GBrowse Details

Vigan.03G085500.01

Basic Information:
Name: Vigan.03G085500.01
Multiple alignment
Variant Information
Position: Chr03:8580004..8584203 (+ strand)
Length: 4200
Functional Information:
Description: Similar to Uncharacterized protein. [I1JI27, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Yip1 domain (IPR006977)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.99,5.36,9.47,8.61,13.32,22.78,16.65,11.19
Arabidopsis thaliana homolog: AT2G39805.2
Automatic updates:
Name: NM_001254240 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein YIPF1 homolog (LOC100813483), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:8580004..8580237 (+ strand)
Length: 234
Type: five_prime_UTR
Position: Chr03:8580238..8580294 (+ strand)
Length: 57
Type: CDS
Position: Chr03:8580772..8580811 (+ strand)
Length: 40
Type: CDS
Position: Chr03:8580915..8580998 (+ strand)
Length: 84
Type: CDS
Position: Chr03:8582129..8582294 (+ strand)
Length: 166
Type: CDS
Position: Chr03:8582576..8582849 (+ strand)
Length: 274
Type: CDS
Position: Chr03:8583372..8583563 (+ strand)
Length: 192
Type: CDS
Position: Chr03:8583564..8584203 (+ strand)
Length: 640
Type: three_prime_UTR

>Vigan.03G085500.01 class=Sequence position=Chr03:8580004..8584203 (+ strand)
GACCCGGCGA ATTGAAGTTG AGGGTGGGGT CCAATCCCGT GTATGAAAGA GCACGCTATT TTGTTTAGAG TCCTCCCTCT
GCAACACGTT CCTTCCAAAC GACGATAGAA AAAACAACTT TCGTTCTGCT ATCTAGGGCT CTATTCCGAT TCCGAGTCCG
AACCCCCTCA ATGCTTATCT GAACTAATTA GGTCGTCTTC ACTTACGCTT TTTCTCTGCA TTGTATCGAT TTCCATGGAG
GAGTCTTCCT ACACCGGTCT TCCCACTAGC CACTTGCTTG GTTCAGTTCC TGTAAGCGAG AGCATCTTTC GTTTTTCTTT
TCTAATTTGC GCTCTTTGCT TGTCATATCG CTTCACTTCA CTCTCTGCAT GCTCGATCGT CTTCAACTGT TTTCATATTT
TTTTAGGAAT TAAGTTAATT GTGTGGAAAT TTAGCGGAAG GAGTGGGATG AAGTGAAATT ATGGAATGAC AAGTGTAATC
GGTTGATTCC ACGATTATAA AATAGCTAGA GCTGTATTGT AAGGTTATTT CTAAATTAAG TAAGAGAACC GCGGCGCCTC
CGTTAAATGT GTTTGTGATT TTAAGATATT GACATTAATT GATTTTGTTA ACTCAGTTTT GATTTTTATG GTTCATGTTG
AAGCGATGGA AAAGTTACTT TGTTGAGGAG CATGCGTGAT CTTTGTTACT TTATAATCAT TCTGTTATTC CTGTGTGATT
CTTTGTGATA GTAAAGTAAC AGGTTCTGTT AATCTGTTTG GTACTCAGGC TGTCATTACT GAAGAAAATA ATAGCACGAA
ACATGTGGGT ATGGATTTAT GCATCGAGCT TCCGTTTCTT GTATTTCCTA CTTTTAAAGT TTAAGTGCTT CTAGATAGTT
