GBrowse Details

Vigan.03G087800.01

Basic Information:
Name: Vigan.03G087800.01
Multiple alignment
Variant Information
Position: Chr03:8803580..8806929 (+ strand)
Length: 3350
Functional Information:
Description: Similar to Uncharacterized protein. [D4N5G0, Glycine max]
GO: Molecular Function: ATP binding (GO:0005524)
InterPro: ATPase, AAA-type, core (IPR003959)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:35.13,4.92,375.48,1893.03,0.54,100.20,2.00,330.98
Arabidopsis thaliana homolog: AT2G39730.1
Automatic updates:
Name: NM_001253223 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like (RCAALPHA), mRNA.
PubMed ID: 24170743 NCBI(pubmed)
20032079 NCBI(pubmed)
Status: Known Variant
Name: NM_001255602 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like (RCA14), mRNA.
PubMed ID: 20032079 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:8803580..8804036 (+ strand)
Length: 457
Type: five_prime_UTR
Position: Chr03:8804037..8804081 (+ strand)
Length: 45
Type: CDS
Position: Chr03:8804525..8804850 (+ strand)
Length: 326
Type: CDS
Position: Chr03:8804973..8805078 (+ strand)
Length: 106
Type: CDS
Position: Chr03:8805162..8805247 (+ strand)
Length: 86
Type: CDS
Position: Chr03:8805438..8805910 (+ strand)
Length: 473
Type: CDS
Position: Chr03:8806008..8806289 (+ strand)
Length: 282
Type: CDS
Position: Chr03:8806511..8806626 (+ strand)
Length: 116
Type: CDS
Position: Chr03:8806627..8806929 (+ strand)
Length: 303
Type: three_prime_UTR

>Vigan.03G087800.01 class=Sequence position=Chr03:8803580..8806929 (+ strand)
TAATTTCATA AAATCTTTTT TTTTTCATGT GCCCATTTTG TTAACCATCA TTGGTTACTA CTTCTAGTGT GGGTTAGTAT
GCAAAAGATC TAATTGATGA ACATTCTAGT CAAACAAACA AACACCAGCC AAAACTTGAT CCTTAAGAGA TGAATGCTAC
TAGTTACGTG CGGTAACAAA TGTCCTAACT TATGGATCAG GAAAAGGCTT CAATACCAAC CTCAAGTTCT ATGGTTGTAG
GTAGATGAAA TCTTTCAGAC ACTATATTGT TGCCACGTGG AAGCCAAGCT AATCTTCTTT TTGTGGATGT TATGGATTTC
TCAACTAGTG TTGAGGATAT GAATTTCTGT TCACTCAATT GCACCATTAC TATAAGTCCT TCCCTATTGT AATTTCTGCA
AGCTCAAAAG CCTTGCGCTG TATTTGCTTT CTCTGCCACT CTGAGCTCAA AACTGTCATG GCTGCCTCAG TCTCCTCTGT
TGGAGCTGTC AACGGAGCTC CAGTATGATC TTTTTCCACT TTTTCCACTT TCTTATCCCT AGTTTCTCAA CTGATCCTTA
GATGATTTGT TTCATACAAA AGCTCAATTC ATTACTGATA TCATTATGTT GGAAAGATAC ATGTATATTC ATGTTAAATA
TTTGCTTAAA TATCAGAAAG AAATATGACA CTACCTTTAT CCTAGTTTAG TTAAGAATTA TTCTAAGTTC TCATTTGATG
AACATGTCTC AAACAGACAA CTTAGTAGTC TATGGTGATT TTGTTCTCCT GTATGTTGAT AGTTAATTCA TTATAAGTTA
