GBrowse Details

Vigan.03G067600.01

Basic Information:
Name: Vigan.03G067600.01
Multiple alignment
Variant Information
Position: Chr03:6526054..6530895 (- strand)
Length: 4842
Functional Information:
Description: Similar to Uncharacterized protein. [I1JIG9, Glycine max]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: Beta-lactamase-like (IPR001279)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.67,7.70,8.14,23.71,9.26,8.59,5.73,4.89
Arabidopsis thaliana homolog: AT2G04530.1
Automatic updates:
Name: NM_001255636 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ribonuclease Z, chloroplastic-like (LOC100807082), mRNA; nuclear gene for chloroplast product.
PubMed ID: 28294342 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:6526054..6526237 (- strand)
Length: 184
Type: three_prime_UTR
Position: Chr03:6526238..6526327 (- strand)
Length: 90
Type: CDS
Position: Chr03:6526724..6526798 (- strand)
Length: 75
Type: CDS
Position: Chr03:6527244..6527312 (- strand)
Length: 69
Type: CDS
Position: Chr03:6528783..6528896 (- strand)
Length: 114
Type: CDS
Position: Chr03:6528970..6529065 (- strand)
Length: 96
Type: CDS
Position: Chr03:6529334..6529404 (- strand)
Length: 71
Type: CDS
Position: Chr03:6529478..6529640 (- strand)
Length: 163
Type: CDS
Position: Chr03:6530303..6530677 (- strand)
Length: 375
Type: CDS
Position: Chr03:6530678..6530895 (- strand)
Length: 218
Type: five_prime_UTR

>Vigan.03G067600.01 class=Sequence position=Chr03:6526054..6530895 (- strand)
TTAGAATCCA TTTTGTCAAA TTTTGGATAA AGAAATAGCA ATAAAACCTG AAAGTCGAAA CGGCAGTGTT TAGCAAGTTA
ACCTTATCTT CGAATTCCAT CACCAATGTC CCTGTGGTTG ATTTATATAG ACACCCACCA ACGTCTGTAA AACCCAGATT
AAACCCTCTT TTTTCAGTCC CTCTTTCTAT CCATCACCGT TCAAATTCAT AAGCAACAAT GCATATTTCT CTTAGCAACT
TAGCCTTCAA GACCCCTCAA CACTTTCCAC TGCACCACCC CATTCTCCCT CCAAAGCCAC TGCACCACCA AGTTTCAACG
CAAAGCCATA TCAATGTGCT GAAAGGGTCG GGGTATTTGT CTGAAATCAG CAAAAAAATT GATCACGAAG AGCAGTACCG
TATAGCCCGG TCGCAGGTGA ACCGGAAAGT TCTGGAATTG GAAGGTTATT CCATTGAGGG TATTTCAGTT GGAGGCCAAG
