GBrowse Details

Vigan.03G052900.01

Basic Information:
Name: Vigan.03G052900.01
Multiple alignment
Variant Information
Position: Chr03:5010354..5014018 (- strand)
Length: 3665
Functional Information:
Description: Similar to Translational elongation factor 1 subunit beta. [T2DP50, Phaseolus vulgaris]
GO: Biological Process: translational elongation (GO:0006414)
Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853)
Molecular Function: translation elongation factor activity (GO:0003746)
InterPro: Translation elongation factor EF1B, beta/delta chains, conserved site (IPR001326)
Glutathione S-transferase, C-terminal-like (IPR010987)
Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange (IPR014038)
Translation elongation factor EF1B/ribosomal protein S6 (IPR014717)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:69.44,126.83,114.31,70.12,185.49,310.52,150.64,109.06
Arabidopsis thaliana homolog: AT5G12110.1
Automatic updates:
Name: NM_001249608 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max elongation factor 1-beta (ELF1B), mRNA.
PubMed ID: 28319089 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:5010354..5010700 (- strand)
Length: 347
Type: three_prime_UTR
Position: Chr03:5010701..5010864 (- strand)
Length: 164
Type: CDS
Position: Chr03:5011143..5011256 (- strand)
Length: 114
Type: CDS
Position: Chr03:5011526..5011643 (- strand)
Length: 118
Type: CDS
Position: Chr03:5013395..5013467 (- strand)
Length: 73
Type: CDS
Position: Chr03:5013581..5013697 (- strand)
Length: 117
Type: CDS
Position: Chr03:5013806..5013891 (- strand)
Length: 86
Type: CDS
Position: Chr03:5013892..5014018 (- strand)
Length: 127
Type: five_prime_UTR