GCTTATGAAC ACATATATAT GATGCATGTA GCCACTGATG AGAGTATGCA AATATTCCCT CCAAACAATG GAGTAGACCG
AGGAACTGGA TATCAAACGG TTGGCGGCCG TACTGGTATG TTCTCTAATT TTTGTGACTT GGAGAGTTCA GAGATTTGTT
TCTTTATCTG ATTTTTCTCT CTTCCTTTTC TCTCCTTTTA AATGATTTAA CAATATATTG GTAGTCTATG GCTGTTTCCT
GGTGAATTTA GTACATGACA GTGAGACACT AATCGGTATA CTGTATTGTC AATTCTTGAC TAATGAAGGG GATCAGGAGT
TTTTTTTTTT TTTTTTTTTA GCTGTAGGCA TCTTACAACT GAACAATTTA ACTGGAACTT TCAAGCAGTC CCTCCATGTT
GCCTAGTCTC ATGATATTGT CTACTGATTT GTGTTATATC TTCTAAATTA GTTGTCATTA GTGAATTTCA CCTACTCCTA
ACAATTGAAA TTGTAGGAAA CACCAAATAT AATCCCATAT CTTTAATCTA CTATCGTTTG GGGGAGAGTT AGCATATTCT
TCAATTTCTT TAATGTGTTA CTGTTTTAAT GTTATGCATT CTTAAAAGTT GTTTTCAATA CTCCCAAGTA TTGTTGTTTA
ATCTATGTTC CTTTTACCTT TGTTCTTTCC AGGCTATGAA GCCAACGTGA ACTGCTTAAA TATGTCCAAT AATTAAGTTC
AAAATAAATA GTTATTTTAT TTTATTTTAT TTCCATTCTT GACCAAATTA TCTATTTACT TTAGCTATAT TTTGACCCCT
TTTGCCTTGT GCTACTTGAT GAGAAAGCTA TTATGCATTG CTGTCACTTA GATAATAAAA TTTAATTTTC TCTTTATGCC
TGCATAACAG GGTTCAAATG GTAATAAAAA CAATCCCTAA TTAGACTTAC AAAGAATTTA TAGTAGAATA AAGTAAAACA
AAGTTTAAAA GTTACGCAAT TTCATTAAAT TGCCACCCAA TTATGATCAT TAAAGACAGT CAACACTAAT AATTGCATAT
CTTAAGTGTC AGTTCCAAAT ATTATGCCAA TTTTTTTCTG GATTTTATAT TATGTACAAA TTTGAGTTTA ACCATTGACC
AAGGTTTACA CCCATATTGA TTCTATAATC AGATTTGCGA ATAGTGCTCA TTTGTATTTT CATTTTCCAT GGTCACTTGC
TGATATAGAA ATGGTGTTCA TTATTCTCTT GTTTCTTCAT CTCAGAAGCT TTTGAACAAC AGCCAGCAAG CAACTGGAGG
GGAGTCTTTA GCATCTCATC GTATTCACAG TATTTTGATG TAGACACGGA TGTTGTCGTA ATCAGATTAA TAAGTTCTCT
GAATCCAGTT GCGGGAGACT TCTTCAGCAA GATAGATGCT AACCCTGATT TGTGCGTTAT TATTTTACCT TTTATACTTT
CAATTATCAA AATAGAGAAA CTCGTTTTGA TTACATAGTG AATATATGGG AGTTGAGGGA AATTTTAATT TAATTAAACT
GTTACCATAA CATTTTTTTT CTTCACACCC CTCCATTTTT TTTTTCTATA TCTATTTTAG TTAAAGGGGA CATTTGCTAG
TCATGACTAG ATTTTCAGCA CCCTTCCCTA AAAATCGTAA ATGGTGCATT TAATGGATAT CGGATACTAA GGTTGCGATT
CTTTTGTGAT AGATATGGGC TTATATGGAT CTCAACAACA CTGGTGTTTG TGCTTGCCGC ACTTGGAAAT CTGGCTACGT
TCCTTATGCA AAAACATGCT GATAACAGTA CGTCGTGGAG CTTTGATGTC AGCTATATGA ACGTGGCTGC ATGCTCAATC
TACGGTTATG CAATTGTGGT CCCATTGGCA TACTACTTCT TCCTTCAGTA TATGGGTTCA AATGCCAGCC TTATAAGATT
TTGGTGCATG TGGGGGTATT CTCTCACCAT TTTCATCATA TCTTCGGTAA GTTTCTGCTT TCTCCAACGT GGTAAATTTC
ATTCTGAAGG TTTTTATATT ACAAATAATA TTGCACAATT ATTTATACCA CACATGTTCA GCTTGGGGGA ATGTGGCCCT
