GBrowse Details

Vigan.03G038400.01

Basic Information:
Name: Vigan.03G038400.01
Multiple alignment
Variant Information
Position: Chr03:2946817..2949066 (- strand)
Length: 2250
Functional Information:
Description: Similar to 4-hydroxyphenylpyruvate dioxygenase. [A5Z1N7, Glycine max]
GO: Biological Process: aromatic amino acid family metabolic process (GO:0009072)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: 4-hydroxyphenylpyruvate dioxygenase activity (GO:0003868)
Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen (GO:0016701)
InterPro: Glyoxalase/fosfomycin resistance/dioxygenase domain (IPR004360)
4-hydroxyphenylpyruvate dioxygenase (IPR005956)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:659.90,71.30,32.40,41.00,2.88,29.66, 6.19,7.81
Arabidopsis thaliana homolog: AT1G06570.1
Automatic updates:
Name: KM460829 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chloroplast 4-hydroxyphenylpyruvate dioxygenase long isoform, complete cds, nuclear gene for chloroplast product; and 4-hydroxyphenylpyruvate dioxygenase short isoform mRNA, complete cds.
PubMed ID: 25192697 NCBI(pubmed)
Status: Known Variant
Name: NM_001248219 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 4-hydroxyphenylpyruvate dioxygenase (LOC100101901), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:2946817..2947167 (- strand)
Length: 351
Type: three_prime_UTR
Position: Chr03:2947168..2947342 (- strand)
Length: 175
Type: CDS
Position: Chr03:2947542..2948833 (- strand)
Length: 1292
Type: CDS
Position: Chr03:2948834..2949066 (- strand)
Length: 233
Type: five_prime_UTR

>Vigan.03G038400.01 class=Sequence position=Chr03:2946817..2949066 (- strand)
CCCAGTCAAA ACAATACAGG ATCTCAGCCC TTGATCCAAT GTGATTTCTG TAGAAGTAAA AGCTTGGAAC GAAAATCTAA
TATATTAGGC CAAAAGAAGC GTGTCATCAT CGTGACCGTA CATTACATCA CCACCATCCT TCCACGTTGA TTCAACTGAG
GTATCTGTCT TCATTTCATC TTCATCTTCA TCGCTTCGTC CTCATCCACC TATCTCAATT ATAAGCAATC TCTATGTCTA
TATTATGCCG TTACAACCTG CTACTACACC CTGCACCTGC ATCACTCTCC ACATCCTCCT CCAATTCCAT TCCGCCACGC
GTCTCTCTCT CCCACCTTCC TCATCCTCTA CATAGCACCA CCACAACGGC CATCACACCA CAACCATATT CGAACACCAT
GGGTAACAAA ACTGAACTTC AATCAGATTT CAAGCTCGTT GGTTTCAAAA ACTTCGTCCG AACCAACCCG AAATCGGACC
