GBrowse Details

Vigan.03G112800.01

Basic Information:
Name: Vigan.03G112800.01
Multiple alignment
Variant Information
Position: Chr03:11988993..11992753 (+ strand)
Length: 3761
Functional Information:
Description: Similar to U2 small nuclear ribonucleoprotein B'' 2-like. [XP_004490682.1, Cicer arietinum]
GO: Biological Process: mRNA splicing, via spliceosome (GO:0000398)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: snRNA binding (GO:0017069)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'' (IPR024888)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:65.21,79.35,26.81,21.06,43.31,53.17,33.14,23.22
Arabidopsis thaliana homolog: AT2G30260.1
Automatic updates:
Name: NM_001250958 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499914 (LOC100499914), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254349 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max U2 small nuclear ribonucleoprotein B''-like (LOC100805822), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:11988993..11989095 (+ strand)
Length: 103
Type: five_prime_UTR
Position: Chr03:11989096..11989168 (+ strand)
Length: 73
Type: CDS
Position: Chr03:11990054..11990226 (+ strand)
Length: 173
Type: CDS
Position: Chr03:11990742..11990835 (+ strand)
Length: 94
Type: CDS
Position: Chr03:11991721..11991803 (+ strand)
Length: 83
Type: CDS
Position: Chr03:11992213..11992488 (+ strand)
Length: 276
Type: CDS
Position: Chr03:11992489..11992753 (+ strand)
Length: 265
Type: three_prime_UTR

