GBrowse Details

Vigan.03G017100.01

Basic Information:
Name: Vigan.03G017100.01
Multiple alignment
Variant Information
Position: Chr03:1316177..1318539 (+ strand)
Length: 2363
Functional Information:
Description: Similar to Uncharacterized protein. [I1M6F0, Glycine max]
InterPro: Red chlorophyll catabolite reductase (IPR009439)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:48.16,9.94,28.89,35.31,14.37,58.90,13.83,16.56
Arabidopsis thaliana homolog: AT4G37000.1
Automatic updates:
Name: NM_001254021 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max red chlorophyll catabolite reductase, chloroplastic-like (LOC100780934), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:1316177..1316225 (+ strand)
Length: 49
Type: five_prime_UTR
Position: Chr03:1316226..1316621 (+ strand)
Length: 396
Type: CDS
Position: Chr03:1317496..1318107 (+ strand)
Length: 612
Type: CDS
Position: Chr03:1318108..1318539 (+ strand)
Length: 432
Type: three_prime_UTR

>Vigan.03G017100.01 class=Sequence position=Chr03:1316177..1318539 (+ strand)
AAACAGTCTG AAAGGATGAA AACAGTGTAA GAGAGAATAA TAGTTACAGA TGATGGAAGT GATGATCTGT GACCATTTTC
GGTGTTCTCC ACTTTCCATC TTATCTTCTT ATCGTTCTTC TTTTTCTCCT TCAACACGTT ACCCTCTCTC TGTACCTTCT
TATTCTCCTT CTTTCAGGCT TAAACCTTCT TCTTCATCTC TCTCTTCCTC TCGCATGGAA GAGACCCAGG AGACCCACGA
CCATGGCCGC TCCAAATTCA TTGACTTTCC GTTCGTTTCA GCTGCCCAGA AGAATCTGAT GGTCGAACTC GTTTCGAAGC
TTGAGGATCG CTTTCATTCT CAGCTTCTTC CTTGCACACT CCCCCCTGAT GTTCAGTATT ACCAGAGCCA AACTGGCACT
GCCCAAGCTT CCCTTCATAT CAGATCAGCC ACTGATGACT CTCCGGTGAA TTTTCTCTTC TTAAATTCCT CAATTTCAAT
ATAAAGTTTT CATTTTTTTT TCTCTTGTCT TCATTTTTCT TCCCAATCAA TGTCTTTTTT ACTTGTTTTG TAGTGGTTGA
TGTCTTTTTT TTTTAATGAA GTATTGGCGT TAGAAAGAGA TCAGGGTATC GGGTTGATAA TTAGGTGCTC AAACTACTAC
CATTTCCGGA TTAGATTCTG AAGCAAATGG GCGATCTAGT ATTTTTGTCC TTTTCTGTGC TTCATTGGAT AAACCATCAA
ATTCATCCCT AAACTGCTAC TGTCTCTCTA TAGTACATAA ATTATATATA TAATCCATCA ATCACTAAAA ATATGCCGGG
GAGTTATCCA TTATTGAAAG TGCTTTTTTG ATAGTCACTC AATACTTTTT TTATGCTGAG AGAAGGTGAT GAGTAATACT
GCCTAGACTT CATTGATGAT TTACCTGTAC ATACAATTTG AATAGCAATG GAAAAGGTTA AACATTACCA AGTTTATGAG
TTGTTTGCAA GTAGACCAAG ATGAAATCTC ATTACTGAAA TTCCTTCTTA GACTCTTCCT TGTTGATTGA AATTTATACC
CAAAAATTAC ATTTTCAGGG GACAATTATT AAATTAGGGT GAAACATACT AAAATTCGTG TTTTTTTTTT AATGATTTTC
AAGCAATTAC AAAGAGTATG ACACTAAAAT TATTCCATAA AGAATCTGTT TTCTTATCGT GAATTGATGG TTTTGTTCTT
TGTTAACCTT GTGCTATCAC TAATTTTTCT CTACCCTCCA GTGGATTTAT TCCGTATAGA AGAAAAATGA AGGCACTTGT
TTTGTACTGA ATTTAATCTT CTTTTTATGT TTGTCTCAGG TAGATTTTGT GTTGGGAAGC TGGGTGCACT CTGAGTTACC
AACAGGAGGG TCCTTAGATA TAACTAGTCT TTCAGCCTAT CTTAACAGTT CAACCGATGC ACCAAATTTT GTGTTTGAAA
TGATCCGCAG TAGTCCAACA ATGCTAGTTC TCATTCTTGA TTTGCCTCCC CGGAAAGACC TTGTGCTTTG GCCAGATGAC
CTCAAAACGT TCTATGAAGA CACTCAATTG GATACTCACA GGCAGGCTCT GGAAAGAGTT CCAGAGGTTA AACCATATTT
CTCTTCTTCC CTTTACATCC GCAGTGTTTC CTCCCCTACA ACCATAATGG TTCGCATTGT GACTGAAAAT GGTGGAGTAG
AACGCATGGA GGAGATCATC AGGGACCATT TGGACCCCAT TTCAAAGCAA GTATTGGGGA TCTGGTTGGA TCATTGTGCT
TGTGCCCAGC GAGATGTTGG AGAGGCAGAA AGAGCTTATC TGAAAAAAAG GGATGGTCTC ATTAGAAACA AGACAATTGA
GATTGATCTT GGTTCAAGCT TCCCCAGGTT GTTTGGTCCA GAAGTGGCAA ACCGAGTACT GGAGGCTATC AAGGGGTATT
TTACTGTCTA GGATTCTAAT TTATTTGGAA TTGTTGGACA TTCTGTGTTA CATACATGTA ACTAATTAGC CTTGTAGTAA
AATGAGGCTT CAGTATTCGT TGTATCTCCA GTCAAATGTG AAATCCATAA ATGATTCTGA TAGTTTCTAC TTTCTACTTT
CTCCCTCCTT TTCTTTGCTA GGGATGATTC ATGACAATGG CACTTTTCTA AGCCTTTATT GAAATCATTC CATGTGCTTC
CATTCCAAGC TCTTTGTATG ACCTGAGTTT GAAACCCCAC TACTAACTTC CTGAACTAGA AGCAAAATTT TTAAATTGGA
AGTATTTTAG CATGCTTGGA AGTATTTCTG TAAGAAATGT TGTAAAGGTT TCTATATAAT CTATTCTTGA AGTAGCCAGT
GCCATTTTTT CAAGCCATAG TTTTGGCACA AAGTGCCATT GTA

