GBrowse Details

Vigan.03G055800.01

Basic Information:
Name: Vigan.03G055800.01
Multiple alignment
Variant Information
Position: Chr03:5281045..5286116 (- strand)
Length: 5072
Functional Information:
Description: Similar to uncharacterized protein. [B8ACJ3, Oryza sativa subsp. indica]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:25.95,50.57,23.53,17.35,23.77,37.24,20.42,23.34
Arabidopsis thaliana homolog: AT5G21070.1
Automatic updates:
Name: NM_001253322 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100808307 (LOC100808307), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253986 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100789121 (LOC100789121), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:5281045..5281358 (- strand)
Length: 314
Type: three_prime_UTR
Position: Chr03:5281359..5281569 (- strand)
Length: 211
Type: CDS
Position: Chr03:5282688..5283015 (- strand)
Length: 328
Type: CDS
Position: Chr03:5285813..5285960 (- strand)
Length: 148
Type: CDS
Position: Chr03:5285961..5286116 (- strand)
Length: 156
Type: five_prime_UTR

>Vigan.03G055800.01 class=Sequence position=Chr03:5281045..5286116 (- strand)
CAATATTTTA TTCCGATAGA TATAGAATGA ATTTTCCCAC CTTTTTTCGC CATTTTATTC AGATTTAGTT ATTCTCATCC
CAATCGGAAA CAGTGCTTGC ATGCTTGTAG AGTTCCACAA CAGATCTGAA CGATCGATTC TCTATTTTCG TGGGCAATGG
GTGGCTTCAC CGCTGAAGAT CTGTCCACCA TCGGCGGAAT CGCCACCGTC TCGCTCCTCC ATTCCTTCAT TCCCACTCAC
TGGCTTCCTT TCTCCATTGT AGGTCGCGCG CAGAAATGGA CTCTTTCCAC AACTCTTATC GTCAGTACGT TCTTCCTTCC
ATCACTCTTC TCTTTAATTG CGCAACTTAG GTCACCGACA TTTTTATTTT AGTTCATTGT TTTCTTTTGG CATGTTTTTT
TGTTGTGTAT GGTACGCGAA ACTTCGTTAG GGTTTAGGGA TTGCGGTTTT CTTTAGCACT GTTCTGTTGC GGCGTTTGCT
TGTTTGGATG CGAGTAGAGT GAATGGGACG AGGACAAATT TGTTCTCATA AATGAGTTGT ATAAAGGTGA AATCTAGTGA
TGCGATTGAG TTTCCTTATC CTCTTTTCCC TTTGGATGGT ATTATCTGGA ATCTGAATGC ATACGGCTTT CTGAAGTGCT
ACATATTTTC CCGCTTTTCT GTGCGTTTGT GTGTATTTGT TCATTTCCTT GTCTTATATG TGTTTGGAAC TTAATTAACA
ATCATTGAAT CTCAGATATT TGAAGAGGTC GAGCAGAAAT GTGATAGCAA GATGGGGAGA TTAATGTTGT TGAGCTTTTA
TGTTGATATT AGATAATTAA TTATAGCAGT GCTGTAGATA AAGTAAAACA GAAGAAGTCA AATTTAGGAA ATATTCATAA
TTCATAATTA ACAATAAGAT TTGTATGTTT TAAGAAAACT AACAAGTACA GCAACAAAAA TAAGGTAATA AGCAAGTTTA
AGTGTCTAAG GTTTGAAGTA ATTAAAACAT TACATTCCAA TAGAAGTTGT TAATTGGAAT CTTCAATCAT CCTCTTAAAG
