GBrowse Details

Vigan.03G118600.01

Basic Information:
Name: Vigan.03G118600.01
Multiple alignment
Variant Information
Position: Chr03:12700008..12702054 (+ strand)
Length: 2047
Functional Information:
Description: Similar to uncharacterized protein. [C6SVN9, Glycine max]
GO: Biological Process: ATP synthesis coupled proton transport (GO:0015986)
Cellular Component: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) (GO:0000275)
Molecular Function: proton-transporting ATP synthase activity, rotational mechanism (GO:0046933)
Molecular Function: proton-transporting ATPase activity, rotational mechanism (GO:0046961)
InterPro: ATPase, F1 complex, epsilon subunit, mitochondrial (IPR006721)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:63.63,44.71,118.37,68.38,151.73,202. 95,100.63,78.58
Arabidopsis thaliana homolog: AT1G51650.1
Automatic updates:
Name: NM_001354133 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATP synthase subunit epsilon, mitochondrial (LOC100499703), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:12700008..12700198 (+ strand)
Length: 191
Type: five_prime_UTR
Position: Chr03:12700199..12700382 (+ strand)
Length: 184
Type: CDS
Position: Chr03:12701556..12701584 (+ strand)
Length: 29
Type: CDS
Position: Chr03:12701585..12702054 (+ strand)
Length: 470
Type: three_prime_UTR

>Vigan.03G118600.01 class=Sequence position=Chr03:12700008..12702054 (+ strand)
CGGAGAACAA TGTAGAAAAG TAAAAATGAA AAATAAAAGT GGGCCGAGAA GTAAAACGAA GGGCTGGGCT TAGAGACAGC
CCATATAACA GTGTGACTGA TTGATTCGAT GCATTGGTGT TGTTAAGGAA GAAAGGGTAC GGTGTCGGAG AGAAGGAGTG
TTAGTGTTGG GAAAAGAAAG AAAGTGTGAA GATGGCGTCG AGCGGAGCGG TGCCGTTTTG GAGAGCAGCG GGTATGACCT
ACATCACATA CTCTAACATA TGTGCCAATC TCGTCAGAAA TTGCCTCAAG GAACCCTACA AGGCCGAAGC CCTCTCTCGT
GAGAAGGTCC ATTTCTCTCT CTCCAAATGG GTCGAGGGCA AGCCTGAAAA ACCAAGTATT CTCATCTTCT CTTCTCAATT
TTCATCATCT GTTTCGTTTA ATTGCATCCA CATAGATTTC ATTTTAATTT CAGATGAAAA GGTTGTAACC ATTGTTATAC
GTTTTATCTC TGTGTGGAGT ATGGGAATGG ATTCCCTCGG TCGCCAAAAT CAATAACCCT AATTTTGGCA TCGCAAATTT
TGATCTTTAT CTTCCTCGTA ATCATGTCGT GGGAGGATCA ATTCCCGTTT TGTGCGAATT AGCTGTCACC AGATCCTTCC
CTTGACATGC TCCATTTCTA TGTTTTTTTA TATGTTTTTT AATTGATGAT AAAAACTATT GATATGGTTC GCTAACCTTT
GTCTCCGTTT TTTTAGTCTT AATTACATGT ATGTATGTGT TTCTATGCAT GTATATTGGT CGTGGCATCC ATGGCTGTGG
GTTCCTATTT TGTGGGAACA AGATTTGTTA AGATAACGCG TTGCACTTGT TAAGGATTAT TGGAGAATGC TTGTCACATT
ACTTTGAGTG TTTTCTATTT TCATTTTCGA AGAAAACAGA AAATGAAGCT AAAGTATCTT TGGTTGATCA TTAGAAAATA
ATTTAAGAAA ATGTATTTAA ACTCAGGTTA AAATTTCCAA TAAGTTGTTT TTATTTTCTG TTTTCTGTGC TTTGTATCAC
GAGTAACCAT GGGAGTACCT TGTCTCTGTT ATTGATGAGC CATTGTACAG TTTTTTAGAA GTAAACAGGA AATTGAAATT
GAAAATAAGT AGTGACATCA TAGCAAATTT TCTAAATTTA ACAGATTGAA AATGGAAATT TTTTTCGCAA ACCAAAACTT
CTCCTTGTTG CAAACACAAT TTAGTGATAC GGATTAATGG ACAATTGGTT CACCGGTGCT GGGTTCTCTT GTCAAGCTAA
AGTTCTTTTG GTATATCACT AGAAAATAAT TTAATAGAAT ATTTCAATAG GATATTGTGA TGTTTGGATA AAACATTCTA
AACATACTTT TAAGTGCTGA ACAAACTTTT GAACAAGGAT ACTCTTTATG TCCTTTACTG AAATTCTAAA CATACTTCTA
GAAGGGGTCC TTGAGTTGAT GACATTTTTC TGTTACTCAT CGCCAAATGT TTTTCAGCTA ACATCATGGT CGTGTATTCT
GACCAAAGTG TTCAAATTTC TTTTTCAGCT GTTCGTTCTG ACACCCCAGG GCAGTGATTC GGAATGCTGG AAGCAATAAA
TGCATAAATC ATTGATATCT GGAAGTTAAT TGTCATTTTG AACCTTTTGT GGTTTTTTAT GTTTAATTTC TTTGTTTTTT
TTCTTTCCAT GAAAAAAAAC ATTACTGGAT TTTGATTCCG ATGGTTATTC TTGTAATAAT GAAGTTTAAA CAAATGATTT
TGAACTTAAT GACAAGTGGC TTTGCACTTC AATCTGCTTC CAGGTCCTGA AATGAGAAAG CTGCTCAACT ATGTTAAGCT
GGCTCATAAG TTTGTGAAAT AATCCTTGAA TAAATTGAAA TAAATCAGGT TTATATTTTT ATTACGATAT TTGAAGATTC
ATCAACACAG AATGCTTCAT GGTTGATTTT ATTATACCGA GTTCCTATTA GCCTTTGTAA TTTCAATGAT GTTTTTGAAG
AAAAGTGGGA TATATCATAT CACACGCAAT GCATCTGTCA ACCGATG