GCTTCCAGGT GAACCGTTTC CACCACATCG AGTTCTGGTG CACGGACGCC ACCAACGCTG CCTCCCGCTT CTCATGGGGA
CTCGGAATGC CAATCGTTGC AAAATCGGAC TTGTCCACGG GAAACCTAAT TCACGCCTCC TACCTCCTCC GCTCCGGCGA
CCTCTCTTTT CTATTTTCCG CTCCTTATTC TCCCTCCATC TCAGCCGGTG CCGCCTCCAC TGCCGCCATT CCAACCTTCG
ACGCCGCCGC CTGCCTCTCC TTCGCCTCCA AGCACGGCCT CGGCGTGCGC GCCATCGCCT TGGAAGTTGC CGATGCGGAA
GCCGCCTTCC GTGCCAGCGT CGCTCACGGC GCCGAGGCGG TGTCTTCGCC GGCCCTCCTC GAAGGCCGCA CCGGCTTCGC
TGAGGTGCGG CTCTACGGGG ACGTCGTGCT TCGCTACGTA AGCTACAAGG ACGCGTCGCA CGCGTCCGAC ACTGATCCCT
CGCGGTGGTT CCTGCCGGGA TTTGAGGCTT CGGCAGCTGC TTTCCAAGAG CTGGACTACG GGATACGGCG GCTGGACCAC
GCCGTCGGGA ACGTGCCGGA GCTGGCGCCG GCGGTGAGAT ACCTGAAAAA CTTCACCGGA TTCCACGAGT TCGCGGAGTT
CACCGCGGAG GACGTGGGAA CGACCGAGAG CGGGTTGAAC TCGGTGGTTC TGGCGAACAA CTCGGAGACG GTACTACTGC
CTCTGAACGA ACCGGTTTAC GGAACAAAAA GGAGGAGCCA GATTGAAACG TATCTGGAAC ACAACGAAGG AGCTGGTGTG
CAGCACCTTG CGCTTGTTTC TAACGACATT TTCAGGACTC TGAGGGAAAT GAGAAAGCGA AGTTTCGTGG GTGGCTTTGA
GTTCATGCCT TCTCCTCCTC CAACCTATTA TGCCAACCTT CACAAGCGTG CCGGTGACGT CTTGACTGTT GACCAGATTA
AGCAGTGTGA GGAGCTTGGG ATTCTTGTTG ACAGAGACGA CCAGGGCACT CTGCTTCAGA TTTTCACCAA GCCCGTTGGA
GACAGGTACG TCATTTTCTC TTTTTTCCTA ATTATATTTT CGTTCTCTGT GCCTATTTTA TATTAGAGCT GCCATAACAT
ATCCATATTC TATATGTAGT TACTTTTTTT GCTCTGGTGA AATCTGAAAA TAAGTATGGA ATGAAATTTA GTAAATAAAA
AATAGAGTAT TTGAATGTTG ATGGGTTGTT GTGTTAAATG GCAGACCAAC TATATTTATA GAGATAATTG AGAGGGTTGG
ATGCATGGTG GAGGATGAGG AAGGAAAGGT GTACCAGAAG GGCGCATGTG GGGGTTTTGG GAAAGGCAAC TTTTCTGAGC
TTTTCAAATC CATTGAAGAA TATGAGAAGA CTTTGTTAGA AGCTAGAAGA ACATCCTAAT CCTTCTCCTT CTGTAACACA
CATACTCATA ATTAGCAATA ACATGTAAAA CTCTTCCAAA TGTTACACTT TTTTCTTCCT ATTTACTCAT AAAAGCTAAT
AAATTATACG GTTTCAAATA AATATCGGGT TCACATGGCC ACAAATTGTC TTACCTATCC ACACTTTAAT CTTCATACAC
ATAAATTAAG AATTACAATA AATATGTTTT TTGATATAAT TTTATTGAAA TAACTTTACT TTCTTGATAT ATTATACATT
ATATTTATTT CACATTTGTT ATATTAATAC ACCGGGTGTT TATACCCTGC TATGGCATTG GAAGGATAGT CCTTCCCTTG
TATGAAACGA 

>Vigan.03G038400.01
CCCAGTCAAA ACAATACAGG ATCTCAGCCC TTGATCCAAT GTGATTTCTG TAGAAGTAAA AGCTTGGAAC GAAAATCTAA
TATATTAGGC CAAAAGAAGC GTGTCATCAT CGTGACCGTA CATTACATCA CCACCATCCT TCCACGTTGA TTCAACTGAG