ATTTAAGTCT ATTTTATTAT CATTTTCATC AACTGGAGTT TTATTATCAC CTCTTTTCCC TTTACCCTAG TGCTTGCAAG
CTTAAATGTA GCTGCCCGCT TCAATCTTGT TTGCTGCCTA GGGTAGGTTA AAGGCTTACC AGCGCTAGTT GCATTTATAG
ATTCTTTCTA AGTCGTGGTA TCATGTTAAA GATCAAATCA TCTTCTGCAT CTTTGCCATC TCCACCCTTT TCTCTCACTA
ACCGCTTGTT GCTATCATCA ATATAATTCA AGAGAATGAG ATCAATTACA CCATGACATT CAAAGTGTTC TTTAGCTTGG
TTATATTATA CTCAATACAA ACCAAGTTTT TATGACTGAA AATAGCAGCA GCTACAGCAG TTCAGCTGGT AAAAATGATT
TGGTTGAAAC AATGGGATGC GTGGTTGCTG ATCCGAATAA TGAGGGATGA AAACAATCAA CAGAGAGAGA GAGACTAACT
GAAAATATGC TGCTGACTAT GTGTGATATA TTTGACATAT AAGGTTGGGG AAAAGGGTAG GCGGACATGG ACTCTTTACT
CCTTTCTCTG AGCTGCCATT GTCATTCTCA GTCACTTTTA CGCTGATTTC TCCTAAGTGG ATTATATTCC ATATTTCTTA
TAAGTATTAT AATTGTTGTT GTCACGTTGT TTCATTGCTG TTAGCAAATA CTGATTGATT TTTACCTGGA GTTTGTGATA
TCCTTGATAG ATCTCTTACG TGAGTCTTGC AACATTTTAT GCTCAATCCT ACTTCTTATT TGAATAAACT ATATTACAGT
TTAAAAAAAA AAGAATGTTA GTTTCGTAAT GTTATATACT AAATTTTATA AATTTAAATC ATTTAATATT AACCTACATA
TTCACATTAT GGCAAACTAC AAGTCAAGCT CAGTAATGGA AAGTCTTTAC AAATTTGGTA TATGTGATCC GTACTCAACT
TTAGTGCAAA CGTCATTTGC ATTAGTATTT ACATGGGTTT TTTTCTTATT GCTTAAATTT GAAAAAATGA ACATTCACTT
ACTAGGAGCA TTTTTATTAT GACTACTTGC AATTTGGCTA TCTTATACAT TATCATCTAT TTAAAGTCTT GCCTATGATT
TCTCCAGTTT AACTAAACTT ACCATTGCAT TTATAAAGTG CCTTCTGTCG CTTCATTATC AAGATCAATT CTTGGATAGC
TGTAAAAGAA CTAAGGATTT GGAAAATGAC TTGCTGGATG TAATGGATGG TAAAGTTGAC ACTCTCATCT TCAACCAGTG
ATTGCAAAAA TTTCTTTTTA CCTATCTTCG TTACTGATAG AGCAATTTGA ATCATAAATT CTTTAAAAAA ATTCGGAGTT
CAAAAAAGGG AATGGGCCAG AATGCTAGAA ATCATAAGAA CAAAAAGAAA AGAAAATCAA ATGTGAATTC AGAAACAAAA
ATTGCTGTTC TTTATATATA GAAAAACAGA GCACAAAACA AAGTCAACAA CAACACCAGA AACCAAATAA CCAGGAATTT
TCTTCTAAAT GAATTACAAA CAGCAAAACA CAGAAAAATT ATAAGAAAAG AGAACGTACT TGACAAGAGA GTTGGTTCCC
ATTTCCCAGC CTGCTGGACA TTGAGTGGGT AAACAGAGCA ATAGAAAAGA AGCAACAAAA GGGGAAAACG GTGCAATAGA
GATTGTATAC AGAAGAATCC GGCTTGCTGT CTGGAAAATG CAGCTGAGAA GGCTGGGTCA CGCATGAGGT CATTTAATTA
TATTTTTGTT TATGGCTGCA TTTGATGCTG GATCATTGTG CTCACATGAC TTAAAATGGG CGTTTTCCTT GTCATGATCA
AGGACTATTT ATTAATATAA GAATTGGAAA GTTGTTTTGG AATCCCATTC AAATGCCTTT CATATCTGGA CTTCTAGAGC
AATTGGCATC GTGGTATTCT TACTTTTGTG TAGCTTATTA TGTTGTTTGA TTTTACCTTT ATATTTATAG TAAGACTTAG