>Vigan.03G017100.01
AAACAGTCTG AAAGGATGAA AACAGTGTAA GAGAGAATAA TAGTTACAGA TGATGGAAGT GATGATCTGT GACCATTTTC
GGTGTTCTCC ACTTTCCATC TTATCTTCTT ATCGTTCTTC TTTTTCTCCT TCAACACGTT ACCCTCTCTC TGTACCTTCT
TATTCTCCTT CTTTCAGGCT TAAACCTTCT TCTTCATCTC TCTCTTCCTC TCGCATGGAA GAGACCCAGG AGACCCACGA
CCATGGCCGC TCCAAATTCA TTGACTTTCC GTTCGTTTCA GCTGCCCAGA AGAATCTGAT GGTCGAACTC GTTTCGAAGC
TTGAGGATCG CTTTCATTCT CAGCTTCTTC CTTGCACACT CCCCCCTGAT GTTCAGTATT ACCAGAGCCA AACTGGCACT
GCCCAAGCTT CCCTTCATAT CAGATCAGCC ACTGATGACT CTCCGGTAGA TTTTGTGTTG GGAAGCTGGG TGCACTCTGA
GTTACCAACA GGAGGGTCCT TAGATATAAC TAGTCTTTCA GCCTATCTTA ACAGTTCAAC CGATGCACCA AATTTTGTGT
TTGAAATGAT CCGCAGTAGT CCAACAATGC TAGTTCTCAT TCTTGATTTG CCTCCCCGGA AAGACCTTGT GCTTTGGCCA
GATGACCTCA AAACGTTCTA TGAAGACACT CAATTGGATA CTCACAGGCA GGCTCTGGAA AGAGTTCCAG AGGTTAAACC
ATATTTCTCT TCTTCCCTTT ACATCCGCAG TGTTTCCTCC CCTACAACCA TAATGGTTCG CATTGTGACT GAAAATGGTG
GAGTAGAACG CATGGAGGAG ATCATCAGGG ACCATTTGGA CCCCATTTCA AAGCAAGTAT TGGGGATCTG GTTGGATCAT
TGTGCTTGTG CCCAGCGAGA TGTTGGAGAG GCAGAAAGAG CTTATCTGAA AAAAAGGGAT GGTCTCATTA GAAACAAGAC
AATTGAGATT GATCTTGGTT CAAGCTTCCC CAGGTTGTTT GGTCCAGAAG TGGCAAACCG AGTACTGGAG GCTATCAAGG
GGTATTTTAC TGTCTAGGAT TCTAATTTAT TTGGAATTGT TGGACATTCT GTGTTACATA CATGTAACTA ATTAGCCTTG
TAGTAAAATG AGGCTTCAGT ATTCGTTGTA TCTCCAGTCA AATGTGAAAT CCATAAATGA TTCTGATAGT TTCTACTTTC
TACTTTCTCC CTCCTTTTCT TTGCTAGGGA TGATTCATGA CAATGGCACT TTTCTAAGCC TTTATTGAAA TCATTCCATG
TGCTTCCATT CCAAGCTCTT TGTATGACCT GAGTTTGAAA CCCCACTACT AACTTCCTGA ACTAGAAGCA AAATTTTTAA
ATTGGAAGTA TTTTAGCATG CTTGGAAGTA TTTCTGTAAG AAATGTTGTA AAGGTTTCTA TATAATCTAT TCTTGAAGTA
GCCAGTGCCA TTTTTTCAAG CCATAGTTTT GGCACAAAGT GCCATTGTA