GTATCTGTCT TCATTTCATC TTCATCTTCA TCGCTTCGTC CTCATCCACC TATCTCAATT ATAAGCAATC TCTATGTCTA
TATTATGCCG TTACAACCTG CTACTACACC CTGCACCTGC ATCACTCTCC ACATCCTCCT CCAATTCCAT TCCGCCACGC
GTCTCTCTCT CCCACCTTCC TCATCCTCTA CATAGCACCA CCACAACGGC CATCACACCA CAACCATATT CGAACACCAT
GGGTAACAAA ACTGAACTTC AATCAGATTT CAAGCTCGTT GGTTTCAAAA ACTTCGTCCG AACCAACCCG AAATCGGACC
GCTTCCAGGT GAACCGTTTC CACCACATCG AGTTCTGGTG CACGGACGCC ACCAACGCTG CCTCCCGCTT CTCATGGGGA
CTCGGAATGC CAATCGTTGC AAAATCGGAC TTGTCCACGG GAAACCTAAT TCACGCCTCC TACCTCCTCC GCTCCGGCGA
CCTCTCTTTT CTATTTTCCG CTCCTTATTC TCCCTCCATC TCAGCCGGTG CCGCCTCCAC TGCCGCCATT CCAACCTTCG
ACGCCGCCGC CTGCCTCTCC TTCGCCTCCA AGCACGGCCT CGGCGTGCGC GCCATCGCCT TGGAAGTTGC CGATGCGGAA
GCCGCCTTCC GTGCCAGCGT CGCTCACGGC GCCGAGGCGG TGTCTTCGCC GGCCCTCCTC GAAGGCCGCA CCGGCTTCGC
TGAGGTGCGG CTCTACGGGG ACGTCGTGCT TCGCTACGTA AGCTACAAGG ACGCGTCGCA CGCGTCCGAC ACTGATCCCT
CGCGGTGGTT CCTGCCGGGA TTTGAGGCTT CGGCAGCTGC TTTCCAAGAG CTGGACTACG GGATACGGCG GCTGGACCAC
GCCGTCGGGA ACGTGCCGGA GCTGGCGCCG GCGGTGAGAT ACCTGAAAAA CTTCACCGGA TTCCACGAGT TCGCGGAGTT
CACCGCGGAG GACGTGGGAA CGACCGAGAG CGGGTTGAAC TCGGTGGTTC TGGCGAACAA CTCGGAGACG GTACTACTGC
CTCTGAACGA ACCGGTTTAC GGAACAAAAA GGAGGAGCCA GATTGAAACG TATCTGGAAC ACAACGAAGG AGCTGGTGTG
CAGCACCTTG CGCTTGTTTC TAACGACATT TTCAGGACTC TGAGGGAAAT GAGAAAGCGA AGTTTCGTGG GTGGCTTTGA
GTTCATGCCT TCTCCTCCTC CAACCTATTA TGCCAACCTT CACAAGCGTG CCGGTGACGT CTTGACTGTT GACCAGATTA
AGCAGTGTGA GGAGCTTGGG ATTCTTGTTG ACAGAGACGA CCAGGGCACT CTGCTTCAGA TTTTCACCAA GCCCGTTGGA
GACAGACCAA CTATATTTAT AGAGATAATT GAGAGGGTTG GATGCATGGT GGAGGATGAG GAAGGAAAGG TGTACCAGAA
GGGCGCATGT GGGGGTTTTG GGAAAGGCAA CTTTTCTGAG CTTTTCAAAT CCATTGAAGA ATATGAGAAG ACTTTGTTAG
AAGCTAGAAG AACATCCTAA TCCTTCTCCT TCTGTAACAC ACATACTCAT AATTAGCAAT AACATGTAAA ACTCTTCCAA
ATGTTACACT TTTTTCTTCC TATTTACTCA TAAAAGCTAA TAAATTATAC GGTTTCAAAT AAATATCGGG TTCACATGGC
CACAAATTGT CTTACCTATC CACACTTTAA TCTTCATACA CATAAATTAA GAATTACAAT AAATATGTTT TTTGATATAA
TTTTATTGAA ATAACTTTAC TTTCTTGATA TATTATACAT TATATTTATT TCACATTTGT TATATTAATA CACCGGGTGT
TTATACCCTG CTATGGCATT GGAAGGATAG TCCTTCCCTT GTATGAAACG A

>Vigan.03G038400.01