GAAGGCGAAA TTTGAAATGG ACAGTGCCTC AACAAGTGAG GCGCTCTTCC TTTAAAGCTC GAAGGGCCTT TGGGCTCAGA
CTCCAATCCC TCCTCACCAT GTAAATAGCA CGTTGACCAA AAATAAAACC ATGCAAAAAA TACCATTAAA TCTCAGGTGG
TGAGGACGTT GTAGTGAATG GATTGTGTCG TAGAATGAAT TTTTTTTTCC GATTCTGTAC TGCGTTCTTA TAATATATCC
CAATGTCCAG ATTGGATGCG TGACTTCTTT TCACGTATTT GTATTTAAGT TGTCACTGAA TTTTATAATT TGTGATAGGA
AATTACATCA CTAGTTCACT AATCATACTT TAACTTTGTG GAGACTTTCG CATTTCGATC TAATTCATAT TTCTTTGGAC
ACTTTCAGTT CCTGTTGTTA ATTCCTGTTG AGTTTCTTCG GTGGGTTATA ATACTCCTTA CGGGTGTTGC CTCAGCAAGC
TTTGTTGCTT TAAACCTGAG GTCTTACATA GAAGGCAATG AGCTTTCGGT GGCGATTATT GCTGCATTTT TCTTGCAAAT
AGCTTTGGCA ATCTTCATCA AGGTTTGGTT CTTTCCGTAG CTAAAATGCT CTGCAGCAGT GAAGAATAAG CCCCGAACAC
TGTCATTATG AACTCACTGC ATTGGCTAAC TTTGTTCAAG ACGAGAGTGG AATTGTCTGA AGCAGAATTG GTTTGCGTAT
TTTCGATTTA CTAGAATGGA ATGGTAAAGA ATTGCAGAGG AATTAGTGCG AATTTCAGTA TCAGCCCGAT CAGAGTTTCT
GTATCATTTT GGCTTAATGT GGAAGACTCA ATACCCGGGA AGGGGATAAT GAATGATCAT GATTTGTAGT ATCTGTGTAT
CTTTGAGCTT TTTGCATGTT TCTGTAAATA TACAGAATCA AGTAAATCTT TTTTTAATTG ATTTTTTAAG TGACTGTTTT
ACGTGGAGCC TAGGCAATTT CTTGTACGGT GAATCAAAAT TTTGTCATGC CATCATCCTT TGGAAAGTGA CATTGTATCT
CGGATCACCC TTGCTTCTTA TTTTTAGTTC AATAACAACT TGGTAGAGTG CAACAAGGCG TCCTATCGCC TGAGCTTAAG
CATGATATGC ATGCTGAGTT TTTAGTATCA TCTAATTATA ATTAAAATAT AATTAGAGGA GTTTAGCAGC TAATTGTAGT
TTTGTTGTCA AAAAAATAGT TTTCATCAAT TAAATCAAAA 

>Vigan.03G085500.01
GACCCGGCGA ATTGAAGTTG AGGGTGGGGT CCAATCCCGT GTATGAAAGA GCACGCTATT TTGTTTAGAG TCCTCCCTCT
GCAACACGTT CCTTCCAAAC GACGATAGAA AAAACAACTT TCGTTCTGCT ATCTAGGGCT CTATTCCGAT TCCGAGTCCG
AACCCCCTCA ATGCTTATCT GAACTAATTA GGTCGTCTTC ACTTACGCTT TTTCTCTGCA TTGTATCGAT TTCCATGGAG
GAGTCTTCCT ACACCGGTCT TCCCACTAGC CACTTGCTTG GTTCAGTTCC TGCTGTCATT ACTGAAGAAA ATAATAGCAC
GAAACATGTG GCCACTGATG AGAGTATGCA AATATTCCCT CCAAACAATG GAGTAGACCG AGGAACTGGA TATCAAACGG
TTGGCGGCCG TACTGAAGCT TTTGAACAAC AGCCAGCAAG CAACTGGAGG GGAGTCTTTA GCATCTCATC GTATTCACAG
TATTTTGATG TAGACACGGA TGTTGTCGTA ATCAGATTAA TAAGTTCTCT GAATCCAGTT GCGGGAGACT TCTTCAGCAA
GATAGATGCT AACCCTGATT TATATGGGCT TATATGGATC TCAACAACAC TGGTGTTTGT GCTTGCCGCA CTTGGAAATC
TGGCTACGTT CCTTATGCAA AAACATGCTG ATAACAGTAC GTCGTGGAGC TTTGATGTCA GCTATATGAA CGTGGCTGCA
TGCTCAATCT ACGGTTATGC AATTGTGGTC CCATTGGCAT ACTACTTCTT CCTTCAGTAT ATGGGTTCAA ATGCCAGCCT
