GBrowse Details

Vigan.03G030800.01

Basic Information:
Name: Vigan.03G030800.01
Multiple alignment
Variant Information
Position: Chr03:2391291..2394957 (+ strand)
Length: 3667
Functional Information:
Description: Similar to Uncharacterized protein. [I1M6Q8, Glycine max]
GO: Biological Process: vesicle-mediated transport (GO:0016192)
Biological Process: Golgi vesicle transport (GO:0048193)
Cellular Component: membrane (GO:0016020)
Molecular Function: protein binding (GO:0005515)
InterPro: Target SNARE coiled-coil domain (IPR000727)
t-SNARE (IPR010989)
Syntaxin 6, N-terminal (IPR015260)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.51,9.57,10.78,13.54,11.80,12.18,8.82,16.03
Automatic updates:
Name: NM_001252992 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max syntaxin-61-like (LOC100795447), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:2391291..2391379 (+ strand)
Length: 89
Type: five_prime_UTR
Position: Chr03:2391380..2391433 (+ strand)
Length: 54
Type: CDS
Position: Chr03:2391843..2391953 (+ strand)
Length: 111
Type: CDS
Position: Chr03:2392740..2392853 (+ strand)
Length: 114
Type: CDS
Position: Chr03:2393029..2393219 (+ strand)
Length: 191
Type: CDS
Position: Chr03:2393750..2393840 (+ strand)
Length: 91
Type: CDS
Position: Chr03:2394210..2394275 (+ strand)
Length: 66
Type: CDS
Position: Chr03:2394417..2394527 (+ strand)
Length: 111
Type: CDS
Position: Chr03:2394528..2394957 (+ strand)
Length: 430
Type: three_prime_UTR

>Vigan.03G030800.01 class=Sequence position=Chr03:2391291..2394957 (+ strand)
GGAAGAACAC ATGAAGCTGA AGCAGAGTGT GTCACTGTTC CCCAATTTTC GTGTGTTTAG TGTGAAGCAG TAGGAAACAG
CAGTACACTA TGCCTTCAGC TCAAGATCCA TTCTATGTTG TGAAGGAGGA GATTCAAGAA TCTGTAAGCA TTTTCTTTTT
CCCCATATTA AGTAGGTTTT CTTGTAAGTT CAATTATGAA AATGAACTGA ACTTGTTATT TTTGTCATAA ATCATGCGTT
CTACTTGAAA TTTCTGCATC ATTTCTCTGT TACTCGTACA ACTGGATCCA GTATTTTACG TGATTCCTCT TCGTCAATCT
TAGCTGAAAC TATTAACCGG GATATTTTTG CTTCTAATAT CATAAGTAAT CGATCTGAGT ATGCTATTTT TGTCTGCAAA
