GBrowse Details

Vigan.03G055100.01

Basic Information:
Name: Vigan.03G055100.01
Multiple alignment
Variant Information
Position: Chr03:5202414..5207042 (+ strand)
Length: 4629
Functional Information:
Description: Similar to Uncharacterized protein. [I1JIR0, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Leucine-rich repeat (IPR001611)
Leucine-rich repeat-containing N-terminal, type 2 (IPR013210)
Leucine rich repeat 4 (IPR025875)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:105.95,81.83,125.46,118.67,131.17,245.35,133.75,119.37
Arabidopsis thaliana homolog: AT5G21090.1
Automatic updates:
Name: NM_001254465 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100786387), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:5202414..5202671 (+ strand)
Length: 258
Type: five_prime_UTR
Position: Chr03:5202672..5202895 (+ strand)
Length: 224
Type: CDS
Position: Chr03:5203838..5203909 (+ strand)
Length: 72
Type: CDS
Position: Chr03:5204857..5205000 (+ strand)
Length: 144
Type: CDS
Position: Chr03:5205914..5205985 (+ strand)
Length: 72
Type: CDS
Position: Chr03:5206088..5206159 (+ strand)
Length: 72
Type: CDS
Position: Chr03:5206750..5206822 (+ strand)
Length: 73
Type: CDS
Position: Chr03:5206823..5207042 (+ strand)
Length: 220
Type: three_prime_UTR

>Vigan.03G055100.01 class=Sequence position=Chr03:5202414..5207042 (+ strand)
TGAAAAACTA AAACTATATA GTATATTATA AAATCGAAGC TCGCCATGTT TTACTGCTCC GTGTTATTCC CAAAGCCGAT
ACTTCCTTTT CAAGTCTTTT CTCTTTCTCT CTCACAAGAT TCTTCCCTCT TCCTTCCTCT CTCTCTAGAA CTTCGTCCTT
TGCTTTCGTT CTTCTCTGCG CGGTCGTTGC GAACCGACGA ATAAGAGCGA TAACCCTAAC ACGGCAGTAG AGGTGTACGG
TTGAAGCTCA GATCAGCCAT GGCAGCAGCA ACCTGCACTT CCATGCGGTT CCTACTTTCA GTTTCCCTAA CCCTAACTCT
GCTCCGCCTC GGCGCCTCCA ATTCCGAAGG CGATGCGCTG TACACGCTCA AACGGAGCCT GTCGGACCCG GACAACGTCC
TTCAGAGTTG GGATCCCACG CTCGTGAGTC CGTGTACTTG GTTCCACGTC ACCTGCAACC AGGACAACCG AGTCACTCGA
GTGTATTCTC TCTCTATCCC CCTCTGTTTT GTTTGTTTCT GCGATGTTAA GATTTTTTAG TTTCGTTTCG GTGCTCGATT
CTGCTTAATA GTTGGCATTT GTTGCGTTAA TCAACACTTC TGCTGCTTCC TGTTTTATCA CGCGGTGTTG ATTTTTTATT
TTTGTTCTTT AGTTAATTGT TTTATAAAAT TGAAGGATCC CCCGTGAGGT TGCAGGATTC ACTGTTTGCG GTTGGATTCG