>Vigan.03G112800.01 class=Sequence position=Chr03:11988993..11992753 (+ strand)
CCCATAATAA AAACAACGTT TTGTTTCTAA GCTTCGTCTC TGCTGGCTAG GGCACCACCG TTACACTGTG TTCATTCATC
TCAATCAGAA AGAGAGAGAG AGAATGTTAT CAGGGGACAT ACCTCCAAAC CAGACCATTT ACATCAAGAA TCTCAATGAG
AAGGTCAAGA AAGACGGTAA CATCTGTTCA CACCCTTATT CACATGCTTT TTATTTTACT GTCTGCTTAA TTTTCAACCA
TTTTCTCACT GTAAATTTTT AACTCCGCTA TGTTGCAAGC TATGTTGCAA TTAAAGTTTT AAGTGAGTTG AGGATATAAT
TTGAAGCAGG ATGATAGTGT TTAATTTTTT TTATCCACTG AATTAGAGTG ACTGGATTTG TCTTGGGAGC TATGATTCCT
GTGTCCCCTT TGCCTAAATT TCGTTGATTA TTAAAATTTT ATGATATGGA CATGTTTCAA TTAGAGAATG TGTGGAGCTT
AATAAACTGG AGATACGTGT AGTGGCATTT CAATATGCTT GCCCGTGATT TTACGTCTCA GATGCTGTAA TTGGAGATGT
TGATACGGCT TTAGGGTTTT AAAAAAGTTA ATTGTCTTTG AATTTTCATG TTGACCGTAT GACAGTTTAA AATTAATTGG
ATTTGTTCTT TTGCGATTTT GTTTGTGACT CTAGGGTTTT TTAAAAAATA AATCGGTGTT GATCATGTGA TAGTTTTTTT
CTTTTTTACA AACTGGGGTG ACTGTGGACT TGGCTTCGGA GGAGCAATGA TTTTGCATTT CTTTGGCTGA AATTTTATTG
CTTATGCTAA GGGGCGTGTA TGTGTCTTTA ACCAAGATAT ATGTTGTGGC ATTTTGTGTA TGTGTCTTTA ACCAAGATAT
ATGTTGTGGC ATTTTGTCAA ACGTGCCAAT GATTTTGCCT GTTAGATGTT GTAATCTGAT ATGTTATTTT ACTGATTTTG
TTGAAATGAC TTTAGGTTTA GAAAAATAGA TTCAATTTGA ATTTTGATTT TGTACCTTCA TCAGAATTTA ATGTTACATT
GTGTTCTATT CGATGTGGCA GAGTTGAAGA GATCTCTGTA TTGCTTGTTC TCTCAATATG GAAGGATTTT GGATGTTGTT
GCTCTAAAGA CACCCAGGCT TCGAGGACAG GCATGGGTTT GTTTCAGTGA AGTCACTGCA GCCAGCAATG CTGTGAGACA
AATGCAAAAC TTCCCATTTT ATGAAAAACC TATGGTAATC AAGTTATAGT GTTGTTAATT TCCTTAAAGT TCTGTTCATA
AATGTGTTGT GTCCTGTACC CAAGTTTTGA AACCATTTCT CGTTGCTTGT GCATCATATA TAACTGTTTT TCTCCTCTAT
TATGGATTTA TGTTTTGGCC AAACTATACT TCCCTCTGGG TGTTATTACT TAAATATTGT TTAAATTTCT TTGATCCAAA
CTTTTATTGT CCTGTCCTGT TGGAACTATT TTCATTGTCA AGAATGACAC AAAATATGGA TGACGTCTCG TGTTCTTTAT
CTCCCCGTGT TCTTTATCTC CCCGTGTTCT TTATCTCCCC GTGTTCTTTA TCTCCCCGTG TTCTTTATCT CCCCGTGTTC
TTTATCTCCC CGTGTTCTTT ATCTCCCCCA CCGCCACCCC AGAGACACGC ACTTACTTTT CCCTATGAAG CTTCTTGATA
TTTTGATTTT GGTTAAAGCT TCACTTTAAC ATATGTCTAA AGCCTTTTTT TGCCAATAAT TTGATGTAGA GAATTCAATA
TGCAAAAACA AAGTCCGATT GTATTGCAAA AGAAGAGGGT AGTTATGTTC CAAGGGAAAA GAAGAAGAAA CAAGAGGAGA
AAGGTGAGCA TAACTGTCAT TTTCGTCATT TTTGGAATTG TAGAACTCAT GCATACTACA TGTACCGTTA TTATCTTTCC
CTCTCTGTAT GTTTGAACGG GACAAAGGAT CATGTATAAT GAGATTGTAA CATTGCAAAA ACTAGTCCTT AGAATTTAAT
GGGAGGAATC CGCAATGCAG CTAAAAAGAA GAAATTATTA ATGTTATTTA ATTTTATCAT AACATGACAA TTCTCTATGG
AAAATTTAAA ACTGAAAAAA GTAAAATAAC TGGAAGTATT TACATATATG ATGGAGATCA TACTGTTGTT TGAACCCAAT
GGTCATTTGT TGTGGTCATT CGTGAATGCA CCTGTCGTAC TTTTTAAAGT TATTTTCGTT TCCTTTGCCT GGGAACTTTA
GTAAACCTTT ATCAAACCTC AGATTTCTTA GGCCCCAAAT AAAATGATAG AAATTTTCTG TTGGAAGTTT TAGCAGTGGA
GCTTGTCGTT GTTATATAGT GTTTGTGACG TTAATTTTAT TTTGTCCATA TGCATGGATT TCTTGGTGAT GCTTATGGAC
TACTGTGCGT GTGAAAGATT AGTAAATCAA CCCACCTAGT CCCCTTCCAA ATTTGGAAAA AAAATATCCT TCAATTGCTG
CATGCACACA TCGGCAGCTA ACCAAAAGGA TAAAGCCATC TAGATTTTAA GTGTAAATAA ATCTGCATTT CCAATTAAAT
ATTATGTTTG GCATTTTAAG AGAAAAATAT CAAAATTCTC CTTTTCAAAA TTGTTTTTAA GTTCCATCTT TCTGATCTTG
TTGCATAAAA ATTAATATTA GTTCATTTGT TAGGTTGGTA GTAGTTCTGC CTGTTTTAAT TTAGACTGAC ATAGTTTTGC
CTATTCAGCT GAAAGAAAGC GGCGTGCTGA GGAAGCACAA CAATCTGCTG CGGCTAATGG CATACATGGT GCTAGTAATG
GTGGTCCAAC TGTAAGTTTC TGTAATAATT TATGGTGTCT GATTTTCTCT TCTCTCCTCT TACATATTTG GTTCATCAGA
TCAATCTTCA TGTCTGAGTT TTGTAAGCGT GAATGAAACT AGCAAATTAA AGAACAATGA CTATTGTCAT AGTTTTTGGT
TTTGGTTTAG CTGTAGGTCG GTGGATATGA TGGTAGTGAT TATTGCACTA ACACAGTGTC TGATTTTCTC TTCTCTCCTC
TTACATATTT GGTTCATCAG ATCAATCTTC ATGTCTGATA GTTTTGTAAG CATGAATGAA ACTAGCAAAT TAAAGAACAA
TGATTATTGT CATAGTTTTT GGTTTTGGTT TAGCTGTAGG TCGGTGGATA TGATGGTAGT GATTATTGCA CTAACATAGA
ATATCTACTA TTATCCGCAG GCATCATTCC GTCAAGGATC CAGTGCCCAA GAAGCAGCTG CTCCTAATAA TATTTTATTC
ATAGAGAATT TGCCTCATGA AACTACTGGT AGGATGCTTG AAATGCTCTT CGAACAATAC CCAGGTTTCA AGGAAGTGCG
CTTGATTGAA GCCAAGCCAG GAATTGGATT TGTTGATTTT GAAGATGAGG TGCAATCATC CATGGCCATG CAGGCTCTCA
ATGGCTTCAA AATCACTCCA CTGAATCCCA TGAATATAAC CTTTGCTAAG AAGTAGCTTA TCCGTTTTCT GTAGTCTGTA
TTTTTGTAGA TCTTTAAGAA ACTAATTGCA GACATTGTAA GTTTACCGGA AGTCAAACCA GCAAGGCAGA GTAAGAATTC
AACCACGTTT GTGGAAAGGT TGATATAGTG CTGTTATAAT GTTTATTGAT TTTGTGGTTT AATTTTAGTT TTATCACTCA
AATATGTCCA TTGGAACATT GTAATAGGGG CTGAAGAGTC AAGAAAGGAA ATAAAAAAAA ACAAAACTAG TGATGTGGTA
A