>Vigan.03G118600.01
CGGAGAACAA TGTAGAAAAG TAAAAATGAA AAATAAAAGT GGGCCGAGAA GTAAAACGAA GGGCTGGGCT TAGAGACAGC
CCATATAACA GTGTGACTGA TTGATTCGAT GCATTGGTGT TGTTAAGGAA GAAAGGGTAC GGTGTCGGAG AGAAGGAGTG
TTAGTGTTGG GAAAAGAAAG AAAGTGTGAA GATGGCGTCG AGCGGAGCGG TGCCGTTTTG GAGAGCAGCG GGTATGACCT
ACATCACATA CTCTAACATA TGTGCCAATC TCGTCAGAAA TTGCCTCAAG GAACCCTACA AGGCCGAAGC CCTCTCTCGT
GAGAAGGTCC ATTTCTCTCT CTCCAAATGG GTCGAGGGCA AGCCTGAAAA ACCAACTGTT CGTTCTGACA CCCCAGGGCA
GTGATTCGGA ATGCTGGAAG CAATAAATGC ATAAATCATT GATATCTGGA AGTTAATTGT CATTTTGAAC CTTTTGTGGT
TTTTTATGTT TAATTTCTTT GTTTTTTTTC TTTCCATGAA AAAAAACATT ACTGGATTTT GATTCCGATG GTTATTCTTG
TAATAATGAA GTTTAAACAA ATGATTTTGA ACTTAATGAC AAGTGGCTTT GCACTTCAAT CTGCTTCCAG GTCCTGAAAT
GAGAAAGCTG CTCAACTATG TTAAGCTGGC TCATAAGTTT GTGAAATAAT CCTTGAATAA ATTGAAATAA ATCAGGTTTA
TATTTTTATT ACGATATTTG AAGATTCATC AACACAGAAT GCTTCATGGT TGATTTTATT ATACCGAGTT CCTATTAGCC
TTTGTAATTT CAATGATGTT TTTGAAGAAA AGTGGGATAT ATCATATCAC ACGCAATGCA TCTGTCAACC GATG

>Vigan.03G118600.01
ATGGCGTCGA GCGGAGCGGT GCCGTTTTGG AGAGCAGCGG GTATGACCTA CATCACATAC TCTAACATAT GTGCCAATCT
CGTCAGAAAT TGCCTCAAGG AACCCTACAA GGCCGAAGCC CTCTCTCGTG AGAAGGTCCA TTTCTCTCTC TCCAAATGGG
TCGAGGGCAA GCCTGAAAAA CCAACTGTTC GTTCTGACAC CCCAGGGCAG TGA

>Vigan.03G118600.01
MASSGAVPFW RAAGMTYITY SNICANLVRN CLKEPYKAEA LSREKVHFSL SKWVEGKPEK PTVRSDTPGQ *