TATAAGATTT TGGTGCATGT GGGGGTATTC TCTCACCATT TTCATCATAT CTTCGTTCCT GTTGTTAATT CCTGTTGAGT
TTCTTCGGTG GGTTATAATA CTCCTTACGG GTGTTGCCTC AGCAAGCTTT GTTGCTTTAA ACCTGAGGTC TTACATAGAA
GGCAATGAGC TTTCGGTGGC GATTATTGCT GCATTTTTCT TGCAAATAGC TTTGGCAATC TTCATCAAGG TTTGGTTCTT
TCCGTAGCTA AAATGCTCTG CAGCAGTGAA GAATAAGCCC CGAACACTGT CATTATGAAC TCACTGCATT GGCTAACTTT
GTTCAAGACG AGAGTGGAAT TGTCTGAAGC AGAATTGGTT TGCGTATTTT CGATTTACTA GAATGGAATG GTAAAGAATT
GCAGAGGAAT TAGTGCGAAT TTCAGTATCA GCCCGATCAG AGTTTCTGTA TCATTTTGGC TTAATGTGGA AGACTCAATA
CCCGGGAAGG GGATAATGAA TGATCATGAT TTGTAGTATC TGTGTATCTT TGAGCTTTTT GCATGTTTCT GTAAATATAC
AGAATCAAGT AAATCTTTTT TTAATTGATT TTTTAAGTGA CTGTTTTACG TGGAGCCTAG GCAATTTCTT GTACGGTGAA
TCAAAATTTT GTCATGCCAT CATCCTTTGG AAAGTGACAT TGTATCTCGG ATCACCCTTG CTTCTTATTT TTAGTTCAAT
AACAACTTGG TAGAGTGCAA CAAGGCGTCC TATCGCCTGA GCTTAAGCAT GATATGCATG CTGAGTTTTT AGTATCATCT
AATTATAATT AAAATATAAT TAGAGGAGTT TAGCAGCTAA TTGTAGTTTT GTTGTCAAAA AAATAGTTTT CATCAATTAA
ATCAAAA

>Vigan.03G085500.01
ATGGAGGAGT CTTCCTACAC CGGTCTTCCC ACTAGCCACT TGCTTGGTTC AGTTCCTGCT GTCATTACTG AAGAAAATAA
TAGCACGAAA CATGTGGCCA CTGATGAGAG TATGCAAATA TTCCCTCCAA ACAATGGAGT AGACCGAGGA ACTGGATATC
AAACGGTTGG CGGCCGTACT GAAGCTTTTG AACAACAGCC AGCAAGCAAC TGGAGGGGAG TCTTTAGCAT CTCATCGTAT
TCACAGTATT TTGATGTAGA CACGGATGTT GTCGTAATCA GATTAATAAG TTCTCTGAAT CCAGTTGCGG GAGACTTCTT
CAGCAAGATA GATGCTAACC CTGATTTATA TGGGCTTATA TGGATCTCAA CAACACTGGT GTTTGTGCTT GCCGCACTTG
GAAATCTGGC TACGTTCCTT ATGCAAAAAC ATGCTGATAA CAGTACGTCG TGGAGCTTTG ATGTCAGCTA TATGAACGTG
GCTGCATGCT CAATCTACGG TTATGCAATT GTGGTCCCAT TGGCATACTA CTTCTTCCTT CAGTATATGG GTTCAAATGC
CAGCCTTATA AGATTTTGGT GCATGTGGGG GTATTCTCTC ACCATTTTCA TCATATCTTC GTTCCTGTTG TTAATTCCTG
TTGAGTTTCT TCGGTGGGTT ATAATACTCC TTACGGGTGT TGCCTCAGCA AGCTTTGTTG CTTTAAACCT GAGGTCTTAC
ATAGAAGGCA ATGAGCTTTC GGTGGCGATT ATTGCTGCAT TTTTCTTGCA AATAGCTTTG GCAATCTTCA TCAAGGTTTG
GTTCTTTCCG TAG

>Vigan.03G085500.01
MEESSYTGLP TSHLLGSVPA VITEENNSTK HVATDESMQI FPPNNGVDRG TGYQTVGGRT EAFEQQPASN WRGVFSISSY
SQYFDVDTDV VVIRLISSLN PVAGDFFSKI DANPDLYGLI WISTTLVFVL AALGNLATFL MQKHADNSTS WSFDVSYMNV
AACSIYGYAI VVPLAYYFFL QYMGSNASLI RFWCMWGYSL TIFIISSFLL LIPVEFLRWV IILLTGVASA SFVALNLRSY
IEGNELSVAI IAAFFLQIAL AIFIKVWFFP *