GBrowse Details

Vigan.03G005700.01

Basic Information:
Name: Vigan.03G005700.01
Multiple alignment
Variant Information
Position: Chr03:471313..473097 (+ strand)
Length: 1785
Functional Information:
Description: Similar to uncharacterized protein. [C6TEX2, Glycine max]
GO: Biological Process: photosynthesis, light harvesting (GO:0009765)
Cellular Component: membrane (GO:0016020)
InterPro: Chlorophyll A-B binding protein, plant (IPR001344)
Chlorophyll A-B binding protein (IPR022796)
Chlorophyll a/b binding protein domain (IPR023329)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.44,6.94,369.00,3177.73,1.09,609.83,6.99,499.33
Arabidopsis thaliana homolog: AT1G61520.1
Automatic updates:
Name: NM_001289335 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chlorophyll a-b binding protein 3, chloroplastic-like (LOC100808379), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001360253 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PSI type III chlorophyll a/b-binding protein (LOC100784090), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:471313..471540 (+ strand)
Length: 228
Type: five_prime_UTR
Position: Chr03:471541..471855 (+ strand)
Length: 315
Type: CDS
Position: Chr03:471942..472003 (+ strand)
Length: 62
Type: CDS
Position: Chr03:472124..472739 (+ strand)
Length: 616
Type: CDS
Position: Chr03:472740..473097 (+ strand)
Length: 358
Type: three_prime_UTR

>Vigan.03G005700.01 class=Sequence position=Chr03:471313..473097 (+ strand)
GTGACATGTT GCCTATGTTA AAATTATCAG ATGGAGGAAA AGATTCATCC TTGAAAATTT GGGAAGACAT TATCCAGAGG
AAATAGGAAA CAGGAAATAA TATCCAACCC TTATCCGATT CATCAGATTA CGTGTACACA CTTGGTTGGA GAACAAGATC
ATAATCTCAT CTTGAGTGCA TTGCATTGCG CCATGCAATA TCCACCATGA GTTGGATACT GGTCGTACAT GCGGGCCAAT
GTAGTAGTGG CTCACCTTCC TCCATATCTT CCACCCCCTT GGCTTTTTAG CGGTTGCAAA CACATATCAT TCATCCCTAA
CCTTCACTTC TATTACTCTC TTTTGCTGCA CCAGTTGCAA ACGCATCAAA GGAGGAGTAG TATAACCACC ATGCCTGCAC
AAGCTCTGCT ATCATCTTCA TCTCTTGTCC TCTCAGCGGA GGCTGCCAGA CAGACTCTCG GACCACGATC ACACCAATCT
CCCTTTGCCT TCTCCCGAAA AGCCTCCTTC ATTGTTAAGG CAGCATCTAC TCCCCCTGTC AAGGTTTCTT CCTCTCTCAC
TCCTTTTTTC TTCTTCTCTC TCTTCATCTG CATCTCTACT TACAAAAGTT TCTTCCTTTT CGTGTTCAGC AAGGAGCAGA
CAGACCTTTA TGGTTTGCAT CAAAGCAAAG TCTTTCTTAC TTGGATGGCA GGTAAAAAAA TCCTACTTTT CAAACAACTA
TTGATAAAGT TTTGCAATTT AGTGAAATAA TAGCAGATAG TATAAGTGAA GGTGTTGGAA TTGACTTTGT TTGGCATGGT
TTGGTTTGCA GCCTTCCCGG TGACTATGGA TTTGACCCTC TTGGACTTTC GGACCCTGAA GGAACAGGAG GGTTCATCGA
GCCCAAATGG CTAGCGTATG GTGAGATCAT CAATGGTCGT TATGCAATGT TGGGTGCAGT TGGAGCCATA GCACCTGAAA
TTCTCGGCAA GGCTGGTCTG ATCCCTCAGG AGACAGCACT GCCATGGTTC AGAACCGGTG TGATCCCACC TGCAGGAACA
TACAACTACT GGGCAGACTC GTACACGCTC TTTGTGTTTG AGTTGGCACT GATGGGATTT GCAGAGCACA GAAGATTCCA
AGACTGGGCG AAACCAGGGT CTATGGGGAA ACAATACTTC TTAGGACTAG AAAAAGGTCT TGGAGGTTCC GGTGATCCAG
CATACCCCGG AGGACCTTTG TTTAACCCTC TTGGTTTTGG AAAGGATGAG AAGTCGTTGA AGGATTTGAA GCTGAAGGAA
GTCAAGAATG GAAGGTTGGC TATGTTGGCA ATCTTGGGTT ACTTTGTTCA AGCTCTTGTG ACAGGTGTTG GTCCATACCA
GAACCTCCTA GATCATCTTG CTGACCCTGT TCACAACAAC ATCTTGACCA GTCTCAAGTT CCACTGAATG TATCATATGT
TGTTACATAT TCTTTACTCT CTCGGTTGTT GTTGTTGTAC GCAGTTACCA AAACTCAATC ACTTTTCTAT ATCCTTTCTT
TGCTCTTTGG TACTGTATCA TCATCATCAT CATCTGGACA TTTTGTTCCT TGGTGTGCCA CTCTAAGAAA TGACATCTAA
AACAATTAGA AACATTTCAC AGCTTCTGAT ATCTCTTTTC TGGCTAGATC AACCTTTCCC TCTCTTTTTT ATCAACATTC
ATACAACGGT TGCACGGACG GTCTCATTCT TTATTCATTC AAACAAATAC TGATTAAGAA AAATTAAATG GATACTTCTA
TGTTTCTTCA AGATTTCTAC TGCTT