AGACATGTAT CATTATCCCT GAATTCAAGA GCACTTTTGA TATTGGGAGG TGCCCTAGTA GAGCTATTAA TCAAAATTTC
CTTTTCATTA CTCATGCTCA TCTTGACCAC ATTGTAAGGT TCTCTCCACT TTTGTCACCA ATAACTTTCT ATGGGAGAAA
GGATAAATTT CATATGCTCT CTGTTAGCTT AATAGATTGT ATGGAAAGGC CAATTCATAC TTTATTAGCG TGGCCAGAAG
GTTGTTTGTT ATGAAAAAAT ATGAGTTTTA TTCTGTTTTA AGTTTATATA GGAGATTGTG AAAACAGAGA ATAAAAAAAA
CTTATTTTTA TAGTTTCTTA TATAAACTTT TGAAAATTGA AAATAAAGTA AAAACTGATA TTTTTTTTAA TTAAAGTCTT
CTCTGTTAGA ACTTAGGCCT ATATGTGTTG ATGGCAAGGA CTAATGTTGA TGGCATATAC AGGCTGTGTT TGAATAAGTT
CTCAGTCACA TTGAATGTGC ATCTAATGTG AGAGGAGGTT TGGGTTCAAC ATGCACTGGA AAATGGAATT TTTCTAAACC
AAACACATTC TAAAAACAAC TTACACAAAG ATTGCCTTTT TTTTCTTCGT TTTCACTGAT CCCTGTGGGT CCTGCTTGTG
ATTTGTAAGT TTCTTTGTAA ATGTGCGATT GCATCCTAGT AGTTTCTTTG TAAGTTTTAT TTGTTCTATG TATCGTGTAC
TTTGGATGTT AACTGTACAT TTGGGATAAG TGTGCTATAA TGTTGAATGA TTTAGGGAGG GCTGCCAATG TATGTAGCTA
GCCGTGGTTT GTTCAATTTA AAACCTCCCA CTATCTTTGT GCCTCCTTGC ATCAAAGAGG ATGTTGAGAA GCTGCTTGAT
ATTCACAGAA CAATGGGCCA GGTTGAATTG AATGCTGAAG TGGTTGCCTT GGATGTGGGT ATGTGTCATT TGTCTGTTGT
TAATGATGAG GAGATAACTT CAAGGAAATG ATATGCAAAG TTTCATTTCA GGGGAGACAT ATGAGATACG GAATAACCTT
GTTGTCCGAC CATTCAGAAC ACAACATGTT ATACCTAGCC AGGTATCTTT CAACCAACCA TTCTGTAGCC ATTTTCTTTT
AACTGAAGGG CATGTTATAT CAGTGCTGGA AGTTAACTCG TTCTGTGTAC TAAAATTGTT GAACAAAGAC TTTGGCACAA
AAATTAACGG ATTTTGGCTT AGCACATTTT TGTTTTTGTC TACAGTATTG TCTTCTGTTT CTTGATATTT CAGTTTGAAA
TTGTGTGAAG ACTTGCGGTC TTGTATCACA ACACCTTTAT CTGCTGAAAA CACGTACTTG TTTTATGCAG GGCTATGTAT
TCTACTCAAT CAGGAAAAAA TTGAGGAAAC AGTATGCACA CTTGAATGGG AAACAAATTG AGAAATTGAA GAAGGCTGGT
GCCGAGGTTT GTGATAGCTG GAGCTCAATT TGGATCTAAT CTTCTTTGAT CCTTACCTTT AATGAACTCT CCTTTCTAGA
TTACAGACAC TATATTATCT CCTGAGGTGG CCTTCACCGG TGATACAACA CCAGATTTTA TGCTTGAACC ATGTAACTCT
GATGCATTGA GAGCCAAAAT TCTCATAACT GAGGTATAGT ACATTCTTTT AATGGAACTT GGTACAATTA TTTTGTGTCC
TAGTTCACTG GACTTTGAGA ATTGATAGTA TGATCATTTG AAATTCTTAG AAATGGAGAA TAGAAAAAAG GGTTCAGTAA
TCTTTGGGGT TTGTAAGATG ATCCGAAGAG GGATAAAATA TTGTAACTCG AATATCGTAA GTCAACTTGT AAGAGGTGTG