>Vigan.03G052900.01 class=Sequence position=Chr03:5010354..5014018 (- strand)
GTTGGGACTG ATCTAGGGTT TGTGACTATG CAGACTATAA ATATCAATCA TTGAACACAA GCAGAAGCTT TTTCTATTCT
TCCCACTCCA CACTCTGCAT TGCCACTCTT CTATTCAATC ACACCAGATG GCTGTCACCT TCTCAGATCT ACACACCGAA
GAGGGTATCA AAACCCTCGA TCAATTCCTT TCTGGGAAAA CCTATATTTC TGGGTAACAC TTATACCATT CACTCAATTT
CTGTTAAAAA ACCAATCTTT CACTGTTTCT GATATTTGGG TGATTGAATT TGTGTGTGGC TTATTTTTTG TTTGACTTCA
GGGATCTATT CACAAAGGAT GATATCAAAG TGTATGCAGC TGTTGTGGAA AAGCCTGGGG ACTCTTTCCC CAATGCTGCC
AAGTGGTACG ATGCTGTCTC TTCTCATCTT GCCTCAAGGT TTGTTCCTCT CTCACTTCAT TTCCTCTTTT TTTCTGCTGC
AATTCTGCTT TTGTTATTTT ATTTTTGTCG GATTTTTCAA TTTTTGTTAA TGCTAAATTT TATTTGAGTA GCTTCCCTGG
GAAGGCTCAA GGGGTTAGAT TCAGTACCGT AGCTGCTCCA GCTGAAGCTG CACCTGCCAA ATCGGTATGT GTTTTCTTTA
ATCTTACATT TGTTGTCTCT GTAATTTTCT TTTAAAAAAA TCGTTTCTTT TATTGAAAAT GCATAAATAA TTTAGTCATA
AATCGTGAAT TTTGTTGTTG ATAGGAAACT AAAGGACAGA CCTTTTGTAA ATAAGAGTGT GATGGTTGGT GATTGCCATG
CATATAGTGG TAGGTTATCA ATCTAAATTT TTATAGTTGT GTTGTGGAGC AGCTATGAAG TTAGGGTTAT GAGAGAGGTA
TGGGAATGAG AGGCATGACA CTATGGGACC TGGATTCCCT TCTGTCTGAA ATGTAATTGC AGAGAATCTT TAATTGAGTC
ATTGAATTAT GACTGCAGGA CCTTGCACTT GCAGTTGCCT TTTGTGACTG CTGGGAATTT GGGTCCTATT TCATAGAAGA
GATAGGAAGT GGCTTGCATG CACTTCAAGA GTGTGTGTGA AAGTGCAATC TTTACCAGTT ATTTTGTGTT TCAAACTTTA
TAAGGTTAAT AGAATATGAA TGAAAGAAAC ATCTTGGGAT TATGATTCCA GAGTTGGCTG AATGAAATTT GAAAATATAG
AGTCCAGGTC TGAAATGAGA GGCATGGCAC TAAGGGACCT GGATTCCCTT CTGTCTTAAA TGTAATTGCT GAGAATCTTT
AATTGAGCCC TTGGATTATT TTATGACATG ATTCAAGTGC TTGCTAATAA TCAAGTTATT ACCTCAATGC ATTCATTTCT
CCCATTTTTT ATCCATCCCA AAGATTTTCT TTTTCATTTT TAATTTTCTT ACTCGCCACA AGGCACTTTT TTTTTACCTT
TCAATATTTT GACCTTGTAA CATCTCAAAT TTAAAACTAT CACTCTAACA GAAAGAGAAT ATTTAAAAAT TGTCAAACTT
GGAAACCTTG GATTTGTGCT TAAAATAGAA AACAAAGCAA TATATTATTA TTTTCTTTCA AAAATATACT TCCATTTAGG
GGAACACCTG GTTGAATTTA CGTTAATATT CAGTTTTGGA AAGAGCAGAG CTTGAATTTT TAACCATACT AATGTGAAAT
GTTTAACATG TAGTTGCTAT TCCTGAATGA GATAGTTTTT AGCTAAGATA GCTACTTTGA AGGTACATTG TAGAGCTGAA
CAATACTATT TCTTAGAAAG TAGATCTTAA AGCTCACTTA ATCTCACAAA AATTGTCTTA TAAAGAATAG ATTTGTATCC
ATTTATATAT TATAACTTGT CTATATTCCA GATCAATGTG GAATCTCCAA TACACCCTCT TTCTAAGGAT TGAATATAGC
CGGTGTGATA GTGAGTGATA CAATAAACCC AATAAATTTC AATAAAATGG GTTTTGAATC ATCTTAAAAG TGGAAAACGT
AAAAAAATGT CTAAAAGAGT GTAATTGTCT CTTAGCTGAT TCATTCATAT TTTTTACATC AGTAAAATAC AAAAGATGAG
TTAACCTATT CAAAAAGTTA ACCCCTCACA CTAGCTAAGC GATTCTGACA CTATTAAAAC GAGATAGTTA TCTTGATTGG
GTTCATCAAG ATGTGTTTAC TAAGTAAACT CGTTATCTAG GATAACACTA TTAGAGGCAG TACACGTATT CTGGAATTCT
AGAATATAAA CTTTTGACTT TTTCTTGTAT GCTGATACTT ATTGTGAAAT GTTATATATT ATTGTAGCTG TTCAGTAGCT
GCTAATGTGA ACTTGTTCAA CTGATGTAAT AATTGGGATT TATTTGAATT GTCAGGCTGC TACTGCTGAT GAAGATGATG
ATGATCTTGA TCTCTTTGGT GACGAGACAG AGGAGGATAA GAAGGCAGCA GAGGAAAGGG AGGCTGCTAA AAAGCCTGCC
AAGAAAAAAG AGAGTAAGCT TTCTTAAGAG CACGGTGACA GTAATTTCTG GTCCACGAAA CATTTCCCAT AAATAAAATA
GATAGAAGCT GTTCTGGACT TTGTTTAATT CAAGTAAAAT TGTCTTGCTA TTTGGGAAAC GTAGAAACTA GGCATGTTGC
TATACAGTAG AACAATGGTT GAAATTTATG AGATCTTGTC ACATACAGGG GCTTTTTCTT ATCCCTATAT TTTACTTCAT
TGCTGAAATT GTTGGAAACT GTAACTGAAT GACGTTGTAT AGGTGGCAAG TCTTCTGTCC TACTCGATGT CAAGCCTTGG
GATGATGAGA CCGACATGAA GAAGCTGGAA GAGGCTGTCC GCAGTATTGA GATGCCTGGT TTATTGTGGG GAGCATGTAT
GTTCAAAGTT TCATAAACTT TTCTCACTCA AATCTGATCC ATTCACTATA ATGGCTATGC ATTGTCTGTA AATTTTGTTA
TCCTATCAGT CAATCAGAAA TCAGTGTTAA CATGATTTTT AAGACAGTCA TTGTTTAAGT CCAAAGAAAG CTACTTTACA
TAGTAGTTTG TGATTGAAAG ACATTGTAAA CCTGCCTTAT AATGTAAGTG TATAATTATC TTTTTCTTGA AAACATTACA
ATGTATCTAA AATTGCTTGT TTTAATTGAT ACAGCCAAAC TGGTGCCAGT GGGATATGGA ATCAAGAAGT TGCAGATCAT
GATGACTATT GTGGATGACC TTGTATCTGT GGACACCCTC ATCGAAGAAC ACCTGACTGT TGAGCCATGC AACGAGTATA
TCCAAAGTTG TGACATTGTT GCATTCAACA AAATTTAAGT TTTCTTGTTG GATTTCGAGT TTGGCCATTT TCAAGCGGCT
GATCAGACTC TGAGTCTGAT TGATACTCCC TCCCTTTCAT TCTTCGTGTT TGGTATGTTT CTGTAGTGGT TTTGTTGCAA
GAATTGTGAG AAGGAAAACA GATAGATATA CTGAGTATCC ATGTTATGGT GTAACTTTGA ATATTACTTT TTGATTTAGA
TACCAAGATA AATGAACAAA TGTTCTTGCA TTTAATTGTT TATAAGTTTC TCAGCTCTAA ACAGGTTTGG TTCCTGACTC
GTGACCATTA TATGTTCTTT TTAAGTTATT TATTGGTGCT TAGTTGTTGT TGTTGTTGGA ACCAA