TTTGTTTTTA TATTCAATGA AACAAACAAA GCCGCGTTTT CGTCAAATTA CTTCCTGTTG ATAGTTAGAT TTCCATATTT
ACTTACCTGT TTCTTGTGGT GTTTATGTGG TTGGAATTCT TTTTATGTAG TTTAATTAGA TGCTTTTCTT TGCTGTTTTA
CATTTTGGGG GCGGGATTAT TGTTGCCCAT GTTGCATAAA TATTATATAT AATGCATGTA TAAGTTCGTA GTTGAATAAA
TAATCCATGT ATTGACTGTT AAATTTGGCG TCGACCAATA GCAAATGGAA AAGTTTGTTA ACTATTATAA TAATTAGCTT
AAAAGGTTAT ATTAGCGATG ATGTGTGATT GAATATGGTG TTGACTTATA ACATACGTAA AGTGCGCATT TAGATGTGAA
CAAATTCATA AAACTTAATA ATATGTATTG CAATTCATGC TTCTATGTAT CGTATGTAGC TGTATTAAAT TAAACTTTAT
TGTCTTTTAT TAGTAGTTTT GACCCTTCTT CTTTCACTTA TACGAATTAG TAAAGTATTG ATATGTATTG GATAAGATAC
GAGAATAAAA GGAAAACATT GTTCTTCATA GATGGTTGCT ATTATAACTG GTAATATGGG AAATCCAACT AAAATGTGTT
GGTTTGACTG AATCTGTTGA TATTCTGTCC ACATTTATGG TGATAATTAT GTTGCTTTCT ACAGGGATCT TGGTAACTCT
AACCTATCTG GACATTTGGT TCCGGAACTT GGGAAGCTGG AGCATCTGCA GTATCTGTAT GTTTTCTAAA TTTTGGCTAA
TATTTTTTAC CTAGTGTCAC TTAAGTCGTT TAGATGTGAT CGTATGATGG ATAAATACAA TATATGTATT AGATATGATA
CATATTTGAT ATTAGATTCG GTGATATAAT TATTCTAAAA AGTATTGGCC ATGCATGTGA GATACTTGTC AACAACATAA
ATGTAATGAA TTATTGTCAT CATAAATCGT GTTCTATTGT CAAATGGGAA AAGGAGAGGA CTTTAAGTCT ATTTAATGTG
CTCTTATGAT GCATGGATAC AATAAATGTA TCAGATATAT TTATAAAAGG CATCCTATAA TACTAATATT CTATAAATGT
ATCTAGTATG TCTGACACAT ATCTAGATAT GTATAAAAAA AATAAAAATA ATAATAAATA TATTATTGCA ATTATGCAAA
TCCAAATTAA GAAAACTTTT AGGACATTAC TATGAACAAA ATAAAAAAAG AAATTATTGT AATCATAAAT TATTTCCTTT
TATCTTCAAG TAGATATGTA TAAAAAAAAT AAAAATAATA ATAAATATAT TATTGCAATT ATGCAAATCC AAATTAAGAA
AACTTTTAGG ACATTACTAT GAACAAAATA AAAAAAGAAA TTATTGTAAT CATAAATTAT TTCCTTTTAT CTTCAAGTAG
GAAGGATCAT CTATAAAGTG CACGATTTCC ATTTTTTGGT TCACTAAGGA ACAATATATG ACATGTAGCT ATAAAAGTCA
CAAAAAGTAT CATACATTGT TCATATATAT GATATGTTGC TATATTAGAT TTTCATAACT TTTATAAAAG GCTTGTGTGC
TTCATAGATA TATTTCATAT TGTACTCATA TTATTACTAC AATGATTGAT CTATTGGCAT TTGTTGTGAA CTATAGCACC
TCATATTTGT GTGTTTCATG TGCTTTTTCT TAATTGGATG CAGTGAGTTG TACAAAAACA ACATTCAAGG AACTATTCCT
CCAGAACTTG GAAACCTAAA GAGTCTAGTT AGCTTGGACC TGTACAACAA CAACATATCA GGCACCATTC CGTCTTCATT
GGGGAAATTG AAGAATCTTG TCTTTTTGTA AGTCTGCAAT AGCATATTAA GCATGATTGG ACTGATCTGT GGCCTTTGCT
TCCGCTATCC TTTCATTTGA ATTTCTCACA AGAGTTTGAA TGATGCAGGA GAATTACAAG AACATTTGGA TAGCTACTCA