TGCACCATCT TGAGTCTCCG TTTCTGATAT ACGAGTGGCT GGGAACCCTA GCTGAACAAA AGGGTCACAC GAGTGTTAGG
CTTTGATTTT GGGTCGGGTT GGGTTGTGTA TTAGCCAACA TATGGGTTGG CAAACCTAGC TTCACAAGAT GGAAAGGATT
GACGTGATGC ACAATCCTGA TATTCCGCCA ACATCATGGT CTTGGCACAA TCTGCCATTT GCATCAGTTC GTGGTAGTTT
CTTTATTCAC AGGATCATTC AAGTTTGCGA GTTTACTCGG GATTTTGACA GCATTGCAGG AATCAAGTAT GGGACAATGT
GTAAAATGTG TATGTAATAA GTTTTAGCAT AAAAACAACC TTCCAAGTTT CATAAATGAC TTAACTGTTC CTTAACTAAT
TCTTTAAGAT GATCATATTT ACAACTTGAT GTATTGTCAT GGGAATTTTT TGTTGACTTT TTGTTTTGTG CCTGGTTAGA
TTGAAATCGG AAGGAATGAA AACAGATAGT GAAAAAGGCT GATATTATAA TTTCTATGGT TTTCAGTTTA TTGGTAAATG
ATGATTAAGG GGGGTTTTCT CCTTGATGGC TATACGGAAA GATTGCAGGC CTTTATTATT TCAGGTGTTT TGGTTGTGAT
TTTCCTGTTG GCTTTCTCCA CATGTTTTTT CCTGCAGATT CTTATAGTCT TTCTTTATTG TTTTATCCTA AAGGATAAAG
GAAGAATGAG GGGCAGAGAT AAGGATTTTC TGCTTGCCAT CCTTTTCTCT CTCATTGAAA TCTCTTCATT TTTATATAAT
TTTTGCTTGC CTATACAACA AAACTGAAGA CAGAATACGA GAATGGTGAG AGGCTACAAG AAAAAAATCC TGTTTGTCAG
TTATAAATCA TAATTTTTTA TTTAATCTCA TTTTGAACTT TGTTCTTTTC TTTCTTCCCC TTTATCGTTT ATTGTTTCTT
CTCGGTTCTT TCTGACACTT AACTGTGACA AGATCAATTA AAAATATTAA AGTGTAAACA TTTTTTTATT GTTTATCAAA
GGTTTGTCGT CCTCTTTGTT ATGTTGTGTT ACTAGAATTA TCAGAGTCAT CTAAGTTCAT TTCATCGGTA CTTATGGACA
TTGGGTATAC GCTTACTTGA AAAACTAGGA GTAAAACTTT TCAAAAATTG GTGTTACCTT CCTTTGTAGT GTGCTCTTCT
TTTTTGCTAT CCTAATTGAT CTTTTTGTTT TGTTTGCTTT GCTTATTGAA ACTCTTTTAA TAGGCAACTT TCCTAGATGA
TTCATTCAGC ATAGATCATG CTCGGCAACA TGGTCATACT CATTTATTTG AGGTATGTAA CATGTTTCTT TCTTTCATGG
CTACTCTGAA CTTAGCTCGA CAAATCATAG ATGCAAGAAG GCCAACTTTT GCAGCTATCA TGCTTGCCCT TTCTCTTTTA
TTTTGCTGTC ACTTATGATT GAGTTGGTGT TCATGTTAGT ATAGCTATAG TTATAGTCAT ATATATCACA ATCGTTGTAT
TGTCAGCAGC TTTTTTTAGC CCAATGTTAC AGAATAGTTA AAATAAGTAC ATAGCTTTTC TGGCACCAAA TTGTATACCA
TGTTGGATTC ATAAGTCAAT CTTGTACCAT TTGAAAATAT TAAAAATAAA CTAGATTCTT TATCTGCTCA GACAAATTCA
CACCTTTTTC TGGTGGTTGA CTGATTTCAG AATTTCCTCT CTACTTCATA ATATATTGTT GAATTCCTGA ACAGTAAACT