CTGACTGTTC TAGGATTCTG TTGATAAAGG TTTTTAACCG TATTCATTTT GTTTCATGCA GCTGCTCTTG GAGCAATTTT
GCATGTAATA TCCACTTCAC TGCTTGGTAT AACGGCAATT ACCATGGCGA ACACTATTGC TGGTGAAGAA ACAGTGCATA
AGGTTGCTTC ACTTTTGCTT GTATTTCTGG GTGGTAGTTA TATACTGTTG TTTCTGACGG GAAAGGGTGG CCATAGTCAT
TCACACAACC AACCAATGGA GAAAATGGCT GTAGCTGGAC TTATTCTTGT TCCCGCTTTG TCTCCTTGTG CTACAACTCT
CCCAGTATTT CTCGCAGTTG GAAATTCATC TTCCATGATG GTGCTTGCCA TCGTAGTACT ATTGTTCAGG TATGAGTTAA
TTGCCTCAAA CAATAGGATT TTTTCCGTCC TGCTATTTTA TGCTTTGTTT TCAAATGTGT ATACTCGTCT TCTGCTTCCA
TATGCATGTT TCGTGGATCT TTGTTGACCT ATTGTTATTT AAAGTGATAT GTTATTTATT GGAAAACGGT ATCAATGATT
ATCAATGTTA AAAATTCTGA TGTTGACGTT GACATCGAAT AAAGCAAAGG TCCCCAAGAA ATTTTTTACT TCGCGATCAT
GAAAATGTGT TTTCACAATT GAGAAGCTAA TGAAATACAT TCTATTCAAT GTTATTAAAA GTGAACCAAA AAAGTGCTAG
GTTGGGATTA CGGAGATTCG AGTTCATGTT GATCTGTTTT AACTAGCTGG TTGAATCTTT AGGACATCGT TAGAATAATT
TACATGAAAC ATTATAAAAT TCAAAAAAGC TTTTAGGAAA AGTAAATTGA TTAAACCAGG TCGAGTGATT TAAAGTTGTC
TGAAGTTGTT TGACCACCAC CTCAGTTTTG AGATTGAATT ATAATCAGAC AAGTGACAAC TCATGGTTAG ACCAATTGGG
TTGCTTGAAC ATTTGCCAAC AGCGTTAGGA AATACTTGAG TTTTAAGTTG TAATTCCCAT GAAACATTAT AAAATTTATA
CAACTTTTTA GGACATGTGA ACAGGAGGTT AGGTTAAACC AGGTTAAGTG ATTTTAACAG GTCATAACAT AAGATGTTTG
ACTGTCAAAT CAGTTTTGAG ACTGAATTAT AATTGAACAA GTGAACAATT AATGGTTAAA ACTGGTTGGA CTGCTTAGTC
TGGAATCCGA CAACAAAATC TCCATGGCTT GAACATTTGC TTAAAATGCA TGGAAATACA TGGAATGTCA AGTTATAATA
ACATGACATC TTGCAAACCA TTTCTTATAA CAATGTATGC TAAGGCTTCT AATAAGATTG CGGTCTTTTG TCATAATTTC
TAATGCTGTT CTGCAATAAA AAATTCTTTT AGGATCCATA ATATCTTAAT CAGGTCTGGT GCTAGTTTGG TTTAGATGCC
AATCAAGTTA AAAAAATGTT CAAATATTCA TTACTTTTAC CAAGCTTCAC CCTTGTCGCA TTTACAGCAC AATAACTGTG
ATGACTTCGC TGGTAGCATT GTCGTTTTAC GGAGCCAGTC AGCTGAAGTT TCACTGGGTG GAGCGGTATG ACAAACTTCT
TGTTGGTTCA GTGCTTTGTT TAGTTGGAGT CTTGACCCTA CTTTTCCATG ATCATGATCA TGGAGACGTG ATTTCGATTG
GAGAGCAGCA CTCACATAGG AAGATTATTT CCTTTTGAGA TCTATAAATG TTTTGTAATT ACATGTTTTT GAGCATCGTC
AAGGTGGTGT TTTCATCTTG TAGTAGAAGG AAAAGAAAAG AAGGAAAACA GATGTTTCTG TTCAGGAGAA TTGATCACCT
TGGTCAAGTT TAAGTGTTTG TATACTGAGT TTACTGTGAG AAGTTAATGA ATATTCAAAT TATCAATTAG TTTAGTCTAG
TTCTGAAAGA ATGACCACTC CCCAATTTCA CTTTCACTGT CCTCTGACTT GTGCTTTTAA ACCTTGTATT GAAATCAAAA
TGTTTTTATA ATTGAGATAA ACATTTTTTT TA

>Vigan.03G055800.01
CAATATTTTA TTCCGATAGA TATAGAATGA ATTTTCCCAC CTTTTTTCGC CATTTTATTC AGATTTAGTT ATTCTCATCC