TTTGGAATTT TGAAGAAAGC CCTGTTGCGA TCTGTAACTG TTGTATGTGT AATTGAAGCA GGAAATAGAA GTTGGGATTT
TGTTAATGGC TGCATGAGTT TTTTTGGATG TTATGCAATT TATTGACTGA CTAATTTTCA TTTTCTGGTA AGATTGATAA
GCTGCAATCT ACTTTTCGCC AATGGGAAAA AGCTGCTGAT GATGGCGAGC GATCCAATCT TTCAAAGGAA GTTCTTACTA
GCTGTGAAAG CATTGATTGG CAGGTATACC AATTGTGTAT GTTGAACCGG TGACAAGTTA GTTGGCCTGT AAATATTTGT
TTTAAATGAG TTTTATTCAT TCTTCCAGTT TGGTGCTACC ATCGATTGTA GGAATTTGGG TTTGGGTGTT ATTAAATAGA
CATTCGAGGA ATGTTTGGAT TATAGTACAA TCTAGGTCAG CGGGAAGAGG TATATTTCTT TTCTTGATTG CGGATATTTT
TAGTGTAGAA AGGAAAATGA GGGATTTGTA CTTAACCATC CGAAATGCTT CTGTTGAATG CTGCAATTTA TGCCATTCAC
ATGATATTCT TCTATCATAA AATCAAAAGG AATAGTTAAC CCTGTCATCA TTGCAATGAT GCAAAATATA TGTAAACATA
TTTGCTAAAT TATATTGTTA ATATCAAAGC TCATTAGTTA ATTATAAAAT GTATTATATC CATGTATTTT TATTTAATCA
CTCCATTTTT TCCCCCGTTA GGCATCCAAG CAAGAAGAGC AAAATCACCA TTAACCCTCT TCTCCTTTTC CCCTAATTTG
ACTTTGCTCT CCCCTTTTGG CAATATAGGA AAGGGTAAGG AGGGGAGTGA AAATGAAGTG AGGTGAAAAT GTTTTGATTT
TCAATCTTTG ATGGTTGTTA AATTCGTAGT AGAGAAGAGG TAGAAAGTTG CTTGTAGCTC TAGAAGCACA CTCTTAGTCT
AGCCTCCCTT TGTCACACAT CTTAGACTAT TGTTTATTTT GCAATAGAAC CTATTCAAAC TGCTGAAATA CGATTTTTTT
GATAGAAAGG TAGATGAATT GGACAAAGCA ATTTCTGTGG CCTCTAGAGA TCCTTCTTTG TATGGCATTG ATGAAGTGGA
GCTTGAGAAC AGGAGGAGGT GGACCAGTGA TGCTCGTAGC CAGGTATCTG TAACTACTGA ACTTGATTAA GAGTTAGGAG
AATACTGTTG CTTTTTTTCT CAACATAATG TACAATTGTT CGTGTGGTAT TTCTCTATTG GTAGCTCGCA TTAGATTTCC
TTCTCTCTCT CTCTTTTTAT CTGTATGGTG CTCTTGAATG ATTGGAGTTC ATTATTAGGT GAGCACAGCA AAGAAAGCAA
TGGAAGCGGG AACACGCTCA AATATAACAA ACAATGCTAA TCTAAATGGG ATGCGCAGGG AATTAATGAG GCTTACTAAT
TCTCATCAAT CTGCGTCTGA CCCATATGCT ACCCAGGATA ACGACGATCT CATAGAATCA GAATCGGACA GGCAGATGCT
TCTTATAAAG TACTTCTTTT CTCCCTTTCC CTTTCTCTCT CTCTCTCTCT CTCTTTTTCA TATGGCATTT AATTAAATAT
TTGTTGTTTG CCCTCCTTTT AATTGGCTTC TAGATTAAAC TCTTTGCCAG CCTCTTTAGT GCATACAAGA TGCTAAATTG
TATTTTGATT GACCAATGTT GCCCGCACCT TGGCCCTCTC CTGTTTGAGA CATAGGCGGG CTCCTCCGTA GTGGAAACAT
GAGCCTATGC TTCTTCTGCT TCTCTTGTAA TTATAAATTT CTGTTCTGTG AATTCATTGT TGCTAATCAT TTGAGTTTTA