GTAACTTTGT CGGGTGTTAT GTAAATTAAT GATCAATATG TATGAGTAAT GATGAAAACA CATTTAAAAT GGAAGCTTGA
GATGTGAGTG GAATTTAAAA ATTAGTTTGA AGAGTGTGAA AGAGTGGCTA CTGTGAATAT TGCAGCTGAG CTTGAACAGA
TCTGGAGCTG GAGCTTCAGT TCCCAGTTCA GCCTTTTTTG GCAGCAGTTT GAAGAAGGTT ACAGTCTCAA GGGTCCCTCA
GACCAAAATT TCCTCTGGGA GTTTCAAAAT TGTTGCTGCA AAAGAGATTG ATGAGAACCA GCAGACTAAT AAGGACAGAT
GGAGAGGTCT TGCCTACGAT ATTTCAGATG ACCAGCAAGA CATCACAAGG GGGAAGGGTT TGGTTGATCC CCTTTTCCAA
GCTCCAATGG ATACTGGAAC TCACTATGCA GTCATGAGCT CTTATGAGTA CCTCAGCACT GGACTTAAAC AGTGAGTGAC
AGACACTGCT GACTCTAAGG CAAACAGTGT TTACTTACCT CTTTTATTAT GAACTGATAA GGTGAACTCC CTTTTTTGAC
CTCATTAAAC CTGGTCATGA TGTGGTGTTT CAGGTACAAC TTGGATAACA CAATGGGCGG ATTTTACATA GCTCCTGCTT
TTATGGACAA GCTTGTTGTT CACATCACAA AGAATTTCAT GACCCTGCCA AACATCAAGG CATGTAAATT GTACACGTAA
ATATTGTCCA AGACTTTAGT GAAAGAAACA GGACACATTC AATACTTTCA TTAATTTTAC AGGTTCCTCT CATTCTTGGT
ATCTGGGGAG GCAAAGGTCA AGGAAAATCC TTCCAATGCG AGCTTGTGTT TGCCAAGATG GGAATCAAGT GAGTAAATGC
TGTATACATG TTACTACTAC AGAACACATC ACTTATATTA TATGCATTAC CATTATCAAC TCTAGTCCAT TAAAAGCACA
TTAAGTTTTT AAAGAGATCA AAACCAAATT TCAATATTTT GATGGATCAG AAACTTATTT GGTGCTAATT TCAAGTCCTT
GTGATGTTCT GCTTGCAGCC CTATCATGAT GAGTGCTGGA GAGTTGGAGA GTGGAAATGC AGGAGAGCCA GCAAAGTTGA
TCAGGCAAAG GTACCGTGAA GCTGCTGATA TAATAAAGAA GGGAAAGATG TGCGTTCTCT TCATCAATGA TCTTGATGCA
GGAGCTGGTC GACTTGGTGG AACCACTCAG TACACTGTGA ACAACCAGAT GGTGAATGCC ACCCTCATGA ACATTGCTGA
TAACCCCACA AACGTTCAGC TCCCTGGTAT GTATAACAAG GAAGAGAATC CCCGTGTGCC CATCATTGTC ACCGGTAACG
ATTTCTCAAC ACTGTATGCT CCTCTCATCC GTGATGGTCG TATGGAGAAG TTCTACTGGG CACCTACCAG AGACGACCGA
GTTGGTGTCT GCAAGGGAAT TTTCCGCACT GACAATGTTC CCGAAGATGA CATTGTCAAG CTTGTTGATA CCTTCCCTGG
CCAATCCATT GGTAAGTAAT GTTGGTATTT ACTCGCAAAT AGAATTGAAA ATGTTGAAGA CATAGATGCA AAACAACAAG
ACTAATGTCA TGCCATATAT CATTGCAGAT TTCTTTGGTG CACTCAGGGC TAGAGTATAT GATGATGAAG TGAGGAAGTG
GGTTTCTGGT GTTGGTATTG AGGGTATTGG GAAGAAGCTT GTGAACTCAA AGGAAGGACC TCCAACCTTT GACCAGCCCA
CGATGAATTT GAATAAGCTC TTGGAGTATG GTAACATGCT TGTCCAAGAA CAAGAGAATG TGAAGAGAGT CCAACTGGCA
GACAAGTACT TGAACGAAGC TGCCCTTGGT GATGCCAATG AAGATTCCAT CAAGAGAGGA ACTTTCTATG GTTTGATCTT
TTATCCTGAG ACATTCATTC ATACAGGATG TTTGCATTGC ATTATTCCAT AGTTTTCTGT CAATTTAGTC ATAAATTCAT
AATAATGCAT TGCCTACATT AACTTTTTTA ACAATTTGAC AAAATTATGT CAAAATCAAA TTCATCAAAA GCATATTTTT
ATCAAACAAG ACAATCTCTA AAGTTTTTGG CTGTTTCCTG ATTGTGTGCA GGCAAAGCGG CACAGCAAAT AAATGTTCCT
GTTCCTGAAG GTTGTACTGA TCCAAATGCC GAAAACTTCG ACCCAACTGC AAGAAGTGAT GATGGAACCT GCTTATACAC
