VIGGS:GBrowse

Vigan.03G009200.01

Basic Information:

Name:	Vigan.03G009200.01 Multiple alignment Variant Information
Position:	Chr03:675333..676890 (+ strand)
Length:	1558

Functional Information:

Description:	Similar to Chalcone reductase. [B5LY00, Glycine max]
GO:	Biological Process: oxidation-reduction process (GO:0055114)
GO:	Molecular Function: oxidoreductase activity (GO:0016491)
InterPro:	Aldo/keto reductase (IPR001395)
	Aldo/keto reductase, conserved site (IPR018170)
	Aldo/keto reductase subgroup (IPR020471)
	NADP-dependent oxidoreductase domain (IPR023210)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:258.27,2.80,12.16,5.87,33.98,1.68,32.98,0.24

Automatic updates:

Name:	NM_001367007 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max chalcone reductase CHR6 (CHR6), mRNA.
PubMed ID:	29979476 NCBI(pubmed)
PubMed ID:	29270182 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:675333..675603 (+ strand)
Length:	271
Type:	five_prime_UTR

Position:	Chr03:675604..675923 (+ strand)
Length:	320
Type:	CDS

Position:	Chr03:676069..676312 (+ strand)
Length:	244
Type:	CDS

Position:	Chr03:676394..676774 (+ strand)
Length:	381
Type:	CDS

Position:	Chr03:676775..676890 (+ strand)
Length:	116
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.03G009200.01 class=Sequence position=Chr03:675333..676890 (+ strand)
TAAAAAGTAG ATAAAGGAAA ACTTTTCATC CATCCCAGTT TAACTAAGCA AATTTGATCT TTATAGATTA AAATAAAGAA
TACAAAAGGA TGGTGGCAGA GCTGAGTATA ACCCACCTAC CTTCCAATTC AAAGTCCGCC AAAAAATTTG GAGTAGACGT
AACACTTTTG CAGTATAAAA AGGCGACAAC CTTGTAGCTA AGTTCATAAA GCGGTGCTTC TTGATCACAC CATAGTACTA
CTATACAAGA AAAAAATCCG CACTTTTTGC AATGGCTGCT GTCGAAATTC CTACGTTGGT GCTTCCAAAC TCTAGTACCC
AACAGAGGGT GCCAGTGGTC GGAATGGGTT CTGCCCCAGA TTTCACCTGC AAGAAAGACA CAAAGGAAGC AATCATCGAG
GCCATAAAGC AGGGTTACAG ACACTTTGAC ACTGCTGCTG CTTATGGCTC TGAACAGGCT CTTGGAGAAG CTCTCAAAGA
AGCAATTCAA CTTGGTCTTG TCTCTCGTCA AGATCTCTTC GTCACTTCCA AGCTTTGGGT CACTGAAAAT CATCCTCATC
TCGTTGTTTC AGCCTTGCGC AAATCACTCA GGTCATTATT GAACTCAATC TAATAACAAG TAGTTATGAA TTATACGTTA
AAAAGTCCCA CATCGATTTG AGTTGAGTTA AACTTAACTT AATCTTAATA TTATGAAAAT ATATTGATTT TGTTTTTTTG
TTTTGCTGTT GTTCAGAACT CTTCAACTGG AGTATCTCGA TCTCTATCTC ATTCACTGGC CCATCAGTTC TCAACCTGGA
AAATTCTCAT TTCCAATCGA GGTTTCAGAT CTTTTGCCTT TTGATGTGAA GGGTGTGTGG GAAGCCATGG AAGAGTGTCA
AAAGCTTGGT CTCACACGAG CCATTGGTGT GAGCAACTTT TCTGTGAAGA AACTTGAGAA TTTACTGTCT GTTGCTACCA
TCCGTCCTGT GGTGAATCAA GTAATAATCA ATCTTGTTTT TGAGTAATTT TTTTGAATGA TTGTTGATAA GATGAATTAA
TGTTTATTTG ATATTCAACA GGTGGAGATG AATCTTGCAT GGCAGCAGAA GAAGCTGAGA GAGTTCTGCA GTGAAAATGG
GATAATCATA ACTGCATTTT CTCCTCTGAG GAAAGGTGCA AGTAAGGGAG CAAATGAAGT GATGGAGAAT GAAATGCTGA
AAGAGATTGC AGAGGCTCAT GGTAAGACTA TAGCTCAAGT TTCTCTGAGA TGGTTGTATG AACAAGGAGT CACCTTCGTG
CCAAAGAGCT ACGATAAGGG AAGGATGAAC CAAAACCTTC AGATATTTGA TTGGAAGTTA ACCAAAGACG ATCTTCACAA
AATTAGTGAA ATATATCAAA ATCGTTTGAT CAATGGACCC ACCAAACCCC AACTCAATGA TCTTTGGGAC GATGAAATAT
AAATTTGGCA ACTCAAATGT TGAATTTGCC TCTGAGATTT CAATTTAAAC TTCATGTTGC TTTTGAATCA ACTTTTGTCA
TTTTGTTTTA GAGAAATGAA ACTATGAATT CATTTCTG