>Vigan.03G052900.01
GTTGGGACTG ATCTAGGGTT TGTGACTATG CAGACTATAA ATATCAATCA TTGAACACAA GCAGAAGCTT TTTCTATTCT
TCCCACTCCA CACTCTGCAT TGCCACTCTT CTATTCAATC ACACCAGATG GCTGTCACCT TCTCAGATCT ACACACCGAA
GAGGGTATCA AAACCCTCGA TCAATTCCTT TCTGGGAAAA CCTATATTTC TGGGGATCTA TTCACAAAGG ATGATATCAA
AGTGTATGCA GCTGTTGTGG AAAAGCCTGG GGACTCTTTC CCCAATGCTG CCAAGTGGTA CGATGCTGTC TCTTCTCATC
TTGCCTCAAG CTTCCCTGGG AAGGCTCAAG GGGTTAGATT CAGTACCGTA GCTGCTCCAG CTGAAGCTGC ACCTGCCAAA
TCGGCTGCTA CTGCTGATGA AGATGATGAT GATCTTGATC TCTTTGGTGA CGAGACAGAG GAGGATAAGA AGGCAGCAGA
GGAAAGGGAG GCTGCTAAAA AGCCTGCCAA GAAAAAAGAG AGTGGCAAGT CTTCTGTCCT ACTCGATGTC AAGCCTTGGG
ATGATGAGAC CGACATGAAG AAGCTGGAAG AGGCTGTCCG CAGTATTGAG ATGCCTGGTT TATTGTGGGG AGCATCCAAA
CTGGTGCCAG TGGGATATGG AATCAAGAAG TTGCAGATCA TGATGACTAT TGTGGATGAC CTTGTATCTG TGGACACCCT
CATCGAAGAA CACCTGACTG TTGAGCCATG CAACGAGTAT ATCCAAAGTT GTGACATTGT TGCATTCAAC AAAATTTAAG
TTTTCTTGTT GGATTTCGAG TTTGGCCATT TTCAAGCGGC TGATCAGACT CTGAGTCTGA TTGATACTCC CTCCCTTTCA
TTCTTCGTGT TTGGTATGTT TCTGTAGTGG TTTTGTTGCA AGAATTGTGA GAAGGAAAAC AGATAGATAT ACTGAGTATC
CATGTTATGG TGTAACTTTG AATATTACTT TTTGATTTAG ATACCAAGAT AAATGAACAA ATGTTCTTGC ATTTAATTGT
TTATAAGTTT CTCAGCTCTA AACAGGTTTG GTTCCTGACT CGTGACCATT ATATGTTCTT TTTAAGTTAT TTATTGGTGC
TTAGTTGTTG TTGTTGTTGG AACCAA

>Vigan.03G052900.01
ATGGCTGTCA CCTTCTCAGA TCTACACACC GAAGAGGGTA TCAAAACCCT CGATCAATTC CTTTCTGGGA AAACCTATAT
TTCTGGGGAT CTATTCACAA AGGATGATAT CAAAGTGTAT GCAGCTGTTG TGGAAAAGCC TGGGGACTCT TTCCCCAATG
CTGCCAAGTG GTACGATGCT GTCTCTTCTC ATCTTGCCTC AAGCTTCCCT GGGAAGGCTC AAGGGGTTAG ATTCAGTACC
GTAGCTGCTC CAGCTGAAGC TGCACCTGCC AAATCGGCTG CTACTGCTGA TGAAGATGAT GATGATCTTG ATCTCTTTGG
TGACGAGACA GAGGAGGATA AGAAGGCAGC AGAGGAAAGG GAGGCTGCTA AAAAGCCTGC CAAGAAAAAA GAGAGTGGCA
AGTCTTCTGT CCTACTCGAT GTCAAGCCTT GGGATGATGA GACCGACATG AAGAAGCTGG AAGAGGCTGT CCGCAGTATT
GAGATGCCTG GTTTATTGTG GGGAGCATCC AAACTGGTGC CAGTGGGATA TGGAATCAAG AAGTTGCAGA TCATGATGAC
TATTGTGGAT GACCTTGTAT CTGTGGACAC CCTCATCGAA GAACACCTGA CTGTTGAGCC ATGCAACGAG TATATCCAAA
GTTGTGACAT TGTTGCATTC AACAAAATTT AA

>Vigan.03G052900.01
MAVTFSDLHT EEGIKTLDQF LSGKTYISGD LFTKDDIKVY AAVVEKPGDS FPNAAKWYDA VSSHLASSFP GKAQGVRFST
VAAPAEAAPA KSAATADEDD DDLDLFGDET EEDKKAAEER EAAKKPAKKK ESGKSSVLLD VKPWDDETDM KKLEEAVRSI
EMPGLLWGAS KLVPVGYGIK KLQIMMTIVD DLVSVDTLIE EHLTVEPCNE YIQSCDIVAF NKI*