>Vigan.03G112800.01
CCCATAATAA AAACAACGTT TTGTTTCTAA GCTTCGTCTC TGCTGGCTAG GGCACCACCG TTACACTGTG TTCATTCATC
TCAATCAGAA AGAGAGAGAG AGAATGTTAT CAGGGGACAT ACCTCCAAAC CAGACCATTT ACATCAAGAA TCTCAATGAG
AAGGTCAAGA AAGACGAGTT GAAGAGATCT CTGTATTGCT TGTTCTCTCA ATATGGAAGG ATTTTGGATG TTGTTGCTCT
AAAGACACCC AGGCTTCGAG GACAGGCATG GGTTTGTTTC AGTGAAGTCA CTGCAGCCAG CAATGCTGTG AGACAAATGC
AAAACTTCCC ATTTTATGAA AAACCTATGA GAATTCAATA TGCAAAAACA AAGTCCGATT GTATTGCAAA AGAAGAGGGT
AGTTATGTTC CAAGGGAAAA GAAGAAGAAA CAAGAGGAGA AAGCTGAAAG AAAGCGGCGT GCTGAGGAAG CACAACAATC
TGCTGCGGCT AATGGCATAC ATGGTGCTAG TAATGGTGGT CCAACTGCAT CATTCCGTCA AGGATCCAGT GCCCAAGAAG
CAGCTGCTCC TAATAATATT TTATTCATAG AGAATTTGCC TCATGAAACT ACTGGTAGGA TGCTTGAAAT GCTCTTCGAA
CAATACCCAG GTTTCAAGGA AGTGCGCTTG ATTGAAGCCA AGCCAGGAAT TGGATTTGTT GATTTTGAAG ATGAGGTGCA
ATCATCCATG GCCATGCAGG CTCTCAATGG CTTCAAAATC ACTCCACTGA ATCCCATGAA TATAACCTTT GCTAAGAAGT
AGCTTATCCG TTTTCTGTAG TCTGTATTTT TGTAGATCTT TAAGAAACTA ATTGCAGACA TTGTAAGTTT ACCGGAAGTC
AAACCAGCAA GGCAGAGTAA GAATTCAACC ACGTTTGTGG AAAGGTTGAT ATAGTGCTGT TATAATGTTT ATTGATTTTG
TGGTTTAATT TTAGTTTTAT CACTCAAATA TGTCCATTGG AACATTGTAA TAGGGGCTGA AGAGTCAAGA AAGGAAATAA
AAAAAAACAA AACTAGTGAT GTGGTAA

>Vigan.03G112800.01
ATGTTATCAG GGGACATACC TCCAAACCAG ACCATTTACA TCAAGAATCT CAATGAGAAG GTCAAGAAAG ACGAGTTGAA
GAGATCTCTG TATTGCTTGT TCTCTCAATA TGGAAGGATT TTGGATGTTG TTGCTCTAAA GACACCCAGG CTTCGAGGAC
AGGCATGGGT TTGTTTCAGT GAAGTCACTG CAGCCAGCAA TGCTGTGAGA CAAATGCAAA ACTTCCCATT TTATGAAAAA
CCTATGAGAA TTCAATATGC AAAAACAAAG TCCGATTGTA TTGCAAAAGA AGAGGGTAGT TATGTTCCAA GGGAAAAGAA
GAAGAAACAA GAGGAGAAAG CTGAAAGAAA GCGGCGTGCT GAGGAAGCAC AACAATCTGC TGCGGCTAAT GGCATACATG
GTGCTAGTAA TGGTGGTCCA ACTGCATCAT TCCGTCAAGG ATCCAGTGCC CAAGAAGCAG CTGCTCCTAA TAATATTTTA
TTCATAGAGA ATTTGCCTCA TGAAACTACT GGTAGGATGC TTGAAATGCT CTTCGAACAA TACCCAGGTT TCAAGGAAGT
GCGCTTGATT GAAGCCAAGC CAGGAATTGG ATTTGTTGAT TTTGAAGATG AGGTGCAATC ATCCATGGCC ATGCAGGCTC
TCAATGGCTT CAAAATCACT CCACTGAATC CCATGAATAT AACCTTTGCT AAGAAGTAG

>Vigan.03G112800.01
MLSGDIPPNQ TIYIKNLNEK VKKDELKRSL YCLFSQYGRI LDVVALKTPR LRGQAWVCFS EVTAASNAVR QMQNFPFYEK
PMRIQYAKTK SDCIAKEEGS YVPREKKKKQ EEKAERKRRA EEAQQSAAAN GIHGASNGGP TASFRQGSSA QEAAAPNNIL
FIENLPHETT GRMLEMLFEQ YPGFKEVRLI EAKPGIGFVD FEDEVQSSMA MQALNGFKIT PLNPMNITFA KK*