ATGTCTATAT TATGCCGTTA CAACCTGCTA CTACACCCTG CACCTGCATC ACTCTCCACA TCCTCCTCCA ATTCCATTCC
GCCACGCGTC TCTCTCTCCC ACCTTCCTCA TCCTCTACAT AGCACCACCA CAACGGCCAT CACACCACAA CCATATTCGA
ACACCATGGG TAACAAAACT GAACTTCAAT CAGATTTCAA GCTCGTTGGT TTCAAAAACT TCGTCCGAAC CAACCCGAAA
TCGGACCGCT TCCAGGTGAA CCGTTTCCAC CACATCGAGT TCTGGTGCAC GGACGCCACC AACGCTGCCT CCCGCTTCTC
ATGGGGACTC GGAATGCCAA TCGTTGCAAA ATCGGACTTG TCCACGGGAA ACCTAATTCA CGCCTCCTAC CTCCTCCGCT
CCGGCGACCT CTCTTTTCTA TTTTCCGCTC CTTATTCTCC CTCCATCTCA GCCGGTGCCG CCTCCACTGC CGCCATTCCA
ACCTTCGACG CCGCCGCCTG CCTCTCCTTC GCCTCCAAGC ACGGCCTCGG CGTGCGCGCC ATCGCCTTGG AAGTTGCCGA
TGCGGAAGCC GCCTTCCGTG CCAGCGTCGC TCACGGCGCC GAGGCGGTGT CTTCGCCGGC CCTCCTCGAA GGCCGCACCG
GCTTCGCTGA GGTGCGGCTC TACGGGGACG TCGTGCTTCG CTACGTAAGC TACAAGGACG CGTCGCACGC GTCCGACACT
GATCCCTCGC GGTGGTTCCT GCCGGGATTT GAGGCTTCGG CAGCTGCTTT CCAAGAGCTG GACTACGGGA TACGGCGGCT
GGACCACGCC GTCGGGAACG TGCCGGAGCT GGCGCCGGCG GTGAGATACC TGAAAAACTT CACCGGATTC CACGAGTTCG
CGGAGTTCAC CGCGGAGGAC GTGGGAACGA CCGAGAGCGG GTTGAACTCG GTGGTTCTGG CGAACAACTC GGAGACGGTA
CTACTGCCTC TGAACGAACC GGTTTACGGA ACAAAAAGGA GGAGCCAGAT TGAAACGTAT CTGGAACACA ACGAAGGAGC
TGGTGTGCAG CACCTTGCGC TTGTTTCTAA CGACATTTTC AGGACTCTGA GGGAAATGAG AAAGCGAAGT TTCGTGGGTG
GCTTTGAGTT CATGCCTTCT CCTCCTCCAA CCTATTATGC CAACCTTCAC AAGCGTGCCG GTGACGTCTT GACTGTTGAC
CAGATTAAGC AGTGTGAGGA GCTTGGGATT CTTGTTGACA GAGACGACCA GGGCACTCTG CTTCAGATTT TCACCAAGCC
CGTTGGAGAC AGACCAACTA TATTTATAGA GATAATTGAG AGGGTTGGAT GCATGGTGGA GGATGAGGAA GGAAAGGTGT
ACCAGAAGGG CGCATGTGGG GGTTTTGGGA AAGGCAACTT TTCTGAGCTT TTCAAATCCA TTGAAGAATA TGAGAAGACT
TTGTTAGAAG CTAGAAGAAC ATCCTAA

>Vigan.03G038400.01
MSILCRYNLL LHPAPASLST SSSNSIPPRV SLSHLPHPLH STTTTAITPQ PYSNTMGNKT ELQSDFKLVG FKNFVRTNPK
SDRFQVNRFH HIEFWCTDAT NAASRFSWGL GMPIVAKSDL STGNLIHASY LLRSGDLSFL FSAPYSPSIS AGAASTAAIP
TFDAAACLSF ASKHGLGVRA IALEVADAEA AFRASVAHGA EAVSSPALLE GRTGFAEVRL YGDVVLRYVS YKDASHASDT
DPSRWFLPGF EASAAAFQEL DYGIRRLDHA VGNVPELAPA VRYLKNFTGF HEFAEFTAED VGTTESGLNS VVLANNSETV
LLPLNEPVYG TKRRSQIETY LEHNEGAGVQ HLALVSNDIF RTLREMRKRS FVGGFEFMPS PPPTYYANLH KRAGDVLTVD
QIKQCEELGI LVDRDDQGTL LQIFTKPVGD RPTIFIEIIE RVGCMVEDEE GKVYQKGACG GFGKGNFSEL FKSIEEYEKT
LLEARRTS*