GBrowse Details

Vigan.02G338700.01

Basic Information:
Name: Vigan.02G338700.01
Multiple alignment
Variant Information
Position: Chr02:45209042..45210870 (- strand)
Length: 1829
Functional Information:
Description: Similar to At2g46890/F19D11.17. [Q8RY39, Arabidopsis thaliana]
GO: Biological Process: lipid metabolic process (GO:0006629)
Cellular Component: cytoplasm (GO:0005737)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors (GO:0016627)
InterPro: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (IPR001104)
Protein of unknown function DUF1295 (IPR010721)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.03,0.69,2.60,0.48,0.25,7.09,9.32,27.99
Automatic updates:
Name: NM_001252751 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100807179 (LOC100807179), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:45209042..45209334 (- strand)
Length: 293
Type: three_prime_UTR
Position: Chr02:45209335..45209814 (- strand)
Length: 480
Type: CDS
Position: Chr02:45209932..45210195 (- strand)
Length: 264
Type: CDS
Position: Chr02:45210298..45210534 (- strand)
Length: 237
Type: CDS
Position: Chr02:45210535..45210870 (- strand)
Length: 336
Type: five_prime_UTR

>Vigan.02G338700.01 class=Sequence position=Chr02:45209042..45210870 (- strand)
ATGAACTCGG ATATATCTGT ATCAGAGAAT GATTTATTCT CTCAGATTCA CTTTTCTGAA ATTTGATAAT AGTTCTAGAC
AACAGTAAGA CATAAAAGTC AAATGAAACG GGCGTGGATA TACAGACATT GGGATCATAG AATCCCCTAA TCATTGTGTG
GAACAACGGA TCAGGCTAAT TGATAACCTG GTGGCGTGCT GTGTGGGGAA CCACAAGTAG AAACATAAAG GGAATTGTGC
TGAATTTTGT TTGGAGCCTC TGCATGCCTT GCTTCCCTTC TATTTTCGAC AGCTATAAAA GTGGAAGCCA CAAAGACCGT
GACAACAAAT CACAACATGG CAACATATAG CAATCTGAAG AATGCTACTA TAGCATTCTT GGTCCCTCTG CCCTCCATCC
TAGTTTATCT CTCCTTCCAT TCTGCCATCA GTGGCTTTCC ACACTCTCCA TCTTCTCTGT CAACTCTTTG GACATGGTGT
TATCACCATC CTTTACTATT TGCCAATGTC CTTTTCTTCT TCAATGTCAA TCTGCTCTTC TGGCTCATCG GCCTAATCCA
ATCCAGCCAC TGGGTACACT TTCCACTTCA CTTCCCTCTT TTCTTCTCTT CACTTATGCA GTTTCGTTTC TGGTTTGATT
TTGAGCTTGA CACACACCTT TTGCTGTCGG TACAGATGAT CGACCCGTAT TGGACGGTGA TACCTGTGAT GCTAGTTCAT
TACTATTCGA CTCATCCTTT GGCTCAGTAT AACTGGTTGA GGTCGAGGAC GGTGATTCTG TTGACTTGGG TGTGGAGTAT
CAGGCTGATC CACAACTACT TCAGGCGAGA AAAATGGCAG TGGGGTGCCA GGGAGGATTG GCGTTTCACT GATTTGAGCC
ATCAGTATGG AAAGCATTGG TGGTGGGCTT CCTTCTTCGC CATCTACGTG CCTCAGCAGG TCACTCACCA TTTCTAGCTT
TCTGTGCTTT TACATTAAAG AAGCATGAAC CCTGTTTATA TAATATCTAT CTGCACCTTC CATTTAAATT TAAGTGTATC
GATTTCACCT TTTCAGGTGT TTCTGATTGG ACTATCACTT CCATTCTATG TTATCCACTC GGTCAACGAG CCTCTGAGCA
TGTGGGACTT TGTAGCCATA GTTTTGTGTA TATCTGGTGT TGTCATAGCA TACATTGCTG ATACTCAGCT TTACAACTTT
GTGAGTGGAA ACAAGGAGCT AAAAGAAGCA GGTAAGACAG AGGTTTCGAT TCTTGAGAAA GGGTTGTGGT ATTACTGTCG
GCATCCAAAC TACTTTGGAG AGCAGTTGTG GTGGTGGGGA GTGTTTGTGT TTGCATGGAA GCTGGGACAT GGATGGACCT
TCATAGGGGC TTTGGCCAAT AGCATGTGTT TGGGTTATGT GACAAAGCTT GTGGAGGAGC GAATCTTGAA ACAAGAGAGC
AGAGAAGAGG CCTATAGGCT TTATCAGAAG ACAACTTCCA CATGGGTGCC TTGGTTCAAG TTCTCTCCTT TGGAACTAAA
ATCTAAGGAT CTTTGATTGT GTTTCATTTT CATCATCACA TCAGTTCTAG TTCTAGCTGT AGTACTGATT CTACCACCAA
CTTCATCATC TTAATTTTCC CTACTTTCTT CATTATGTAA CGGAGCCAAC CCATGAGTTG GATCATGTCA TGTGTGTGTG
TGTGCTCTGC ACTTCCATCA TTTTTTGTAC CATATTTATC ACCGTTACTA GCTCAGAAGA ATCTCTGAAA TGGCTTCTGC
ATATACTCTC TGATCATTTT CGTGATAATG AAGTTTAAAA TTAGTAATGC AGACAAGTTT TTTGAAAAA

