GBrowse Details

Vigan.03G131400.01

Basic Information:
Name: Vigan.03G131400.01
Multiple alignment
Variant Information
Position: Chr03:14852056..14854317 (+ strand)
Length: 2262
Functional Information:
Description: Similar to acyl-coenzyme A thioesterase 13-like. [XP_004490572.1, Cicer arietinum]
InterPro: Thioesterase superfamily (IPR006683)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.06,0.17,0.00,0.00,0.00,0.18,0.08,0.00
Arabidopsis thaliana homolog: AT2G29590.1
Automatic updates:
Name: NM_001250140 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305814 (LOC100305814), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:14852056..14852209 (+ strand)
Length: 154
Type: five_prime_UTR
Position: Chr03:14852210..14852404 (+ strand)
Length: 195
Type: CDS
Position: Chr03:14852541..14852681 (+ strand)
Length: 141
Type: CDS
Position: Chr03:14853868..14854011 (+ strand)
Length: 144
Type: CDS
Position: Chr03:14854012..14854317 (+ strand)
Length: 306
Type: three_prime_UTR

>Vigan.03G131400.01 class=Sequence position=Chr03:14852056..14854317 (+ strand)
AATCAACATA AATTTGGAGG TTCGGTAAGA AAACAATGGC TGCAGGAAGA AACCCCTTTC GGCCTTTTAA GTCAATTAAG
CCATGTATTG AAGATCCAGA TAGCAACCAA AACAGGTAGA GAGGAACAAA TTTGTGGGCG GAGCAACGCA AAGAATGGAG
AAAGCAAAAG AGATGCTAAG CCTGACGCAA GAACAGTACG ACGCCGTGTC ACGACTCCAA TTTCTTCCTC CTGTCAGAAC
CGGCGATAAC TCCTCCTTCT ACGAACACTT CGTCCTCGCC GGAATCCGAG TTGACCGAGT TGAACCCGGT TGCGTCTCGT
GCTCCTTCAA AGTCCCTTCT CGTCTCGCCG TAATTTCCGT TTCATAAACT TCTATTATCG TTATCATCGA TCAATAACCC
TCTTTCGCCA TGATTATTTG GTATGATTAC ATTTTAATTG AAGTTGCTTC AACTTGAGGT TAATTTTGAA TGTGTTACGT
TACAGGACAG GAGTGGGAAG TTGGCGAATG GAGCAATTGC GAATTTGGTG GACGAAGTTG GAGGCGCTGT CATCCATGAA
GAGGGTCTCC CCATGAATGT TTCCGTCGAC ATGTCCATTT CTTTTCTCTC AACTGCTCGC GTTGGCGTAA GTTGTAACAA
CTGTAACATT AAATGAAAGT AAAATGTAGA AATTAATGAT TCATGTGTAT CCAACAACCC TATTTTCGCT TAATTAGCTA
TTGTCCTTGT GTTTAGGGTG CCAAATTGAT GATGACTCTA TCAAACCTAC CAACTAGGTA GTTACTATAG GAATTGCATT
GGGGACTGGG GAAGTTTGTG AATTCATAAA CCCGAATTTC ATTTAGGTTG GTCAGATTAC TTATTAGTTA TGGCCTTCAT
TTTGTAGAGA GACATGATGG TTCATAATGA ACTGCACACC TACTCAACCT TTCTACCATT CAACCACTCA AAACCTGGGT
AAAAACTGAA CACGCATAAG ATTCATCCTG TTCAGTTCTT AGACATTAAT GGCGTATTTG GATAAATTTT CTCATAAACA
CTTTTAAGAA AAATAATCGA CAAGAGAAAT GAAATAAACT AATTTGCCGA AGCTCGGTTA TTTTAGTTTC TCCAAAATTA
AAGTTGTTTA TTCATGTATA AGTTAGTTTT AGCTTGTGAA AAAACTTATT TCACAATTTC TTTATACATT TCTTAAAATA
GTTTACGAAG TAGTTTACCC AAATAAACCC TAACAACTTT GTTTGTGTTT GTATTTACAT TCAGTTCATT GTAAAGCCAA
TCCTGGTCCT CTCTTCCTCT GAGTTTCTGC CACAAAATGT CTAAATTTTT TTATTAAACT TGAGTTGAAT GGCTTTCCAA
ACACAGTTAT TCTCTTTAAA AGTGTCCTTT TTAGTTCAAT TGGCGAGTCA ACTTAAATAA GGACTTGGAT TAATCTTATA
AACCGAAAGA AAATAATAGA GCTTTATCTC CTAAAATGGA TTCATTGATT AATCTTAGAT TAAACTGAGG GTTTAAAAAA
AGTGTCCTTT TGAGAAGATT CAGAGTTCGG GCCTGGTAAT GCTAGCAACA TGTTTATTGT TTGTATCCAT TCCATGATTC
AACCGTTTCT TATTATATGA CTCCCGCTTT AGGTTTCATA AATTGGGTTC ATTGCTCCAC AACCAACTTT CTTGCTCCCT
TTTCTCCCAC TTTCCTTCTG GTTCTTGCAT CAACATATGC ATTCTTCCAT TATGAACTTG CTGTTTAGGG TGTGAAATGT
GCTTCTACAT AGATGTTTTA TACCTTCTGA ATATATTGAT ATAATGTTGC AGGATGAACT AGAAATTACT TCTAGGTTGT
TAGGAAGGAA AGGAGGTTAT TCTGGGACAA TTGTTCTCCT TAAAAACAAA GCCACGGGAG AATTGATAGC CGAAGGTCGT
CATTCACTAT TTGGTAGACA TAACAGCAAA ATGTAATTCA ATAGATGTGT ATGAAATGTC TGTAAATGAA GATTGTCTTT
GGGAAACTGA CTTGAGTATG AGTCATCACT TATTAATTAG ATAAAGTTCT GAGTGAGAGC ATGATATGAA GACGTGCAAT
TAAAAGTGAA AAAAATCATG CTTGGTTTAT ATGGTTACTG TGACAGTACT TCTCCTATAA CTGTAACTCC TTATTTGTTG
TGGGGTTTGA GATTCACAGA TTTGGAATAA TTTTATGAAT GAGCTTATAA TCTCTATAAG TGAAAAAAAG AGTAAAGCCT
AGTGAATTAC TAATTCCACT TA

