCATAT ACTCAATGCA AAACGAACTT TATCATTTTT
TCTTCTCATT GTTGTTCAGG ACAAGATCTT GGAGGAGGAG AACAGGGAAC TTAATTTTCT CTGGGTACGT AATACATTAC
ACAAACCTAT ACTACTTAGA ACTTTTGTCA TTTTGAGAAT TCAAGGTTTG GCAATCCTTT TTTGTAGTCA CATCTGATAA
TACATAATTA ACTGTAAAAT TATCTCATCA ACTCATTGAA TAAATTAAGA GAGGATTTAA TAATGTTTGT TTAGGCAAGG
CACACATTAT ATAGAGTTGT TCTAAAGTGA GGTTATGGTT AAGAAACTTT AATATTGAGA AATTGAATGA AAAGGAAGTT
CATGTGTCAC CACATTTATG GCCGTAATCT GGTTTTAATG TGTCCAAAAA CTTTTATGTT GTGACCCCAA TGAGTTATAG
ATTACAATTT TTTTAGAGAC TTATAGATTA CCATTAAAAC CACGATTTAT ATGTGATAAC CATTGTATTA CCATATAGGG
AGTTTACTTA AATAAAAAAA ATAAACTAAT ACATTCTGCT TTTGTTGTTT TATTTTGTCC AATATCCCCA CCTCAAAAAC
AGTATATAAG TGAATAAAAG AAGATAAAAC CTTTAATGTG GTTTTCTTCA ATGTCATGTA TTAGATTCGA CTAGTGTTCT
ATTATAGCCT TACAAAAGGA CTGTCTAAAT ATTGATCAAA ATCTATGGAA ACAGTTGTAC AAAATTAAAA GATAACTTTT
ATTTTGAAAA ATATCATAAC TAATAAAACT ATATATCATA TCAAAACAGT GAAAATTTTG CTCATGCATG GAAAACTTCA
AGATTACCAA AAGTATTAGT ACAAGAATTA CCTTCCCAAA AATGAGAGTA AAACACAATG TAAAGACATT TCTTTCATCT
AAATCTTAAA TTCCATGAAA CCAAATTATC ATTTTGAAAA TTTTGAATAA GATAGGAGGC ACACTTAATT GACAAACTTT
ATCATCCCTT AATATTAACA GCAATTAGAT TAAAAACTTT ATTGCATAAA AAATGGAATA CATAATTATT CACTACATAG
TGGATGCCTA CTTGTATATG TAATATTTCT TCAAATGGGT CAATGGAAAA TAAATTGTTT AAAGATTATG ACTTACCGAT
CTTGAAGCGT AATACGATAG TTCTAAAGTT AGAACTTCAT TTGTAAACTC GTGTAGTTTA TTTGCTACTC CATTAACTAA
ATTTTATTAC CCAATTTAAA CGTTAGCAAT ATTAAATTTT AGATAATATT TATATTACCA TGGTCCAATA TATTAGGTTT
ATAAACCGTG CTCTATCTCT CCAGCAATTT TTAAATGTTT CCATATAGAA ATACACAAGC AGCATTTGCA TATTGCAATT
TTTGACATGG TATTTTTTTT TCTTCATTTA GTAAAACTGT TGTCAACTTC ATGTTTAAGG AATAGTTTCA TAATCGTGGA
AATTGAAAAT ATTAAAAGAG TGTTTTGTTG TCATTTTGAA CATAAAAACC ATATATCAAT CCTTTTAATA ATTTTTAATA
TTTTGAAAAT TATTCTTTTA ATTATAAATT TATATAAAAG ATCAAGACAC CATTTGTAAC CTAAAATATT AAGACAACAA
ATCTATGAAT TTTTTTTTTT ATGATAGTAA AACTTGGTCC ATCTTACTTC TCTTGAATTC TTAACAATAA CTTTAAATAT
CCTGCATAAT ATACGTAAAT GAAGTAAAAT AAATAGGAAA AAGAATCACC CATTCATGGC ATATTTTTAT TGCATAACAG
TCCAATTTAT GTTTTGTTTT TCTCTTATGA AAAAGGTTAA AATTTGTGCA TGGCCATTTA ATTGATGGTG TATTGTGTTA
TTTGAACAGC AACAACGTTT GGCAGTGGAA GGAGCAAGAG AAGTGGAGAA CGGGTTTGAT CAGAGTGTGA GGGATTACAA
TTCCCATATG CCATTTGCCT TTCGTGTGCA GCCAATGCAG CCAAATCTTC AAGAAAGGAT CTGATATAAT ACTCTGTCAA
ATCAAAACTC CATCTTGCTG TTTTCATCAC AATCTTATGT GCATGTCACA ACTTTTTAAG TATGTTTTGG TATCTGTTTG
TTGCTAATAA ACAACTCAAT TTCACTTCGT CATTCAACTC ACTCTTATGC GTCTCCGACT TTGTCTCCTG TTTTGTGTGT
TTGTCTCACT ATTATATATA CTTTCGCCTC 

