GBrowse Details

Vigan.03G072000.01

Basic Information:
Name: Vigan.03G072000.01
Multiple alignment
Variant Information
Position: Chr03:6931822..6934671 (+ strand)
Length: 2850
Functional Information:
Description: Similar to uncharacterized protein. [C6T7L2, Glycine max]
GO: Biological Process: intracellular protein transport (GO:0006886)
Molecular Function: protein binding (GO:0005515)
InterPro: NSF attachment protein (IPR000744)
Tetratricopeptide-like helical (IPR011990)
Tetratricopeptide repeat (IPR019734)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.12,0.04,5.90,2.56,8.34,4.05,9.35,5.79
Arabidopsis thaliana homolog: AT3G56190.1
Automatic updates:
Name: NM_001255626 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max soluble NSF attachment protein SNAP14 (GMSNAP14), mRNA.
PubMed ID: 28338077 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:6931822..6932065 (+ strand)
Length: 244
Type: five_prime_UTR
Position: Chr03:6932066..6932210 (+ strand)
Length: 145
Type: CDS
Position: Chr03:6932304..6932353 (+ strand)
Length: 50
Type: CDS
Position: Chr03:6932452..6932524 (+ strand)
Length: 73
Type: CDS
Position: Chr03:6932722..6932801 (+ strand)
Length: 80
Type: CDS
Position: Chr03:6932924..6933075 (+ strand)
Length: 152
Type: CDS
Position: Chr03:6933421..6933580 (+ strand)
Length: 160
Type: CDS
Position: Chr03:6933667..6933714 (+ strand)
Length: 48
Type: CDS
Position: Chr03:6933839..6933919 (+ strand)
Length: 81
Type: CDS
Position: Chr03:6934330..6934410 (+ strand)
Length: 81
Type: CDS
Position: Chr03:6934411..6934671 (+ strand)
Length: 261
Type: three_prime_UTR