TTTGAATCTA TTATTACTAC AAACAAAAAA TCAAAACTAA AAGGATGGAT TCCTTTTTTC TTTCCTCTGG AAGAAAAAGA
AAATGGGGGA ATGAAAAGAC TGTGTCAGGT AGCCTTAACA CAGCTAAATG CTGGTATTAA TGTTCAAGAG TCTGGGAAAA
AATCATCCTC TGGTTTCTAC TTTAGTTTTT ACACATATAT TATCTATTGG TGTTGATAGG AGACAGGATG AGGAGTTGGA
CGAACTTAGT ATAAGTGTAC AGAGAATTGG AGATGTTGGA CTTACTATAC ATGATGAGCT CGTTGCACAG GTATATTTGG
CATATTTGAG AAGATTTTTT GTCTGTGATG GTATCATTTT TCTTGTTGGG AATACCTGGT TTCCACCATG TGACTTGGAG
ATCACTGGTT TAAATCCCAG AAGCAGCCTC TCTCCCCTTG CAGGGTCAAG GCTGCATATT TCTATCATAC CAGAACACCA
ATAGGGGGGA GTCCGTCATG CACTGGATTC CCTTTTATTC TTACTATTTT TTGTTTCAAA AGTTGGAAGC TAGACAACAC
TGTTGCACTT AAGTTATGTG TTTCGTTTGA GTGTTTTAAT AAGAGTTGTG TTCTAATGTC TTTTTTTGTT TCTGTGGAAA
GTTTCTCTTT CTAAATTTGT CAAAGCCTTG ATGTTTCAGG AGAAGATTGT TGATGAACTG GGTAATGAGA TGGACAGTAC
ATCCAATCGT CTAGATTTTG TCCAAGTGAG TTTCTGCTTC TAGTTTCCAT TGTCTCATTA AAATGTTTAT GATCTATCTG
GCTTATTGCT GTCATTAATT AGCAATAACA AAAGGGGGAA ATATTGAATG TTAAAGCTGA ATGTCTCTCA TTGTTTATGA
TATCAGAAAA AAGTAGCAAT GGTCATGAAG AAGGCTAGTG CAAAGGGCCA GATCATGATG ATCCTGGGTT TGCTGGCTCT
GTTCATGTTC CTCTTTATCT TGGTATTCTT CACCTAGTCA TTGAGACAAA AGTTTTCGTG TTTGTACATG AAAAAGGATC
TAAAGCTTTT GTCAAGATAC CAGATTATTG GGAAATCCAT TATGCTTAGA AATCAAGTGG AAGCCTCTTT GGTTTGTTGA
AGGCAGTGAA ATTTTTTATT ATGATGAAAA GGGAAGCAAT GTGCTTGAAA ATATTACAAG AAGATTTGGT TTCTGGCAGT
ATAGACTGCT AATGTGATTT AAATGAGTTG TATTCGTTTT CAAGATTGCA ATGTTTGATG TTCTTTTTTT GAATTCATAC
ATGTACCAAG ATAGATAGCT TATGACAGAT TTTTATACAA ATTAACCCAT TATTTACTTG CTCACAGGGA CAAGAATGAC
GAGTTGCTGT TTTTATCACG TTACAAACTG AAATGATGAC AAAAAAAAGG CTGTTGTGTT ATCTAAA

>Vigan.03G030800.01
GGAAGAACAC ATGAAGCTGA AGCAGAGTGT GTCACTGTTC CCCAATTTTC GTGTGTTTAG TGTGAAGCAG TAGGAAACAG
CAGTACACTA TGCCTTCAGC TCAAGATCCA TTCTATGTTG TGAAGGAGGA GATTCAAGAA TCTATTGATA AGCTGCAATC
TACTTTTCGC CAATGGGAAA AAGCTGCTGA TGATGGCGAG CGATCCAATC TTTCAAAGGA AGTTCTTACT AGCTGTGAAA
GCATTGATTG GCAGGTAGAT GAATTGGACA AAGCAATTTC TGTGGCCTCT AGAGATCCTT CTTTGTATGG CATTGATGAA
GTGGAGCTTG AGAACAGGAG GAGGTGGACC AGTGATGCTC GTAGCCAGGT GAGCACAGCA AAGAAAGCAA TGGAAGCGGG
