GBrowse Details

Vigan.03G181500.01

Basic Information:
Name: Vigan.03G181500.01
Multiple alignment
Variant Information
Position: Chr03:27426990..27431132 (- strand)
Length: 4143
Functional Information:
Description: Similar to bet1-like protein At4g14600-like. [XP_004490412.1, Cicer arietinum]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Target SNARE coiled-coil domain (IPR000727)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.16,10.88,23.19,18.23,27.19,14.21,20.08,20.22
Arabidopsis thaliana homolog: AT4G14600.1
Automatic updates:
Name: NM_001249899 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500358 (LOC100500358), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251108 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306642 (LOC100306642), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:27426990..27427372 (- strand)
Length: 383
Type: three_prime_UTR
Position: Chr03:27427373..27427534 (- strand)
Length: 162
Type: CDS
Position: Chr03:27428459..27428515 (- strand)
Length: 57
Type: CDS
Position: Chr03:27430679..27430796 (- strand)
Length: 118
Type: CDS
Position: Chr03:27430872..27430933 (- strand)
Length: 62
Type: CDS
Position: Chr03:27430934..27431132 (- strand)
Length: 199
Type: five_prime_UTR

>Vigan.03G181500.01 class=Sequence position=Chr03:27426990..27431132 (- strand)
GATGAACCCA GTTGCCTGGC ACAATCCTAT TTCTTTCCTT CTTCCTTCCA TTTTCTTCTC CACTAAGATT TCTCCCTCAT
TAATTCTTCA ACAGCTTAAC TCCTCGACCT AATTTTTCAG TCTGTGCAAC TCATTCCCCT TTAAACATTC AAACAATCAA
AACCCACCAA CCCAATTGGG TTTCTTTTGA TTTCCCACAA TGGCCGCCAA TTCCCACAGA GTGGGTTCTT CCTACGGCGG
CGCCGCCTCT TACAGATCAA GGTATGTGTG TATTCTTATG TGTGTCTTCG AATTCATCAT ATCTGTGCAG TTAATTGTAT
GTGATGGATA TTGCAGAGAT GGGCTTAGCA CTCGACCGGT TGGTGCCTCT GAGGAGATCC AATTACGAAT TGATCCCATG
GACTTGGACG AGGAAATCAC CGGTCTTCAT CGCCAAGTTA GAAGGTTGAA ACATGTATGT ATCTCCCACC ATTTTTTAAT
TTCTTATTTT ATTTATTCAT TTTGCCCCTG TTATTTCTTT GGTTTTGTTG GGCATGTGTG AAATTTCGAA ATTGAACAAT
TTAGAAATTC GTTTAGACCT GATCGATCAG AATCAGGGAG TGGATTGAAC TGGACTGGAC TGGACGCATT TGAAGAAATG
GAATTTGATA TGATTCATTG TTTTTTAGGG AAATTGAACT CTTTTCTATT TAAACAAGTA GATGTTGATT GAAGACTTGA
AGGTGTTACA TGCTAATGAA AACTTAGCAG AGAGCAAGGT TTTGAAAAAT GGTCCGTTGC TGCAATTTTA ACTTTAATGT
CAAGGTTTGA GGTATTTGGG GTGGTCACAA TTGCAGCTGC ATCGGTCACA TTTTTCAGTA TTTTCCTGCA GCATCGCAGG
TCCTGATAAA ATTGAATATT TGACAACCAC TGCAGTTTAA AACTTGGTAG AGAGCACCTG GATTGGTCAT GTTTAAAAGT
CAAGATTTGA GATTAAATAA GAATAGCAAA ATTTTGGGTA GGGGACAACC TTTTTTCAGC ATAAATTAAC CGGACGATGA
GCTACAGCTA ATAGTGATTT CTCTTGTTCT ATGATTCTTT GTTTTTTGTC AAGTTGTAGG TAATCCCCTA TTGGCTAAAA
TGTGGTTCTT GTATCATGGG GGTCACCATT TCACTAGTTT TCCTTGCTCT TTGGTCGTGC ATCAGCTCCA TACCTTGGAT
TTTTTTTTTA TTCTCTAAAT GAGAAATTTA CCTTTTTTAA AAAAAAAAAT CATTCTCTGT GCTACTTTAA TTTTTCTGAA
TTTTATGATA ATGATAATAG GTTGTGAACT AAGTTTTGAT ATGCAACTGT GGTCGCGATC ACAATCTTGC CTCAGTCTTT
GAAATATCAA AAAATTACTA ATAAATGCAG CTGATGTGGG GGAAACCTAA AAAATTATGA TGTAATTGCG GTCGTAGACC