>Vigan.03G211800.01
AGGAGACCAA TGGTTAAGAA AGTGCGACAA CTAACAAAGC CAAATCAAAC ATCATGTAAA AGTTACTTGG GTTGGCTTTG
TCACTTTTCC ACTGTGCCCC TAAGAAAGTT CCTTATCCTC AAACCAGTTA TGTCATGTTG TTACCTCTTC CCTTACTTTT
ATCTTTGCAA CCCTCTCATC TTTTCCATTT CACAAGCAAG AAAAACCAGA GAACATTGAA GAGAGAAGAG AAAAAAGTGG
GAGAAATGGG GAGGGGAAAG ATTGAGATCA AGAGGATCGA GAACTCGAGC AACAGACAAG TTACCTACTC CAAGAGAAAG
AATGGGATCC TAAAGAAGGC CAAGGAAATC ACTGTTCTAT GTGATGCACA AGTTTCCCTT ATCATCTTTG CTGCATCTGG
GAAGATGCAT GACTACATCA GCCCTTCCAC CACTTTGATT GACATATTGG AGAGGTACCA CAAGACCTCA GGGAAGAGGC
TTTGGGACGC CAAGCATGAG AACCTAAACG GCGAAATTGA GAGACTCAAG AAAGAGAATG ACAGCATGCA AATTGAGCTC
AGGCACTTGA AGGGGGAAGA TATAAACTCT CTGAACTACA AGGAACTCAT GGCCTTAGAA GATGCCTTAG AAACTGGTCT
CGTCAGTGTT CGTGAGAAAC AGATGGATGT GTACAGGATG TTCAGGAGAA ATGACAAGAT CTTGGAGGAG GAGAACAGGG
AACTTAATTT TCTCTGGCAA CAACGTTTGG CAGTGGAAGG AGCAAGAGAA GTGGAGAACG GGTTTGATCA GAGTGTGAGG
GATTACAATT CCCATATGCC ATTTGCCTTT CGTGTGCAGC CAATGCAGCC AAATCTTCAA GAAAGGATCT GATATAATAC
TCTGTCAAAT CAAAACTCCA TCTTGCTGTT TTCATCACAA TCTTATGTGC ATGTCACAAC TTTTTAAGTA TGTTTTGGTA
TCTGTTTGTT GCTAATAAAC AACTCAATTT CACTTCGTCA TTCAACTCAC TCTTATGCGT CTCCGACTTT GTCTCCTGTT
TTGTGTGTTT GTCTCACTAT TATATATACT TTCGCCTC

>Vigan.03G211800.01
ATGTTGTTAC CTCTTCCCTT ACTTTTATCT TTGCAACCCT CTCATCTTTT CCATTTCACA AGCAAGAAAA ACCAGAGAAC
ATTGAAGAGA GAAGAGAAAA AAGTGGGAGA AATGGGGAGG GGAAAGATTG AGATCAAGAG GATCGAGAAC TCGAGCAACA
GACAAGTTAC CTACTCCAAG AGAAAGAATG GGATCCTAAA GAAGGCCAAG GAAATCACTG TTCTATGTGA TGCACAAGTT
TCCCTTATCA TCTTTGCTGC ATCTGGGAAG ATGCATGACT ACATCAGCCC TTCCACCACT TTGATTGACA TATTGGAGAG
GTACCACAAG ACCTCAGGGA AGAGGCTTTG GGACGCCAAG CATGAGAACC TAAACGGCGA AATTGAGAGA CTCAAGAAAG
AGAATGACAG CATGCAAATT GAGCTCAGGC ACTTGAAGGG GGAAGATATA AACTCTCTGA ACTACAAGGA ACTCATGGCC
TTAGAAGATG CCTTAGAAAC TGGTCTCGTC AGTGTTCGTG AGAAACAGAT GGATGTGTAC AGGATGTTCA GGAGAAATGA
CAAGATCTTG GAGGAGGAGA ACAGGGAACT TAATTTTCTC TGGCAACAAC GTTTGGCAGT GGAAGGAGCA AGAGAAGTGG
AGAACGGGTT TGATCAGAGT GTGAGGGATT ACAATTCCCA TATGCCATTT GCCTTTCGTG TGCAGCCAAT GCAGCCAAAT
CTTCAAGAAA GGATCTGA

>Vigan.03G211800.01
MLLPLPLLLS LQPSHLFHFT SKKNQRTLKR EEKKVGEMGR GKIEIKRIEN SSNRQVTYSK RKNGILKKAK EITVLCDAQV
SLIIFAASGK MHDYISPSTT LIDILERYHK TSGKRLWDAK HENLNGEIER LKKENDSMQI ELRHLKGEDI NSLNYKELMA
LEDALETGLV SVREKQMDVY RMFRRNDKIL EEENRELNFL WQQRLAVEGA REVENGFDQS VRDYNSHMPF AFRVQPMQPN
LQERI*