TGGACTTTGG TGTTTTTCAA TTATACATTT TGAGTTTGGA CAATTGTGGG CTTTGTGGTT GATGTTAAGA TGTTGACCAG
TAGTGCATAT ATTTGATGTT AAGACATCTG AAATATGACA GTATATATGA AATGAATTGC TTCCAAAATT CACATGCTCA
TATCCAAACT TAAACCTCAC TCATGGGAGA AATATTAACT GAGTGTTTAG TTCAAAGGAA GGGATGGAAG GGAAAATAAA
ATATTTTACT ATCTTATCCT TAGAATAGAC AAATAAAGCC ATTAAGTAAG CATACTTGAG TTTAATCAGT GTTAAGAAAC
AAAATCTCCC CCTTTAAAAA GAAGGGTAAG AGACTCTAGT ATGACTAAAT TCTGATTAGA TTGAGATGAT TTCACTCCCA
ACATTCAGTG GTGTGATTCA ATCTATAAAC AATCTAAGCA ACTTAAAGGA TTCCTATGTA GTATGAAAGT GTTCAATCTA
TAAATTTTGA TGGACCCTGT CTGGGCAACA TCAGAATCCT TCATAAGTCA AACTACTTGT AGTGAATGGA TGACCTATTG
AAAATTGCTT GCTTTCAACC AACACCAGGA AGCTAAGTTC AAATCTAAAA TAAGTAGCAA TCGTAGTTAG TAGTTCCATT
TTTGAAGTGT TGGAAGCTGT TAGTCTTTAA ATATGAAATA GTTTAACTTA CCGGATTCTT AACTGGTAAA GCCTTTGATT
ATTATTTTGT GGAATAAAAT ATTCCATACT CGCATGTTTC TCATATATGT TTTCTTTCAG ACGACTAAAT GACAACCGAC
TTACTGGCCC TATCCCCAAG GATCTTGCTG CTGTTTCAAG CCTTAAAGTA GTGTAAGTAA AAATGTTGTC TTTATAAGAT
GATCATGATA GAATTATTTG GCATATGATG AAGACGTGGG CTTTTGGAGA GACTAAACAT TAGCTTATTT TCAGGGATGT
CTCCAACAAT GATTTATGCG GTACAATTCC TACCTCTGGG CCATTCGAGC ATATTCCATT GAATAAGTAG GTCCCACTAA
ATCTCTCCTG AATTTTTTAA TTTTTTTTAA TTTTTATTTT TATATTGGGT GAGGGAAGGG GAGCAACAAT GAGAAACCTA
GTAACCTTTC TGCCATGCAC TGCTATATTT ATCGCTTGCA ATTTTTTCTG CTTTATGAGT ATGATGTTAA AGATGTCTTG
TTCACATTCT GTTCACGAAG GTCCTTTTAA ACTGTTATTC ACATTCTATT TATCGAACTG TTAAACTGTG ATGGTAATAT
TCAGTTGTTG TTTATTGTTG TTTGTGATAA TGATATAGCT GCATGTGATA CATTCTCCAA TCGTTTAATG AGATATTATG
AATGCAAAAT TTTGATTAAC TAAATCCGCT GCCCTGTACC AATGCATTTG GGAATAGTGA TTGCGGTGAA TCTGATTGCA
TCTTATCTGT CCTATACAGT TAATTATAAT CAGTCTTCCT GCATTTTTCT GGTGCACTGA TTCTGAAATC ATTCAAAAGT
TTGAACTCTA GATTATTAGC TGTAGAACAT GTTTTCTGCT ATCTGGTTAT CATTCCTGTT ACCTGTTGAA TAAACATTTT
TTTTTCAATG CTGTAGCTTT GAGAATAACC CTCGTTTGGA AGGTCCAGAG TTGTTGGGTC TTGTAAGTTA CGATACAAAC
TGCTCGTGAA TAAGTTGATG TGGTAGGATC TCTCTCTCTA TATATATATA TTCTAAAATT CAAGTGTATT ACCTCATAGT
GTAATGGGCA GTGGTAAATG TAATCTCTGG TATATGTAAA TTTACATACT GAAGAGCATT GGCATTTGTA ACAATATTAT
GATCTGACAA TGATTTTGAG ACTTGAATAT CATCTATTTT ATGTAATACT AGAAAAATTC GACTTGGTT

>Vigan.03G055100.01
TGAAAAACTA AAACTATATA GTATATTATA AAATCGAAGC TCGCCATGTT TTACTGCTCC GTGTTATTCC CAAAGCCGAT