ATCTTTTAAA GCCTTAGTTG TGGAAACAAC CTGGTGTTGT TAGATAGCCA CTATATGGTG CTTTTGTGTT GCAGTTTTCC
TTGATATACG ATTGCCATTC TGTTTGCCTA TTGCAGCCTT TGTAGGTGTT GTGGTTGTGG CATGCATCCT GTATCCTCTT
GTCATCTTCA GCAAGTCTCT GGCTAATTGA ACATTTTGGT TAATATTGTG TCAATTTTAT GCATTTTATT TTATTTACAT
ACAACATAAA TTTTTATACA TGTATAATTA TATCATATAT TTTGACCCAT AATGCAACTT CTGCTAGTTG TCCATAATGC
TATCCACTAA ATAATATAAC CAATGGTGGA TCTTCACTAA TAATTTTGGA GGGACCAAAA TAATATTTTC AAACTAAGTG
TAGGTTTAAT GTGTAATGTC CGTGCAAAGC CACTAGAGTC ATTCTCCACA CATTGCAAGG TAGGTAGCAT GGCCAGGCTT
CTTTTCCTCC CACAAGCATA ATGCACCACT CTCACCTTGC ACGTGAGTAA AAGAAATGAA AAAATGCCCT TCTTAATCAC
TAACAATATT GACCCAAGTC TTTGCTCTTG AAGGAAGAAG TGTTGGAAGT TGTGCGGCAG AGTTGGGGGA CCTGAAACTA
CCCAGTCCCT ATTAAGAGCT GCCCTTTAAA ATAACATATT GGTTTTCCAC TATTTTCTGC AGTCATTATC ACTTATACAA
GTGATGGCTT TAGATTACAC CTTATGACAT GAATCGTGGA ATGGGGAATA GAAATATCTG CATTTTTTAG GTACTTAATT
CTTGATAAGG AATGTGCATC TTCTTGGCCC CCAATAGGAA TTGTCAATGA AGAGAGCCAT GTAAATATGC TTGTGGTGTG
TATTCTTCCT GGCTTTTTCT CCCCATTCAC ATAACAATAT TTACTAGAAT ATTTTATAAT TGATGCATGT ATGCTGTTTC
CAATGATAAA ACATTAAGTT CAGTTTCCAA CTACAAGTTA ACGGTGTTCT ATCATTGCAG ATTGACTCGT TGAATACTTC
AACCATATCC TGCTAATTAT TCCTTTTATG GATCTAGTTG GATGAAACTA TATCATATTT CAAAACTCTG TCTTCTATAT
TTTTTTCTTT TCCGTTTCTT CTTCCTTTGT ACTTACCCTA CAATATTTCT GGTGCAGGTT GCTGAGGAGA TAGGAACGGA
AGTGAAGTAT CAGAAAAATT TTCTTGAAGA ATTGGTACAC AATTTCATGG ATAATTTTCT TAGTTTGTTT CTACTAGTAT
CTGACGTGTG AGTTGCAAAG GGCATGTTTT GGTTCTGAGG TGACACTTGG AACTATATAT ACCCAATTTT ACTGGTTAAT
TTCATTAAAT CAATGCTAAT TTTATTATTT GATTATATTT ATAATTTAAA AGTTAATCTT TCTATATTCT TCATTCCATA
CGAAATAAAT GTGGAAAAAA ATAAAAAATA AAGCCATCAA TGTTAAAGAA AATAAGGTAA TTCATTGGAA TTTAAAATCA
GAATTCTAAA GTATGAAATA AATAGTGATA CAAAATTAAA TCACATGACA AGGCCTAACA TCTGCATCTA AATTCTTAGC
ATATAGAATC CTTCTGATAG CAGTTTGGAA GGGCCATATA TATACTACTA ATATGTCTAA TAGCATATTA CTAATACCAG
TTCTATCATT CTACGTTGAT AATACTTGCT TAATTAGTTG GGATCTCCTT CCAGATTGTG GCACATGCTG AGGCACTAAT
CTATGTCCCC TGAATTTAAT TTCGCAGCAA GAGAAAAATT AATACAATTC ACCAAATTAA TGGTGCCGGC ATCTGGAAAA
ATGAATTATT TATTAAAATT TTGTCTTTAG ATTTTAAAAT CTTAATGCTA ACTGAGAGAA AACGTTCTTC AATCAGGAAA
CTATGGTCAG CTTGTTGTAA TGGGAAGAAC TTTAGAAGTT AAAGGAAAGG AAACTGTGTC ATCATGCTTC CATCCATAGT
TTTTTGAACA TGTACTGTTT TTAACAGGGT TCACTGGAAA ATCTTCTGGC TTGCTTTTGT TGCTTGTTGA TTCATAGTAA
TTAGTGTTTT ATCTCCTCTT TAACAGGAAA ATGTCCGACT GTCTTGTTAA TATTTTAGCT TTATCTTTTC CAATGCAGCA
AATGACAATG ATAAAGGCTC AAGCGGGAGT GAAGAACAAC TTAAGAAGAT TGAACAAGAG CATCATCCAA AGTGGTTCAA
ACCATATCAT TCATGTCATT CTTTTCGCGT TAGTCTGTTT CTTTGTTGTG TACCTTTGGT CCAAAATGTT CAGAAAGTGA
GTTACGGACC AGCTTCCATG TTAAAAAATC CAGCTAAAAG GGCTTAATCC ATCAAAACAC ATTATTACGT ATTTTGGTGC
AGAGAAACGG CTCCATAACC CTTTGGAGTT TTCTATTGAA ATGTTGACTT TGAGATGAGT TTCTGGGATA TATGACGTAG
TTAAAGCAGT AATTGTATTT AAAAAATGAT GAATGATTTA AGTTATTAAT AGTTTGCGTT GTTATTTTTC TCTATGAATG
CTGTGATAAA TTAAGAACCT ATGGAGGTTG CAACCATGAT TTATGTTTGA TGGAATCATA GTTCCAAAGT CCCAAATTAC
TGGTTTGTTA ATGAAATTAA AATCCGTGAG AAGCGACAGC AGAACCAGTT TTTATGGAAT GAG