>Vigan.02G338700.01
ATGAACTCGG ATATATCTGT ATCAGAGAAT GATTTATTCT CTCAGATTCA CTTTTCTGAA ATTTGATAAT AGTTCTAGAC
AACAGTAAGA CATAAAAGTC AAATGAAACG GGCGTGGATA TACAGACATT GGGATCATAG AATCCCCTAA TCATTGTGTG
GAACAACGGA TCAGGCTAAT TGATAACCTG GTGGCGTGCT GTGTGGGGAA CCACAAGTAG AAACATAAAG GGAATTGTGC
TGAATTTTGT TTGGAGCCTC TGCATGCCTT GCTTCCCTTC TATTTTCGAC AGCTATAAAA GTGGAAGCCA CAAAGACCGT
GACAACAAAT CACAACATGG CAACATATAG CAATCTGAAG AATGCTACTA TAGCATTCTT GGTCCCTCTG CCCTCCATCC
TAGTTTATCT CTCCTTCCAT TCTGCCATCA GTGGCTTTCC ACACTCTCCA TCTTCTCTGT CAACTCTTTG GACATGGTGT
TATCACCATC CTTTACTATT TGCCAATGTC CTTTTCTTCT TCAATGTCAA TCTGCTCTTC TGGCTCATCG GCCTAATCCA
ATCCAGCCAC TGGATGATCG ACCCGTATTG GACGGTGATA CCTGTGATGC TAGTTCATTA CTATTCGACT CATCCTTTGG
CTCAGTATAA CTGGTTGAGG TCGAGGACGG TGATTCTGTT GACTTGGGTG TGGAGTATCA GGCTGATCCA CAACTACTTC
AGGCGAGAAA AATGGCAGTG GGGTGCCAGG GAGGATTGGC GTTTCACTGA TTTGAGCCAT CAGTATGGAA AGCATTGGTG
GTGGGCTTCC TTCTTCGCCA TCTACGTGCC TCAGCAGGTG TTTCTGATTG GACTATCACT TCCATTCTAT GTTATCCACT
CGGTCAACGA GCCTCTGAGC ATGTGGGACT TTGTAGCCAT AGTTTTGTGT ATATCTGGTG TTGTCATAGC ATACATTGCT
GATACTCAGC TTTACAACTT TGTGAGTGGA AACAAGGAGC TAAAAGAAGC AGGTAAGACA GAGGTTTCGA TTCTTGAGAA
AGGGTTGTGG TATTACTGTC GGCATCCAAA CTACTTTGGA GAGCAGTTGT GGTGGTGGGG AGTGTTTGTG TTTGCATGGA
AGCTGGGACA TGGATGGACC TTCATAGGGG CTTTGGCCAA TAGCATGTGT TTGGGTTATG TGACAAAGCT TGTGGAGGAG
CGAATCTTGA AACAAGAGAG CAGAGAAGAG GCCTATAGGC TTTATCAGAA GACAACTTCC ACATGGGTGC CTTGGTTCAA
GTTCTCTCCT TTGGAACTAA AATCTAAGGA TCTTTGATTG TGTTTCATTT TCATCATCAC ATCAGTTCTA GTTCTAGCTG
TAGTACTGAT TCTACCACCA ACTTCATCAT CTTAATTTTC CCTACTTTCT TCATTATGTA ACGGAGCCAA CCCATGAGTT
GGATCATGTC ATGTGTGTGT GTGTGCTCTG CACTTCCATC ATTTTTTGTA CCATATTTAT CACCGTTACT AGCTCAGAAG
AATCTCTGAA ATGGCTTCTG CATATACTCT CTGATCATTT TCGTGATAAT GAAGTTTAAA ATTAGTAATG CAGACAAGTT
TTTTGAAAAA 