>Vigan.03G017100.01
ATGATGGAAG TGATGATCTG TGACCATTTT CGGTGTTCTC CACTTTCCAT CTTATCTTCT TATCGTTCTT CTTTTTCTCC
TTCAACACGT TACCCTCTCT CTGTACCTTC TTATTCTCCT TCTTTCAGGC TTAAACCTTC TTCTTCATCT CTCTCTTCCT
CTCGCATGGA AGAGACCCAG GAGACCCACG ACCATGGCCG CTCCAAATTC ATTGACTTTC CGTTCGTTTC AGCTGCCCAG
AAGAATCTGA TGGTCGAACT CGTTTCGAAG CTTGAGGATC GCTTTCATTC TCAGCTTCTT CCTTGCACAC TCCCCCCTGA
TGTTCAGTAT TACCAGAGCC AAACTGGCAC TGCCCAAGCT TCCCTTCATA TCAGATCAGC CACTGATGAC TCTCCGGTAG
ATTTTGTGTT GGGAAGCTGG GTGCACTCTG AGTTACCAAC AGGAGGGTCC TTAGATATAA CTAGTCTTTC AGCCTATCTT
AACAGTTCAA CCGATGCACC AAATTTTGTG TTTGAAATGA TCCGCAGTAG TCCAACAATG CTAGTTCTCA TTCTTGATTT
GCCTCCCCGG AAAGACCTTG TGCTTTGGCC AGATGACCTC AAAACGTTCT ATGAAGACAC TCAATTGGAT ACTCACAGGC
AGGCTCTGGA AAGAGTTCCA GAGGTTAAAC CATATTTCTC TTCTTCCCTT TACATCCGCA GTGTTTCCTC CCCTACAACC
ATAATGGTTC GCATTGTGAC TGAAAATGGT GGAGTAGAAC GCATGGAGGA GATCATCAGG GACCATTTGG ACCCCATTTC
AAAGCAAGTA TTGGGGATCT GGTTGGATCA TTGTGCTTGT GCCCAGCGAG ATGTTGGAGA GGCAGAAAGA GCTTATCTGA
AAAAAAGGGA TGGTCTCATT AGAAACAAGA CAATTGAGAT TGATCTTGGT TCAAGCTTCC CCAGGTTGTT TGGTCCAGAA
GTGGCAAACC GAGTACTGGA GGCTATCAAG GGGTATTTTA CTGTCTAG

>Vigan.03G017100.01
MMEVMICDHF RCSPLSILSS YRSSFSPSTR YPLSVPSYSP SFRLKPSSSS LSSSRMEETQ ETHDHGRSKF IDFPFVSAAQ
KNLMVELVSK LEDRFHSQLL PCTLPPDVQY YQSQTGTAQA SLHIRSATDD SPVDFVLGSW VHSELPTGGS LDITSLSAYL
NSSTDAPNFV FEMIRSSPTM LVLILDLPPR KDLVLWPDDL KTFYEDTQLD THRQALERVP EVKPYFSSSL YIRSVSSPTT
IMVRIVTENG GVERMEEIIR DHLDPISKQV LGIWLDHCAC AQRDVGEAER AYLKKRDGLI RNKTIEIDLG SSFPRLFGPE
VANRVLEAIK GYFTV*