[show][hide][copy]TRANSCRIPT

>Vigan.03G009200.01
TAAAAAGTAG ATAAAGGAAA ACTTTTCATC CATCCCAGTT TAACTAAGCA AATTTGATCT TTATAGATTA AAATAAAGAA
TACAAAAGGA TGGTGGCAGA GCTGAGTATA ACCCACCTAC CTTCCAATTC AAAGTCCGCC AAAAAATTTG GAGTAGACGT
AACACTTTTG CAGTATAAAA AGGCGACAAC CTTGTAGCTA AGTTCATAAA GCGGTGCTTC TTGATCACAC CATAGTACTA
CTATACAAGA AAAAAATCCG CACTTTTTGC AATGGCTGCT GTCGAAATTC CTACGTTGGT GCTTCCAAAC TCTAGTACCC
AACAGAGGGT GCCAGTGGTC GGAATGGGTT CTGCCCCAGA TTTCACCTGC AAGAAAGACA CAAAGGAAGC AATCATCGAG
GCCATAAAGC AGGGTTACAG ACACTTTGAC ACTGCTGCTG CTTATGGCTC TGAACAGGCT CTTGGAGAAG CTCTCAAAGA
AGCAATTCAA CTTGGTCTTG TCTCTCGTCA AGATCTCTTC GTCACTTCCA AGCTTTGGGT CACTGAAAAT CATCCTCATC
TCGTTGTTTC AGCCTTGCGC AAATCACTCA GAACTCTTCA ACTGGAGTAT CTCGATCTCT ATCTCATTCA CTGGCCCATC
AGTTCTCAAC CTGGAAAATT CTCATTTCCA ATCGAGGTTT CAGATCTTTT GCCTTTTGAT GTGAAGGGTG TGTGGGAAGC
CATGGAAGAG TGTCAAAAGC TTGGTCTCAC ACGAGCCATT GGTGTGAGCA ACTTTTCTGT GAAGAAACTT GAGAATTTAC
TGTCTGTTGC TACCATCCGT CCTGTGGTGA ATCAAGTGGA GATGAATCTT GCATGGCAGC AGAAGAAGCT GAGAGAGTTC
TGCAGTGAAA ATGGGATAAT CATAACTGCA TTTTCTCCTC TGAGGAAAGG TGCAAGTAAG GGAGCAAATG AAGTGATGGA
GAATGAAATG CTGAAAGAGA TTGCAGAGGC TCATGGTAAG ACTATAGCTC AAGTTTCTCT GAGATGGTTG TATGAACAAG
GAGTCACCTT CGTGCCAAAG AGCTACGATA AGGGAAGGAT GAACCAAAAC CTTCAGATAT TTGATTGGAA GTTAACCAAA
GACGATCTTC ACAAAATTAG TGAAATATAT CAAAATCGTT TGATCAATGG ACCCACCAAA CCCCAACTCA ATGATCTTTG
GGACGATGAA ATATAAATTT GGCAACTCAA ATGTTGAATT TGCCTCTGAG ATTTCAATTT AAACTTCATG TTGCTTTTGA
ATCAACTTTT GTCATTTTGT TTTAGAGAAA TGAAACTATG AATTCATTTC TG

[show][hide][copy]CDS

>Vigan.03G009200.01
ATGGCTGCTG TCGAAATTCC TACGTTGGTG CTTCCAAACT CTAGTACCCA ACAGAGGGTG CCAGTGGTCG GAATGGGTTC
TGCCCCAGAT TTCACCTGCA AGAAAGACAC AAAGGAAGCA ATCATCGAGG CCATAAAGCA GGGTTACAGA CACTTTGACA
CTGCTGCTGC TTATGGCTCT GAACAGGCTC TTGGAGAAGC TCTCAAAGAA GCAATTCAAC TTGGTCTTGT CTCTCGTCAA
GATCTCTTCG TCACTTCCAA GCTTTGGGTC ACTGAAAATC ATCCTCATCT CGTTGTTTCA GCCTTGCGCA AATCACTCAG
AACTCTTCAA CTGGAGTATC TCGATCTCTA TCTCATTCAC TGGCCCATCA GTTCTCAACC TGGAAAATTC TCATTTCCAA
TCGAGGTTTC AGATCTTTTG CCTTTTGATG TGAAGGGTGT GTGGGAAGCC ATGGAAGAGT GTCAAAAGCT TGGTCTCACA
CGAGCCATTG GTGTGAGCAA CTTTTCTGTG AAGAAACTTG AGAATTTACT GTCTGTTGCT ACCATCCGTC CTGTGGTGAA
TCAAGTGGAG ATGAATCTTG CATGGCAGCA GAAGAAGCTG AGAGAGTTCT GCAGTGAAAA TGGGATAATC ATAACTGCAT
TTTCTCCTCT GAGGAAAGGT GCAAGTAAGG GAGCAAATGA AGTGATGGAG AATGAAATGC TGAAAGAGAT TGCAGAGGCT
CATGGTAAGA CTATAGCTCA AGTTTCTCTG AGATGGTTGT ATGAACAAGG AGTCACCTTC GTGCCAAAGA GCTACGATAA
GGGAAGGATG AACCAAAACC TTCAGATATT TGATTGGAAG TTAACCAAAG ACGATCTTCA CAAAATTAGT GAAATATATC
AAAATCGTTT GATCAATGGA CCCACCAAAC CCCAACTCAA TGATCTTTGG GACGATGAAA TATAA

[show][hide][copy]PROTEIN

>Vigan.03G009200.01
MAAVEIPTLV LPNSSTQQRV PVVGMGSAPD FTCKKDTKEA IIEAIKQGYR HFDTAAAYGS EQALGEALKE AIQLGLVSRQ
DLFVTSKLWV TENHPHLVVS ALRKSLRTLQ LEYLDLYLIH WPISSQPGKF SFPIEVSDLL PFDVKGVWEA MEECQKLGLT
RAIGVSNFSV KKLENLLSVA TIRPVVNQVE MNLAWQQKKL REFCSENGII ITAFSPLRKG ASKGANEVME NEMLKEIAEA
HGKTIAQVSL RWLYEQGVTF VPKSYDKGRM NQNLQIFDWK LTKDDLHKIS EIYQNRLING PTKPQLNDLW DDEI*