>Vigan.02G338700.01
ATGGCAACAT ATAGCAATCT GAAGAATGCT ACTATAGCAT TCTTGGTCCC TCTGCCCTCC ATCCTAGTTT ATCTCTCCTT
CCATTCTGCC ATCAGTGGCT TTCCACACTC TCCATCTTCT CTGTCAACTC TTTGGACATG GTGTTATCAC CATCCTTTAC
TATTTGCCAA TGTCCTTTTC TTCTTCAATG TCAATCTGCT CTTCTGGCTC ATCGGCCTAA TCCAATCCAG CCACTGGATG
ATCGACCCGT ATTGGACGGT GATACCTGTG ATGCTAGTTC ATTACTATTC GACTCATCCT TTGGCTCAGT ATAACTGGTT
GAGGTCGAGG ACGGTGATTC TGTTGACTTG GGTGTGGAGT ATCAGGCTGA TCCACAACTA CTTCAGGCGA GAAAAATGGC
AGTGGGGTGC CAGGGAGGAT TGGCGTTTCA CTGATTTGAG CCATCAGTAT GGAAAGCATT GGTGGTGGGC TTCCTTCTTC
GCCATCTACG TGCCTCAGCA GGTGTTTCTG ATTGGACTAT CACTTCCATT CTATGTTATC CACTCGGTCA ACGAGCCTCT
GAGCATGTGG GACTTTGTAG CCATAGTTTT GTGTATATCT GGTGTTGTCA TAGCATACAT TGCTGATACT CAGCTTTACA
ACTTTGTGAG TGGAAACAAG GAGCTAAAAG AAGCAGGTAA GACAGAGGTT TCGATTCTTG AGAAAGGGTT GTGGTATTAC
TGTCGGCATC CAAACTACTT TGGAGAGCAG TTGTGGTGGT GGGGAGTGTT TGTGTTTGCA TGGAAGCTGG GACATGGATG
GACCTTCATA GGGGCTTTGG CCAATAGCAT GTGTTTGGGT TATGTGACAA AGCTTGTGGA GGAGCGAATC TTGAAACAAG
AGAGCAGAGA AGAGGCCTAT AGGCTTTATC AGAAGACAAC TTCCACATGG GTGCCTTGGT TCAAGTTCTC TCCTTTGGAA
CTAAAATCTA AGGATCTTTG A

>Vigan.02G338700.01
MATYSNLKNA TIAFLVPLPS ILVYLSFHSA ISGFPHSPSS LSTLWTWCYH HPLLFANVLF FFNVNLLFWL IGLIQSSHWM
IDPYWTVIPV MLVHYYSTHP LAQYNWLRSR TVILLTWVWS IRLIHNYFRR EKWQWGARED WRFTDLSHQY GKHWWWASFF
AIYVPQQVFL IGLSLPFYVI HSVNEPLSMW DFVAIVLCIS GVVIAYIADT QLYNFVSGNK ELKEAGKTEV SILEKGLWYY
CRHPNYFGEQ LWWWGVFVFA WKLGHGWTFI GALANSMCLG YVTKLVEERI LKQESREEAY RLYQKTTSTW VPWFKFSPLE
LKSKDL*