>Vigan.03G005700.01
GTGACATGTT GCCTATGTTA AAATTATCAG ATGGAGGAAA AGATTCATCC TTGAAAATTT GGGAAGACAT TATCCAGAGG
AAATAGGAAA CAGGAAATAA TATCCAACCC TTATCCGATT CATCAGATTA CGTGTACACA CTTGGTTGGA GAACAAGATC
ATAATCTCAT CTTGAGTGCA TTGCATTGCG CCATGCAATA TCCACCATGA GTTGGATACT GGTCGTACAT GCGGGCCAAT
GTAGTAGTGG CTCACCTTCC TCCATATCTT CCACCCCCTT GGCTTTTTAG CGGTTGCAAA CACATATCAT TCATCCCTAA
CCTTCACTTC TATTACTCTC TTTTGCTGCA CCAGTTGCAA ACGCATCAAA GGAGGAGTAG TATAACCACC ATGCCTGCAC
AAGCTCTGCT ATCATCTTCA TCTCTTGTCC TCTCAGCGGA GGCTGCCAGA CAGACTCTCG GACCACGATC ACACCAATCT
CCCTTTGCCT TCTCCCGAAA AGCCTCCTTC ATTGTTAAGG CAGCATCTAC TCCCCCTGTC AAGCAAGGAG CAGACAGACC
TTTATGGTTT GCATCAAAGC AAAGTCTTTC TTACTTGGAT GGCAGCCTTC CCGGTGACTA TGGATTTGAC CCTCTTGGAC
TTTCGGACCC TGAAGGAACA GGAGGGTTCA TCGAGCCCAA ATGGCTAGCG TATGGTGAGA TCATCAATGG TCGTTATGCA
ATGTTGGGTG CAGTTGGAGC CATAGCACCT GAAATTCTCG GCAAGGCTGG TCTGATCCCT CAGGAGACAG CACTGCCATG
GTTCAGAACC GGTGTGATCC CACCTGCAGG AACATACAAC TACTGGGCAG ACTCGTACAC GCTCTTTGTG TTTGAGTTGG
CACTGATGGG ATTTGCAGAG CACAGAAGAT TCCAAGACTG GGCGAAACCA GGGTCTATGG GGAAACAATA CTTCTTAGGA
CTAGAAAAAG GTCTTGGAGG TTCCGGTGAT CCAGCATACC CCGGAGGACC TTTGTTTAAC CCTCTTGGTT TTGGAAAGGA
TGAGAAGTCG TTGAAGGATT TGAAGCTGAA GGAAGTCAAG AATGGAAGGT TGGCTATGTT GGCAATCTTG GGTTACTTTG
TTCAAGCTCT TGTGACAGGT GTTGGTCCAT ACCAGAACCT CCTAGATCAT CTTGCTGACC CTGTTCACAA CAACATCTTG
ACCAGTCTCA AGTTCCACTG AATGTATCAT ATGTTGTTAC ATATTCTTTA CTCTCTCGGT TGTTGTTGTT GTACGCAGTT
ACCAAAACTC AATCACTTTT CTATATCCTT TCTTTGCTCT TTGGTACTGT ATCATCATCA TCATCATCTG GACATTTTGT
TCCTTGGTGT GCCACTCTAA GAAATGACAT CTAAAACAAT TAGAAACATT TCACAGCTTC TGATATCTCT TTTCTGGCTA
GATCAACCTT TCCCTCTCTT TTTTATCAAC ATTCATACAA CGGTTGCACG GACGGTCTCA TTCTTTATTC ATTCAAACAA
ATACTGATTA AGAAAAATTA AATGGATACT TCTATGTTTC TTCAAGATTT CTACTGCTT