>Vigan.03G072000.01 class=Sequence position=Chr03:6931822..6934671 (+ strand)
ATACTACATC GATGAAAGTG CATTTTTAGT AAAAAAAATT GTTTGTAATG GATGAAATGG CGGAACGAGC GGACCCGGGA
AAGCATCTTC CTAATTGGAA AAACTAACCA TTGTTGTAAT TGCGTGTAAA ACTTCCATTA GCGTTAGAGT TTAATTTGAT
GATAAAGAGT TTCTATCAAG GAACAATTAA CGAAGACTGC ATGAAGGAGA GGGAATCGAT CGATTGATTC CAATAATTAA
AAACATGGGC GATCATTTGG CTAGGGCCCA GGATTTCGAG AGCAAGGCAG AGAAGAGGCT CACCGGTTGG GGTTTGTTTG
GCTCCAAATT CGAGGACGCC GCTGATCTCT TCGACAAATC CTCCAATTCC TACAAGTTGG CCAAATCATG TAACCTTGAT
TTTCTCCAAA TCTTTAGATT AATGATCATT AATGGCGATC ATGTCATGTT GGTTAAGGTT TGGGATTATA TTAATGTTTC
AGGGGATAAA GCAGGAGCCA CGTACATCAA ATTGGCGAAT TGTCATTTGA AGGTAACTAG TCGATTTCGT TTCGTTTCGT
TTTTTTTTTT TTTGTGTATT TGTTCTGATT TGATTTTCTT TACGTGCTGT GACGAATTGA ATTGTTGTAG TTGGAAAGCA
AGCATGAAGC TGCCCAAGCT TATGTTGACG CTGCGCATTG CTATAAAAAA ACTAACATAA ATGGTATTTT TGCGGTTACA
ATTTACATAC ATTAGGATTA TGTTTTTGAG AACAATTGAA CATGTTTCTT TTTGTTTGCT TGTGTGCGTG TGTTTGGGGT
CAAGTTCACA TGTGCTTGTT CGTGATCAAA TTGTGTAATG CATGCCGGTG CTTAATGGAA TTTTCGATGT TGAGGTTCTT
TTTGTATCTT TTTAATGCAG AGGCTGTATC TTGCTTAGAC AATGCTGTAA ATATTTTTTG TGAGATTGGA AGACTCTCTA
TGGCTGCTAG ATATTTGAAG GTATCTTACT ATTATTTTTA TTTGGAGGTA TCCTTTTTCC ATTTGACAAT GCTTTTTCGG
GCTTTCCAGC AGGAATTGTG GTGCATGTAT CATGATTGGC TTGAATATTT CTGTATGCGC AGGAAATTGC TGAGTTATAT
GAGGCTGAAC AAAATATCGA GCAGGCAGTA ATTTACTTTG AAAGAGCCGC TGATTTTTAT GAAAATGAAG AAGTGAACAC
TTCTGCAAAC CAGTGCAAGC AAAAAGTTGC TCAATACTCT GCACAGCTAG AACAGTAAGA TTTTTCTAAT TTTCTGCTTA
TTTTGATCTT CTTTGTTCCA GTGAACTGTG AGAGCATTGA TAATAATGCT TGAAGATAGT TTTCTTCTGT TGTTCTGTGT
TTGTTCGTTA CAATGTTTTT TGGTTTAGTA AACTGGCATT CCTCTGTATC ACCCCTAGCC TCTACCGCTG GGTTACGTGT
TTTGACAAAT ATTAGCCGAT TGATTCATTT AATCTTATTC ATATATTGAC GTTATTCATA TATTGGCAGT AACTCCGAAT
AATGTCAAGG AACTTTATCA TAGCCTTCTC TGTATGTTAA ATAGAATATG AACTGTTCTA ATTTTTTATA TATCTCCAGA
TATCAGAGGT CAATTGAGAT TTACGAAGAG ATTGCTCGCC AGTCTCTAAA CAATAATTTG CTGAAGTATG GAGTTAAAGG
ACATCTTCTT AATGCTGGCA TTTGCCAACT TTGTAGAGGC GATGTTGTTG CTATTACCAA TGCACTGGAG CGATATCAGG
TCCGAAATTT TCTATGAATT TACATCTTGA GACTCTGATA ACATAACCAG TTACTAAATT CTTCGGAATG TATTTGTTTA
TGCAGGATAT AGATCCAACA TTTTCAGGAA CACGTGAATA TAGATTTCTT GCAGTACGTT GCTAGTTGTG TGTCTCCTCT
GTTAAAATGC TCTTATTAAT GTTTGGTCTT ATTATTTCAC GGGCTATTTC ATTATTCATT CCCGATAATG TACTGACAAT
TTTAAAAATA TGGACAGGAT ATTGTTGCTG CAATTGATGA AGAAGATGTT GGAAAGTTTA CTGAAGTTGT AAAAGAATTT
GATAGCATGA CCCCTCTGGT AAGCTTCAAA TAGTTGTCAA ATCAATAAGA ATTTTTTTTT TATGTAGTTA AGATCTATAT
TCTTGTTGAA GAATGTACAT ATCAAAATTG AATTAACCCA ATTGTCAACA ATTTAGTGAT CTTGTTCTCT CTAATTTGCA
TCTGCGTTGA ATGTTCCTGT GAAATATTGA TTTATTCATT TAAAAACATA GGTTGGACGA TAGTACTTTT CTGCGCTAGT
TATATTGAGA AATTTGAGTC AGACACTATA AAATTGAATT GAATTCTACA ATTTTATGAG ATGAACGTTA AGGAAAAATA
ATTCTCATTA TTTTTGTGTA CTATGTTGAA CCCAGTTATG AACTGTTGTG ATTGTTAGCT TAAACTCTCA TTTGATCAAC
ATTGAGTGTT TACGTCAATG TTTTGTAGGA CTCTTGGAAG ACAACACTTC TTTTGAGGGT GAAGGATAAA CTGAAAGCCA
AAGAACTTGA GGAGGATGAT CTTACTTGAA TTGGATAATA GTCTTCTTTC GGTTGGATAT CTTGTTTGAT ATTTTTATGG
TTCTTTGTCT AGTTGCTCAT CTCACTACTA ATATAAATTG TACTTTGCTT TGAGTTTCAA TTGGAATGGT CTTCATGAAT
TCTTGAAATG AATATGTTGA GGTAGCTAGA GTTAATCTGT TGATCGACTT TTATTGGATT TGCATATATA TACTGGACAG
TTTTCATCAT AAAGAGATTT TATAGTAGCA ATTTATTTGG AGGAATGAAA 