>Vigan.03G131400.01
AATCAACATA AATTTGGAGG TTCGGTAAGA AAACAATGGC TGCAGGAAGA AACCCCTTTC GGCCTTTTAA GTCAATTAAG
CCATGTATTG AAGATCCAGA TAGCAACCAA AACAGGTAGA GAGGAACAAA TTTGTGGGCG GAGCAACGCA AAGAATGGAG
AAAGCAAAAG AGATGCTAAG CCTGACGCAA GAACAGTACG ACGCCGTGTC ACGACTCCAA TTTCTTCCTC CTGTCAGAAC
CGGCGATAAC TCCTCCTTCT ACGAACACTT CGTCCTCGCC GGAATCCGAG TTGACCGAGT TGAACCCGGT TGCGTCTCGT
GCTCCTTCAA AGTCCCTTCT CGTCTCGCCG ACAGGAGTGG GAAGTTGGCG AATGGAGCAA TTGCGAATTT GGTGGACGAA
GTTGGAGGCG CTGTCATCCA TGAAGAGGGT CTCCCCATGA ATGTTTCCGT CGACATGTCC ATTTCTTTTC TCTCAACTGC
TCGCGTTGGC GATGAACTAG AAATTACTTC TAGGTTGTTA GGAAGGAAAG GAGGTTATTC TGGGACAATT GTTCTCCTTA
AAAACAAAGC CACGGGAGAA TTGATAGCCG AAGGTCGTCA TTCACTATTT GGTAGACATA ACAGCAAAAT GTAATTCAAT
AGATGTGTAT GAAATGTCTG TAAATGAAGA TTGTCTTTGG GAAACTGACT TGAGTATGAG TCATCACTTA TTAATTAGAT
AAAGTTCTGA GTGAGAGCAT GATATGAAGA CGTGCAATTA AAAGTGAAAA AAATCATGCT TGGTTTATAT GGTTACTGTG
ACAGTACTTC TCCTATAACT GTAACTCCTT ATTTGTTGTG GGGTTTGAGA TTCACAGATT TGGAATAATT TTATGAATGA
GCTTATAATC TCTATAAGTG AAAAAAAGAG TAAAGCCTAG TGAATTACTA ATTCCACTTA 

>Vigan.03G131400.01
ATGGAGAAAG CAAAAGAGAT GCTAAGCCTG ACGCAAGAAC AGTACGACGC CGTGTCACGA CTCCAATTTC TTCCTCCTGT
CAGAACCGGC GATAACTCCT CCTTCTACGA ACACTTCGTC CTCGCCGGAA TCCGAGTTGA CCGAGTTGAA CCCGGTTGCG
TCTCGTGCTC CTTCAAAGTC CCTTCTCGTC TCGCCGACAG GAGTGGGAAG TTGGCGAATG GAGCAATTGC GAATTTGGTG
GACGAAGTTG GAGGCGCTGT CATCCATGAA GAGGGTCTCC CCATGAATGT TTCCGTCGAC ATGTCCATTT CTTTTCTCTC
AACTGCTCGC GTTGGCGATG AACTAGAAAT TACTTCTAGG TTGTTAGGAA GGAAAGGAGG TTATTCTGGG ACAATTGTTC
TCCTTAAAAA CAAAGCCACG GGAGAATTGA TAGCCGAAGG TCGTCATTCA CTATTTGGTA GACATAACAG CAAAATGTAA

>Vigan.03G131400.01
MEKAKEMLSL TQEQYDAVSR LQFLPPVRTG DNSSFYEHFV LAGIRVDRVE PGCVSCSFKV PSRLADRSGK LANGAIANLV
DEVGGAVIHE EGLPMNVSVD MSISFLSTAR VGDELEITSR LLGRKGGYSG TIVLLKNKAT GELIAEGRHS LFGRHNSKM*