>Vigan.03G005700.01
ATGCGGGCCA ATGTAGTAGT GGCTCACCTT CCTCCATATC TTCCACCCCC TTGGCTTTTT AGCGGTTGCA AACACATATC
ATTCATCCCT AACCTTCACT TCTATTACTC TCTTTTGCTG CACCAGTTGC AAACGCATCA AAGGAGGAGT AGTATAACCA
CCATGCCTGC ACAAGCTCTG CTATCATCTT CATCTCTTGT CCTCTCAGCG GAGGCTGCCA GACAGACTCT CGGACCACGA
TCACACCAAT CTCCCTTTGC CTTCTCCCGA AAAGCCTCCT TCATTGTTAA GGCAGCATCT ACTCCCCCTG TCAAGCAAGG
AGCAGACAGA CCTTTATGGT TTGCATCAAA GCAAAGTCTT TCTTACTTGG ATGGCAGCCT TCCCGGTGAC TATGGATTTG
ACCCTCTTGG ACTTTCGGAC CCTGAAGGAA CAGGAGGGTT CATCGAGCCC AAATGGCTAG CGTATGGTGA GATCATCAAT
GGTCGTTATG CAATGTTGGG TGCAGTTGGA GCCATAGCAC CTGAAATTCT CGGCAAGGCT GGTCTGATCC CTCAGGAGAC
AGCACTGCCA TGGTTCAGAA CCGGTGTGAT CCCACCTGCA GGAACATACA ACTACTGGGC AGACTCGTAC ACGCTCTTTG
TGTTTGAGTT GGCACTGATG GGATTTGCAG AGCACAGAAG ATTCCAAGAC TGGGCGAAAC CAGGGTCTAT GGGGAAACAA
TACTTCTTAG GACTAGAAAA AGGTCTTGGA GGTTCCGGTG ATCCAGCATA CCCCGGAGGA CCTTTGTTTA ACCCTCTTGG
TTTTGGAAAG GATGAGAAGT CGTTGAAGGA TTTGAAGCTG AAGGAAGTCA AGAATGGAAG GTTGGCTATG TTGGCAATCT
TGGGTTACTT TGTTCAAGCT CTTGTGACAG GTGTTGGTCC ATACCAGAAC CTCCTAGATC ATCTTGCTGA CCCTGTTCAC
AACAACATCT TGACCAGTCT CAAGTTCCAC TGA

>Vigan.03G005700.01
MRANVVVAHL PPYLPPPWLF SGCKHISFIP NLHFYYSLLL HQLQTHQRRS SITTMPAQAL LSSSSLVLSA EAARQTLGPR
SHQSPFAFSR KASFIVKAAS TPPVKQGADR PLWFASKQSL SYLDGSLPGD YGFDPLGLSD PEGTGGFIEP KWLAYGEIIN
GRYAMLGAVG AIAPEILGKA GLIPQETALP WFRTGVIPPA GTYNYWADSY TLFVFELALM GFAEHRRFQD WAKPGSMGKQ
YFLGLEKGLG GSGDPAYPGG PLFNPLGFGK DEKSLKDLKL KEVKNGRLAM LAILGYFVQA LVTGVGPYQN LLDHLADPVH
NNILTSLKFH *