>Vigan.03G072000.01
ATACTACATC GATGAAAGTG CATTTTTAGT AAAAAAAATT GTTTGTAATG GATGAAATGG CGGAACGAGC GGACCCGGGA
AAGCATCTTC CTAATTGGAA AAACTAACCA TTGTTGTAAT TGCGTGTAAA ACTTCCATTA GCGTTAGAGT TTAATTTGAT
GATAAAGAGT TTCTATCAAG GAACAATTAA CGAAGACTGC ATGAAGGAGA GGGAATCGAT CGATTGATTC CAATAATTAA
AAACATGGGC GATCATTTGG CTAGGGCCCA GGATTTCGAG AGCAAGGCAG AGAAGAGGCT CACCGGTTGG GGTTTGTTTG
GCTCCAAATT CGAGGACGCC GCTGATCTCT TCGACAAATC CTCCAATTCC TACAAGTTGG CCAAATCATG GGATAAAGCA
GGAGCCACGT ACATCAAATT GGCGAATTGT CATTTGAAGT TGGAAAGCAA GCATGAAGCT GCCCAAGCTT ATGTTGACGC
TGCGCATTGC TATAAAAAAA CTAACATAAA TGAGGCTGTA TCTTGCTTAG ACAATGCTGT AAATATTTTT TGTGAGATTG
GAAGACTCTC TATGGCTGCT AGATATTTGA AGGAAATTGC TGAGTTATAT GAGGCTGAAC AAAATATCGA GCAGGCAGTA
ATTTACTTTG AAAGAGCCGC TGATTTTTAT GAAAATGAAG AAGTGAACAC TTCTGCAAAC CAGTGCAAGC AAAAAGTTGC
TCAATACTCT GCACAGCTAG AACAATATCA GAGGTCAATT GAGATTTACG AAGAGATTGC TCGCCAGTCT CTAAACAATA
ATTTGCTGAA GTATGGAGTT AAAGGACATC TTCTTAATGC TGGCATTTGC CAACTTTGTA GAGGCGATGT TGTTGCTATT
ACCAATGCAC TGGAGCGATA TCAGGATATA GATCCAACAT TTTCAGGAAC ACGTGAATAT AGATTTCTTG CAGATATTGT
TGCTGCAATT GATGAAGAAG ATGTTGGAAA GTTTACTGAA GTTGTAAAAG AATTTGATAG CATGACCCCT CTGGACTCTT
GGAAGACAAC ACTTCTTTTG AGGGTGAAGG ATAAACTGAA AGCCAAAGAA CTTGAGGAGG ATGATCTTAC TTGAATTGGA
TAATAGTCTT CTTTCGGTTG GATATCTTGT TTGATATTTT TATGGTTCTT TGTCTAGTTG CTCATCTCAC TACTAATATA
AATTGTACTT TGCTTTGAGT TTCAATTGGA ATGGTCTTCA TGAATTCTTG AAATGAATAT GTTGAGGTAG CTAGAGTTAA
TCTGTTGATC GACTTTTATT GGATTTGCAT ATATATACTG GACAGTTTTC ATCATAAAGA GATTTTATAG TAGCAATTTA
TTTGGAGGAA TGAAA

>Vigan.03G072000.01
ATGGGCGATC ATTTGGCTAG GGCCCAGGAT TTCGAGAGCA AGGCAGAGAA GAGGCTCACC GGTTGGGGTT TGTTTGGCTC
CAAATTCGAG GACGCCGCTG ATCTCTTCGA CAAATCCTCC AATTCCTACA AGTTGGCCAA ATCATGGGAT AAAGCAGGAG
CCACGTACAT CAAATTGGCG AATTGTCATT TGAAGTTGGA AAGCAAGCAT GAAGCTGCCC AAGCTTATGT TGACGCTGCG
CATTGCTATA AAAAAACTAA CATAAATGAG GCTGTATCTT GCTTAGACAA TGCTGTAAAT ATTTTTTGTG AGATTGGAAG
ACTCTCTATG GCTGCTAGAT ATTTGAAGGA AATTGCTGAG TTATATGAGG CTGAACAAAA TATCGAGCAG GCAGTAATTT
ACTTTGAAAG AGCCGCTGAT TTTTATGAAA ATGAAGAAGT GAACACTTCT GCAAACCAGT GCAAGCAAAA AGTTGCTCAA
TACTCTGCAC AGCTAGAACA ATATCAGAGG TCAATTGAGA TTTACGAAGA GATTGCTCGC CAGTCTCTAA ACAATAATTT
GCTGAAGTAT GGAGTTAAAG GACATCTTCT TAATGCTGGC ATTTGCCAAC TTTGTAGAGG CGATGTTGTT GCTATTACCA
ATGCACTGGA GCGATATCAG GATATAGATC CAACATTTTC AGGAACACGT GAATATAGAT TTCTTGCAGA TATTGTTGCT
GCAATTGATG AAGAAGATGT TGGAAAGTTT ACTGAAGTTG TAAAAGAATT TGATAGCATG ACCCCTCTGG ACTCTTGGAA
GACAACACTT CTTTTGAGGG TGAAGGATAA ACTGAAAGCC AAAGAACTTG AGGAGGATGA TCTTACTTGA 

>Vigan.03G072000.01
MGDHLARAQD FESKAEKRLT GWGLFGSKFE DAADLFDKSS NSYKLAKSWD KAGATYIKLA NCHLKLESKH EAAQAYVDAA
HCYKKTNINE AVSCLDNAVN IFCEIGRLSM AARYLKEIAE LYEAEQNIEQ AVIYFERAAD FYENEEVNTS ANQCKQKVAQ
YSAQLEQYQR SIEIYEEIAR QSLNNNLLKY GVKGHLLNAG ICQLCRGDVV AITNALERYQ DIDPTFSGTR EYRFLADIVA
AIDEEDVGKF TEVVKEFDSM TPLDSWKTTL LLRVKDKLKA KELEEDDLT*