AACACGCTCA AATATAACAA ACAATGCTAA TCTAAATGGG ATGCGCAGGG AATTAATGAG GCTTACTAAT TCTCATCAAT
CTGCGTCTGA CCCATATGCT ACCCAGGATA ACGACGATCT CATAGAATCA GAATCGGACA GGCAGATGCT TCTTATAAAG
AGACAGGATG AGGAGTTGGA CGAACTTAGT ATAAGTGTAC AGAGAATTGG AGATGTTGGA CTTACTATAC ATGATGAGCT
CGTTGCACAG GAGAAGATTG TTGATGAACT GGGTAATGAG ATGGACAGTA CATCCAATCG TCTAGATTTT GTCCAAAAAA
AAGTAGCAAT GGTCATGAAG AAGGCTAGTG CAAAGGGCCA GATCATGATG ATCCTGGGTT TGCTGGCTCT GTTCATGTTC
CTCTTTATCT TGGTATTCTT CACCTAGTCA TTGAGACAAA AGTTTTCGTG TTTGTACATG AAAAAGGATC TAAAGCTTTT
GTCAAGATAC CAGATTATTG GGAAATCCAT TATGCTTAGA AATCAAGTGG AAGCCTCTTT GGTTTGTTGA AGGCAGTGAA
ATTTTTTATT ATGATGAAAA GGGAAGCAAT GTGCTTGAAA ATATTACAAG AAGATTTGGT TTCTGGCAGT ATAGACTGCT
AATGTGATTT AAATGAGTTG TATTCGTTTT CAAGATTGCA ATGTTTGATG TTCTTTTTTT GAATTCATAC ATGTACCAAG
ATAGATAGCT TATGACAGAT TTTTATACAA ATTAACCCAT TATTTACTTG CTCACAGGGA CAAGAATGAC GAGTTGCTGT
TTTTATCACG TTACAAACTG AAATGATGAC AAAAAAAAGG CTGTTGTGTT ATCTAAA

>Vigan.03G030800.01
ATGCCTTCAG CTCAAGATCC ATTCTATGTT GTGAAGGAGG AGATTCAAGA ATCTATTGAT AAGCTGCAAT CTACTTTTCG
CCAATGGGAA AAAGCTGCTG ATGATGGCGA GCGATCCAAT CTTTCAAAGG AAGTTCTTAC TAGCTGTGAA AGCATTGATT
GGCAGGTAGA TGAATTGGAC AAAGCAATTT CTGTGGCCTC TAGAGATCCT TCTTTGTATG GCATTGATGA AGTGGAGCTT
GAGAACAGGA GGAGGTGGAC CAGTGATGCT CGTAGCCAGG TGAGCACAGC AAAGAAAGCA ATGGAAGCGG GAACACGCTC
AAATATAACA AACAATGCTA ATCTAAATGG GATGCGCAGG GAATTAATGA GGCTTACTAA TTCTCATCAA TCTGCGTCTG
ACCCATATGC TACCCAGGAT AACGACGATC TCATAGAATC AGAATCGGAC AGGCAGATGC TTCTTATAAA GAGACAGGAT
GAGGAGTTGG ACGAACTTAG TATAAGTGTA CAGAGAATTG GAGATGTTGG ACTTACTATA CATGATGAGC TCGTTGCACA
GGAGAAGATT GTTGATGAAC TGGGTAATGA GATGGACAGT ACATCCAATC GTCTAGATTT TGTCCAAAAA AAAGTAGCAA
TGGTCATGAA GAAGGCTAGT GCAAAGGGCC AGATCATGAT GATCCTGGGT TTGCTGGCTC TGTTCATGTT CCTCTTTATC
TTGGTATTCT TCACCTAG

>Vigan.03G030800.01
MPSAQDPFYV VKEEIQESID KLQSTFRQWE KAADDGERSN LSKEVLTSCE SIDWQVDELD KAISVASRDP SLYGIDEVEL
ENRRRWTSDA RSQVSTAKKA MEAGTRSNIT NNANLNGMRR ELMRLTNSHQ SASDPYATQD NDDLIESESD RQMLLIKRQD
EELDELSISV QRIGDVGLTI HDELVAQEKI VDELGNEMDS TSNRLDFVQK KVAMVMKKAS AKGQIMMILG LLALFMFLFI
LVFFT*