CAATCGGAAA CAGTGCTTGC ATGCTTGTAG AGTTCCACAA CAGATCTGAA CGATCGATTC TCTATTTTCG TGGGCAATGG
GTGGCTTCAC CGCTGAAGAT CTGTCCACCA TCGGCGGAAT CGCCACCGTC TCGCTCCTCC ATTCCTTCAT TCCCACTCAC
TGGCTTCCTT TCTCCATTGT AGGTCGCGCG CAGAAATGGA CTCTTTCCAC AACTCTTATC GTCACTGCTC TTGGAGCAAT
TTTGCATGTA ATATCCACTT CACTGCTTGG TATAACGGCA ATTACCATGG CGAACACTAT TGCTGGTGAA GAAACAGTGC
ATAAGGTTGC TTCACTTTTG CTTGTATTTC TGGGTGGTAG TTATATACTG TTGTTTCTGA CGGGAAAGGG TGGCCATAGT
CATTCACACA ACCAACCAAT GGAGAAAATG GCTGTAGCTG GACTTATTCT TGTTCCCGCT TTGTCTCCTT GTGCTACAAC
TCTCCCAGTA TTTCTCGCAG TTGGAAATTC ATCTTCCATG ATGGTGCTTG CCATCGTAGT ACTATTGTTC AGCACAATAA
CTGTGATGAC TTCGCTGGTA GCATTGTCGT TTTACGGAGC CAGTCAGCTG AAGTTTCACT GGGTGGAGCG GTATGACAAA
CTTCTTGTTG GTTCAGTGCT TTGTTTAGTT GGAGTCTTGA CCCTACTTTT CCATGATCAT GATCATGGAG ACGTGATTTC
GATTGGAGAG CAGCACTCAC ATAGGAAGAT TATTTCCTTT TGAGATCTAT AAATGTTTTG TAATTACATG TTTTTGAGCA
TCGTCAAGGT GGTGTTTTCA TCTTGTAGTA GAAGGAAAAG AAAAGAAGGA AAACAGATGT TTCTGTTCAG GAGAATTGAT
CACCTTGGTC AAGTTTAAGT GTTTGTATAC TGAGTTTACT GTGAGAAGTT AATGAATATT CAAATTATCA ATTAGTTTAG
TCTAGTTCTG AAAGAATGAC CACTCCCCAA TTTCACTTTC ACTGTCCTCT GACTTGTGCT TTTAAACCTT GTATTGAAAT
CAAAATGTTT TTATAATTGA GATAAACATT TTTTTTA

>Vigan.03G055800.01
ATGGGTGGCT TCACCGCTGA AGATCTGTCC ACCATCGGCG GAATCGCCAC CGTCTCGCTC CTCCATTCCT TCATTCCCAC
TCACTGGCTT CCTTTCTCCA TTGTAGGTCG CGCGCAGAAA TGGACTCTTT CCACAACTCT TATCGTCACT GCTCTTGGAG
CAATTTTGCA TGTAATATCC ACTTCACTGC TTGGTATAAC GGCAATTACC ATGGCGAACA CTATTGCTGG TGAAGAAACA
GTGCATAAGG TTGCTTCACT TTTGCTTGTA TTTCTGGGTG GTAGTTATAT ACTGTTGTTT CTGACGGGAA AGGGTGGCCA
TAGTCATTCA CACAACCAAC CAATGGAGAA AATGGCTGTA GCTGGACTTA TTCTTGTTCC CGCTTTGTCT CCTTGTGCTA
CAACTCTCCC AGTATTTCTC GCAGTTGGAA ATTCATCTTC CATGATGGTG CTTGCCATCG TAGTACTATT GTTCAGCACA
ATAACTGTGA TGACTTCGCT GGTAGCATTG TCGTTTTACG GAGCCAGTCA GCTGAAGTTT CACTGGGTGG AGCGGTATGA
CAAACTTCTT GTTGGTTCAG TGCTTTGTTT AGTTGGAGTC TTGACCCTAC TTTTCCATGA TCATGATCAT GGAGACGTGA
TTTCGATTGG AGAGCAGCAC TCACATAGGA AGATTATTTC CTTTTGA

>Vigan.03G055800.01
MGGFTAEDLS TIGGIATVSL LHSFIPTHWL PFSIVGRAQK WTLSTTLIVT ALGAILHVIS TSLLGITAIT MANTIAGEET
VHKVASLLLV FLGGSYILLF LTGKGGHSHS HNQPMEKMAV AGLILVPALS PCATTLPVFL AVGNSSSMMV LAIVVLLFST
ITVMTSLVAL SFYGASQLKF HWVERYDKLL VGSVLCLVGV LTLLFHDHDH GDVISIGEQH SHRKIISF*