TATGACACTT TATGTAGATC ATTGCAAATG CACAGTGGAT TCGCAACAAA GCAGTTCTGT TGACTCATTT TTCACCAAGA
TATTCGTTAG AGGTAATGCT ATATTTTTCC TTTTAGTTTT TTAACTTGCA AGTTACATTC CTCAAGTGCT CGTATTTGCA
TATTAGATGC AAATCTCTAA TATTTGTGAA TTTTCATGAC CTTCATCATG GAGGGGCATA CCCTCTTGCA TCACATTAAA
TATGAATTTA ATGACAAACA AAACTTAGAT GCACTCCTAG AGTATTTTAT ATGGTGTTCT TCAATCATAA TTAAAGTTTT
ATCTCAACAA TGTGTACATG TATGAAAGGT TAGTAAATAT TACTTGAATA CAATGCCATT TCTGATTAGA CACCAGCACC
AAAGCCTCTT AAGGAATTAT ATCTAAGTTT TTGTTTCCAT GAAGAAAAAA ACCAGTGAAT AAAATATGCA TTTTTTGTAA
TTTCTCAGGA TATTCGACAA GCTGCATCAA AATTGCAGTC CAGGCTGTCC GCAAAGGTGG TTCCTCTTAC GGAAGGCTTC
AAATCTATGT ACACTTAGGA ATCAACGTAT ATTCACTCTT CACCATTATC AGTGTATCAA ATAGAGGACA AAAGTGTTCC
TAGGTGTAGA TTTCACAGTT TATTTCTTGT AAATTAGAGA GGTACATTTT ATTTTTGAAC TTGTAAGCTT TCAATTTATA
CCTATGTAAT TTACACAGCG TTAAAGTTAT TGTTTCCCCA AC

>Vigan.03G067600.01
TTAGAATCCA TTTTGTCAAA TTTTGGATAA AGAAATAGCA ATAAAACCTG AAAGTCGAAA CGGCAGTGTT TAGCAAGTTA
ACCTTATCTT CGAATTCCAT CACCAATGTC CCTGTGGTTG ATTTATATAG ACACCCACCA ACGTCTGTAA AACCCAGATT
AAACCCTCTT TTTTCAGTCC CTCTTTCTAT CCATCACCGT TCAAATTCAT AAGCAACAAT GCATATTTCT CTTAGCAACT
TAGCCTTCAA GACCCCTCAA CACTTTCCAC TGCACCACCC CATTCTCCCT CCAAAGCCAC TGCACCACCA AGTTTCAACG
CAAAGCCATA TCAATGTGCT GAAAGGGTCG GGGTATTTGT CTGAAATCAG CAAAAAAATT GATCACGAAG AGCAGTACCG
TATAGCCCGG TCGCAGGTGA ACCGGAAAGT TCTGGAATTG GAAGGTTATT CCATTGAGGG TATTTCAGTT GGAGGCCAAG
AGACATGTAT CATTATCCCT GAATTCAAGA GCACTTTTGA TATTGGGAGG TGCCCTAGTA GAGCTATTAA TCAAAATTTC
CTTTTCATTA CTCATGCTCA TCTTGACCAC ATTGGAGGGC TGCCAATGTA TGTAGCTAGC CGTGGTTTGT TCAATTTAAA
ACCTCCCACT ATCTTTGTGC CTCCTTGCAT CAAAGAGGAT GTTGAGAAGC TGCTTGATAT TCACAGAACA ATGGGCCAGG
TTGAATTGAA TGCTGAAGTG GTTGCCTTGG ATGTGGGGGA GACATATGAG ATACGGAATA ACCTTGTTGT CCGACCATTC
AGAACACAAC ATGTTATACC TAGCCAGGGC TATGTATTCT ACTCAATCAG GAAAAAATTG AGGAAACAGT ATGCACACTT
GAATGGGAAA CAAATTGAGA AATTGAAGAA GGCTGGTGCC GAGATTACAG ACACTATATT ATCTCCTGAG GTGGCCTTCA
CCGGTGATAC AACACCAGAT TTTATGCTTG AACCATGTAA CTCTGATGCA TTGAGAGCCA AAATTCTCAT AACTGAGGCA