CGACTGAGAA CTTGAGCATT CTCCGCTTGA GGAGAAACTA GGACATGAGA TAATCGAATA ATTGTATCTA GTTCATACTG
GATTGTTATC CCATTTTGTA ATTTTAGTTG CATTGTTATC CCATTTTTCA GCCTTTGATT TGTTGCTTTT CCACATTTAA
CTTCTGGTTT GAAACGATGT TAATATTATC CTATCTGGTT ATTTCAATCT TGCATACATT GATCAATATG GAAGCCTCAC
AAACTTTAGT CTCTTAACTT AGTTCCATGG AAATCACATA CCAGTTTGGG AAAGAAGTTT ATTTTAGTAA 

>Vigan.03G087800.01
TAATTTCATA AAATCTTTTT TTTTTCATGT GCCCATTTTG TTAACCATCA TTGGTTACTA CTTCTAGTGT GGGTTAGTAT
GCAAAAGATC TAATTGATGA ACATTCTAGT CAAACAAACA AACACCAGCC AAAACTTGAT CCTTAAGAGA TGAATGCTAC
TAGTTACGTG CGGTAACAAA TGTCCTAACT TATGGATCAG GAAAAGGCTT CAATACCAAC CTCAAGTTCT ATGGTTGTAG
GTAGATGAAA TCTTTCAGAC ACTATATTGT TGCCACGTGG AAGCCAAGCT AATCTTCTTT TTGTGGATGT TATGGATTTC
TCAACTAGTG TTGAGGATAT GAATTTCTGT TCACTCAATT GCACCATTAC TATAAGTCCT TCCCTATTGT AATTTCTGCA
AGCTCAAAAG CCTTGCGCTG TATTTGCTTT CTCTGCCACT CTGAGCTCAA AACTGTCATG GCTGCCTCAG TCTCCTCTGT
TGGAGCTGTC AACGGAGCTC CACTGAGCTT GAACAGATCT GGAGCTGGAG CTTCAGTTCC CAGTTCAGCC TTTTTTGGCA
GCAGTTTGAA GAAGGTTACA GTCTCAAGGG TCCCTCAGAC CAAAATTTCC TCTGGGAGTT TCAAAATTGT TGCTGCAAAA
GAGATTGATG AGAACCAGCA GACTAATAAG GACAGATGGA GAGGTCTTGC CTACGATATT TCAGATGACC AGCAAGACAT
CACAAGGGGG AAGGGTTTGG TTGATCCCCT TTTCCAAGCT CCAATGGATA CTGGAACTCA CTATGCAGTC ATGAGCTCTT
ATGAGTACCT CAGCACTGGA CTTAAACAGT ACAACTTGGA TAACACAATG GGCGGATTTT ACATAGCTCC TGCTTTTATG
GACAAGCTTG TTGTTCACAT CACAAAGAAT TTCATGACCC TGCCAAACAT CAAGGTTCCT CTCATTCTTG GTATCTGGGG
AGGCAAAGGT CAAGGAAAAT CCTTCCAATG CGAGCTTGTG TTTGCCAAGA TGGGAATCAA CCCTATCATG ATGAGTGCTG
GAGAGTTGGA GAGTGGAAAT GCAGGAGAGC CAGCAAAGTT GATCAGGCAA AGGTACCGTG AAGCTGCTGA TATAATAAAG
AAGGGAAAGA TGTGCGTTCT CTTCATCAAT GATCTTGATG CAGGAGCTGG TCGACTTGGT GGAACCACTC AGTACACTGT
GAACAACCAG ATGGTGAATG CCACCCTCAT GAACATTGCT GATAACCCCA CAAACGTTCA GCTCCCTGGT ATGTATAACA
AGGAAGAGAA TCCCCGTGTG CCCATCATTG TCACCGGTAA CGATTTCTCA ACACTGTATG CTCCTCTCAT CCGTGATGGT
CGTATGGAGA AGTTCTACTG GGCACCTACC AGAGACGACC GAGTTGGTGT CTGCAAGGGA ATTTTCCGCA CTGACAATGT
TCCCGAAGAT GACATTGTCA AGCTTGTTGA TACCTTCCCT GGCCAATCCA TTGATTTCTT TGGTGCACTC AGGGCTAGAG
TATATGATGA TGAAGTGAGG AAGTGGGTTT CTGGTGTTGG TATTGAGGGT ATTGGGAAGA AGCTTGTGAA CTCAAAGGAA
GGACCTCCAA CCTTTGACCA GCCCACGATG AATTTGAATA AGCTCTTGGA GTATGGTAAC ATGCTTGTCC AAGAACAAGA
GAATGTGAAG AGAGTCCAAC TGGCAGACAA GTACTTGAAC GAAGCTGCCC TTGGTGATGC CAATGAAGAT TCCATCAAGA
GAGGAACTTT CTATGGCAAA GCGGCACAGC AAATAAATGT TCCTGTTCCT GAAGGTTGTA CTGATCCAAA TGCCGAAAAC
TTCGACCCAA CTGCAAGAAG TGATGATGGA ACCTGCTTAT ACACCGACTG AGAACTTGAG CATTCTCCGC TTGAGGAGAA