>Vigan.03G181500.01
GATGAACCCA GTTGCCTGGC ACAATCCTAT TTCTTTCCTT CTTCCTTCCA TTTTCTTCTC CACTAAGATT TCTCCCTCAT
TAATTCTTCA ACAGCTTAAC TCCTCGACCT AATTTTTCAG TCTGTGCAAC TCATTCCCCT TTAAACATTC AAACAATCAA
AACCCACCAA CCCAATTGGG TTTCTTTTGA TTTCCCACAA TGGCCGCCAA TTCCCACAGA GTGGGTTCTT CCTACGGCGG
CGCCGCCTCT TACAGATCAA GAGATGGGCT TAGCACTCGA CCGGTTGGTG CCTCTGAGGA GATCCAATTA CGAATTGATC
CCATGGACTT GGACGAGGAA ATCACCGGTC TTCATCGCCA AGTTAGAAGG TTGAAACATG TTGCTGAGGA GATAGGAACG
GAAGTGAAGT ATCAGAAAAA TTTTCTTGAA GAATTGCAAA TGACAATGAT AAAGGCTCAA GCGGGAGTGA AGAACAACTT
AAGAAGATTG AACAAGAGCA TCATCCAAAG TGGTTCAAAC CATATCATTC ATGTCATTCT TTTCGCGTTA GTCTGTTTCT
TTGTTGTGTA CCTTTGGTCC AAAATGTTCA GAAAGTGAGT TACGGACCAG CTTCCATGTT AAAAAATCCA GCTAAAAGGG
CTTAATCCAT CAAAACACAT TATTACGTAT TTTGGTGCAG AGAAACGGCT CCATAACCCT TTGGAGTTTT CTATTGAAAT
GTTGACTTTG AGATGAGTTT CTGGGATATA TGACGTAGTT AAAGCAGTAA TTGTATTTAA AAAATGATGA ATGATTTAAG
TTATTAATAG TTTGCGTTGT TATTTTTCTC TATGAATGCT GTGATAAATT AAGAACCTAT GGAGGTTGCA ACCATGATTT
ATGTTTGATG GAATCATAGT TCCAAAGTCC CAAATTACTG GTTTGTTAAT GAAATTAAAA TCCGTGAGAA GCGACAGCAG
AACCAGTTTT TATGGAATGA G

>Vigan.03G181500.01
ATGGCCGCCA ATTCCCACAG AGTGGGTTCT TCCTACGGCG GCGCCGCCTC TTACAGATCA AGAGATGGGC TTAGCACTCG
ACCGGTTGGT GCCTCTGAGG AGATCCAATT ACGAATTGAT CCCATGGACT TGGACGAGGA AATCACCGGT CTTCATCGCC
AAGTTAGAAG GTTGAAACAT GTTGCTGAGG AGATAGGAAC GGAAGTGAAG TATCAGAAAA ATTTTCTTGA AGAATTGCAA
ATGACAATGA TAAAGGCTCA AGCGGGAGTG AAGAACAACT TAAGAAGATT GAACAAGAGC ATCATCCAAA GTGGTTCAAA
CCATATCATT CATGTCATTC TTTTCGCGTT AGTCTGTTTC TTTGTTGTGT ACCTTTGGTC CAAAATGTTC AGAAAGTGA

>Vigan.03G181500.01
MAANSHRVGS SYGGAASYRS RDGLSTRPVG ASEEIQLRID PMDLDEEITG LHRQVRRLKH VAEEIGTEVK YQKNFLEELQ
MTMIKAQAGV KNNLRRLNKS IIQSGSNHII HVILFALVCF FVVYLWSKMF RK*