ACTTTCCTAG ATGATTCATT CAGCATAGAT CATGCTCGGC AACATGGTCA TACTCATTTA TTTGAGATCA TTGCAAATGC
ACAGTGGATT CGCAACAAAG CAGTTCTGTT GACTCATTTT TCACCAAGAT ATTCGTTAGA GGATATTCGA CAAGCTGCAT
CAAAATTGCA GTCCAGGCTG TCCGCAAAGG TGGTTCCTCT TACGGAAGGC TTCAAATCTA TGTACACTTA GGAATCAACG
TATATTCACT CTTCACCATT ATCAGTGTAT CAAATAGAGG ACAAAAGTGT TCCTAGGTGT AGATTTCACA GTTTATTTCT
TGTAAATTAG AGAGGTACAT TTTATTTTTG AACTTGTAAG CTTTCAATTT ATACCTATGT AATTTACACA GCGTTAAAGT
TATTGTTTCC CCAAC

>Vigan.03G067600.01
ATGCATATTT CTCTTAGCAA CTTAGCCTTC AAGACCCCTC AACACTTTCC ACTGCACCAC CCCATTCTCC CTCCAAAGCC
ACTGCACCAC CAAGTTTCAA CGCAAAGCCA TATCAATGTG CTGAAAGGGT CGGGGTATTT GTCTGAAATC AGCAAAAAAA
TTGATCACGA AGAGCAGTAC CGTATAGCCC GGTCGCAGGT GAACCGGAAA GTTCTGGAAT TGGAAGGTTA TTCCATTGAG
GGTATTTCAG TTGGAGGCCA AGAGACATGT ATCATTATCC CTGAATTCAA GAGCACTTTT GATATTGGGA GGTGCCCTAG
TAGAGCTATT AATCAAAATT TCCTTTTCAT TACTCATGCT CATCTTGACC ACATTGGAGG GCTGCCAATG TATGTAGCTA
GCCGTGGTTT GTTCAATTTA AAACCTCCCA CTATCTTTGT GCCTCCTTGC ATCAAAGAGG ATGTTGAGAA GCTGCTTGAT
ATTCACAGAA CAATGGGCCA GGTTGAATTG AATGCTGAAG TGGTTGCCTT GGATGTGGGG GAGACATATG AGATACGGAA
TAACCTTGTT GTCCGACCAT TCAGAACACA ACATGTTATA CCTAGCCAGG GCTATGTATT CTACTCAATC AGGAAAAAAT
TGAGGAAACA GTATGCACAC TTGAATGGGA AACAAATTGA GAAATTGAAG AAGGCTGGTG CCGAGATTAC AGACACTATA
TTATCTCCTG AGGTGGCCTT CACCGGTGAT ACAACACCAG ATTTTATGCT TGAACCATGT AACTCTGATG CATTGAGAGC
CAAAATTCTC ATAACTGAGG CAACTTTCCT AGATGATTCA TTCAGCATAG ATCATGCTCG GCAACATGGT CATACTCATT
TATTTGAGAT CATTGCAAAT GCACAGTGGA TTCGCAACAA AGCAGTTCTG TTGACTCATT TTTCACCAAG ATATTCGTTA
GAGGATATTC GACAAGCTGC ATCAAAATTG CAGTCCAGGC TGTCCGCAAA GGTGGTTCCT CTTACGGAAG GCTTCAAATC
TATGTACACT TAG

>Vigan.03G067600.01
MHISLSNLAF KTPQHFPLHH PILPPKPLHH QVSTQSHINV LKGSGYLSEI SKKIDHEEQY RIARSQVNRK VLELEGYSIE
GISVGGQETC IIIPEFKSTF DIGRCPSRAI NQNFLFITHA HLDHIGGLPM YVASRGLFNL KPPTIFVPPC IKEDVEKLLD
IHRTMGQVEL NAEVVALDVG ETYEIRNNLV VRPFRTQHVI PSQGYVFYSI RKKLRKQYAH LNGKQIEKLK KAGAEITDTI
LSPEVAFTGD TTPDFMLEPC NSDALRAKIL ITEATFLDDS FSIDHARQHG HTHLFEIIAN AQWIRNKAVL LTHFSPRYSL
EDIRQAASKL QSRLSAKVVP LTEGFKSMYT *