ACTAGGACAT GAGATAATCG AATAATTGTA TCTAGTTCAT ACTGGATTGT TATCCCATTT TGTAATTTTA GTTGCATTGT
TATCCCATTT TTCAGCCTTT GATTTGTTGC TTTTCCACAT TTAACTTCTG GTTTGAAACG ATGTTAATAT TATCCTATCT
GGTTATTTCA ATCTTGCATA CATTGATCAA TATGGAAGCC TCACAAACTT TAGTCTCTTA ACTTAGTTCC ATGGAAATCA
CATACCAGTT TGGGAAAGAA GTTTATTTTA GTAA

>Vigan.03G087800.01
ATGGCTGCCT CAGTCTCCTC TGTTGGAGCT GTCAACGGAG CTCCACTGAG CTTGAACAGA TCTGGAGCTG GAGCTTCAGT
TCCCAGTTCA GCCTTTTTTG GCAGCAGTTT GAAGAAGGTT ACAGTCTCAA GGGTCCCTCA GACCAAAATT TCCTCTGGGA
GTTTCAAAAT TGTTGCTGCA AAAGAGATTG ATGAGAACCA GCAGACTAAT AAGGACAGAT GGAGAGGTCT TGCCTACGAT
ATTTCAGATG ACCAGCAAGA CATCACAAGG GGGAAGGGTT TGGTTGATCC CCTTTTCCAA GCTCCAATGG ATACTGGAAC
TCACTATGCA GTCATGAGCT CTTATGAGTA CCTCAGCACT GGACTTAAAC AGTACAACTT GGATAACACA ATGGGCGGAT
TTTACATAGC TCCTGCTTTT ATGGACAAGC TTGTTGTTCA CATCACAAAG AATTTCATGA CCCTGCCAAA CATCAAGGTT
CCTCTCATTC TTGGTATCTG GGGAGGCAAA GGTCAAGGAA AATCCTTCCA ATGCGAGCTT GTGTTTGCCA AGATGGGAAT
CAACCCTATC ATGATGAGTG CTGGAGAGTT GGAGAGTGGA AATGCAGGAG AGCCAGCAAA GTTGATCAGG CAAAGGTACC
GTGAAGCTGC TGATATAATA AAGAAGGGAA AGATGTGCGT TCTCTTCATC AATGATCTTG ATGCAGGAGC TGGTCGACTT
GGTGGAACCA CTCAGTACAC TGTGAACAAC CAGATGGTGA ATGCCACCCT CATGAACATT GCTGATAACC CCACAAACGT
TCAGCTCCCT GGTATGTATA ACAAGGAAGA GAATCCCCGT GTGCCCATCA TTGTCACCGG TAACGATTTC TCAACACTGT
ATGCTCCTCT CATCCGTGAT GGTCGTATGG AGAAGTTCTA CTGGGCACCT ACCAGAGACG ACCGAGTTGG TGTCTGCAAG
GGAATTTTCC GCACTGACAA TGTTCCCGAA GATGACATTG TCAAGCTTGT TGATACCTTC CCTGGCCAAT CCATTGATTT
CTTTGGTGCA CTCAGGGCTA GAGTATATGA TGATGAAGTG AGGAAGTGGG TTTCTGGTGT TGGTATTGAG GGTATTGGGA
AGAAGCTTGT GAACTCAAAG GAAGGACCTC CAACCTTTGA CCAGCCCACG ATGAATTTGA ATAAGCTCTT GGAGTATGGT
AACATGCTTG TCCAAGAACA AGAGAATGTG AAGAGAGTCC AACTGGCAGA CAAGTACTTG AACGAAGCTG CCCTTGGTGA
TGCCAATGAA GATTCCATCA AGAGAGGAAC TTTCTATGGC AAAGCGGCAC AGCAAATAAA TGTTCCTGTT CCTGAAGGTT
GTACTGATCC AAATGCCGAA AACTTCGACC CAACTGCAAG AAGTGATGAT GGAACCTGCT TATACACCGA CTGA

>Vigan.03G087800.01
MAASVSSVGA VNGAPLSLNR SGAGASVPSS AFFGSSLKKV TVSRVPQTKI SSGSFKIVAA KEIDENQQTN KDRWRGLAYD
ISDDQQDITR GKGLVDPLFQ APMDTGTHYA VMSSYEYLST GLKQYNLDNT MGGFYIAPAF MDKLVVHITK NFMTLPNIKV
PLILGIWGGK GQGKSFQCEL VFAKMGINPI MMSAGELESG NAGEPAKLIR QRYREAADII KKGKMCVLFI NDLDAGAGRL
GGTTQYTVNN QMVNATLMNI ADNPTNVQLP GMYNKEENPR VPIIVTGNDF STLYAPLIRD GRMEKFYWAP TRDDRVGVCK
GIFRTDNVPE DDIVKLVDTF PGQSIDFFGA LRARVYDDEV RKWVSGVGIE GIGKKLVNSK EGPPTFDQPT MNLNKLLEYG
NMLVQEQENV KRVQLADKYL NEAALGDANE DSIKRGTFYG KAAQQINVPV PEGCTDPNAE NFDPTARSDD GTCLYTD*