ACTTCCTTTT CAAGTCTTTT CTCTTTCTCT CTCACAAGAT TCTTCCCTCT TCCTTCCTCT CTCTCTAGAA CTTCGTCCTT
TGCTTTCGTT CTTCTCTGCG CGGTCGTTGC GAACCGACGA ATAAGAGCGA TAACCCTAAC ACGGCAGTAG AGGTGTACGG
TTGAAGCTCA GATCAGCCAT GGCAGCAGCA ACCTGCACTT CCATGCGGTT CCTACTTTCA GTTTCCCTAA CCCTAACTCT
GCTCCGCCTC GGCGCCTCCA ATTCCGAAGG CGATGCGCTG TACACGCTCA AACGGAGCCT GTCGGACCCG GACAACGTCC
TTCAGAGTTG GGATCCCACG CTCGTGAGTC CGTGTACTTG GTTCCACGTC ACCTGCAACC AGGACAACCG AGTCACTCGA
GTGGATCTTG GTAACTCTAA CCTATCTGGA CATTTGGTTC CGGAACTTGG GAAGCTGGAG CATCTGCAGT ATCTTGAGTT
GTACAAAAAC AACATTCAAG GAACTATTCC TCCAGAACTT GGAAACCTAA AGAGTCTAGT TAGCTTGGAC CTGTACAACA
ACAACATATC AGGCACCATT CCGTCTTCAT TGGGGAAATT GAAGAATCTT GTCTTTTTAC GACTAAATGA CAACCGACTT
ACTGGCCCTA TCCCCAAGGA TCTTGCTGCT GTTTCAAGCC TTAAAGTAGT GGATGTCTCC AACAATGATT TATGCGGTAC
AATTCCTACC TCTGGGCCAT TCGAGCATAT TCCATTGAAT AACTTTGAGA ATAACCCTCG TTTGGAAGGT CCAGAGTTGT
TGGGTCTTGT AAGTTACGAT ACAAACTGCT CGTGAATAAG TTGATGTGGT AGGATCTCTC TCTCTATATA TATATATTCT
AAAATTCAAG TGTATTACCT CATAGTGTAA TGGGCAGTGG TAAATGTAAT CTCTGGTATA TGTAAATTTA CATACTGAAG
AGCATTGGCA TTTGTAACAA TATTATGATC TGACAATGAT TTTGAGACTT GAATATCATC TATTTTATGT AATACTAGAA
AAATTCGACT TGGTT

>Vigan.03G055100.01
ATGGCAGCAG CAACCTGCAC TTCCATGCGG TTCCTACTTT CAGTTTCCCT AACCCTAACT CTGCTCCGCC TCGGCGCCTC
CAATTCCGAA GGCGATGCGC TGTACACGCT CAAACGGAGC CTGTCGGACC CGGACAACGT CCTTCAGAGT TGGGATCCCA
CGCTCGTGAG TCCGTGTACT TGGTTCCACG TCACCTGCAA CCAGGACAAC CGAGTCACTC GAGTGGATCT TGGTAACTCT
AACCTATCTG GACATTTGGT TCCGGAACTT GGGAAGCTGG AGCATCTGCA GTATCTTGAG TTGTACAAAA ACAACATTCA
AGGAACTATT CCTCCAGAAC TTGGAAACCT AAAGAGTCTA GTTAGCTTGG ACCTGTACAA CAACAACATA TCAGGCACCA
TTCCGTCTTC ATTGGGGAAA TTGAAGAATC TTGTCTTTTT ACGACTAAAT GACAACCGAC TTACTGGCCC TATCCCCAAG
GATCTTGCTG CTGTTTCAAG CCTTAAAGTA GTGGATGTCT CCAACAATGA TTTATGCGGT ACAATTCCTA CCTCTGGGCC
ATTCGAGCAT ATTCCATTGA ATAACTTTGA GAATAACCCT CGTTTGGAAG GTCCAGAGTT GTTGGGTCTT GTAAGTTACG
ATACAAACTG CTCGTGA

>Vigan.03G055100.01
MAAATCTSMR FLLSVSLTLT LLRLGASNSE GDALYTLKRS LSDPDNVLQS WDPTLVSPCT WFHVTCNQDN RVTRVDLGNS
NLSGHLVPEL GKLEHLQYLE LYKNNIQGTI PPELGNLKSL VSLDLYNNNI SGTIPSSLGK LKNLVFLRLN DNRLTGPIPK
DLAAVSSLKV VDVSNNDLCG TIPTSGPFEH IPLNNFENNP RLEGPELLGL VSYDTNCS*