GBrowse Details

Vigan.02G334700.01

Basic Information:
Name: Vigan.02G334700.01
Multiple alignment
Variant Information
Position: Chr02:44936848..44939357 (+ strand)
Length: 2510
Functional Information:
Description: Similar to DNA-directed RNA polymerase subunit. [V7B3G1, Phaseolus vulgaris]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, TFIIS-type (IPR001222)
DNA-directed RNA polymerase, M/15kDa subunit (IPR001529)
DNA-directed RNA polymerase, subunit C11/M/9 (IPR012164)
DNA-directed RNA polymerase M, 15kDa subunit, conserved site (IPR019761)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.00,8.28,5.95,4.75,11.08,6.88,10.36,5.72
Arabidopsis thaliana homolog: AT3G16980.1
Automatic updates:
Name: NM_001248874 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305979 (LOC100305979), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:44936848..44936961 (+ strand)
Length: 114
Type: five_prime_UTR
Position: Chr02:44936962..44936990 (+ strand)
Length: 29
Type: CDS
Position: Chr02:44937068..44937143 (+ strand)
Length: 76
Type: CDS
Position: Chr02:44937464..44937622 (+ strand)
Length: 159
Type: CDS
Position: Chr02:44938862..44938942 (+ strand)
Length: 81
Type: CDS
Position: Chr02:44938943..44939357 (+ strand)
Length: 415
Type: three_prime_UTR

>Vigan.02G334700.01 class=Sequence position=Chr02:44936848..44939357 (+ strand)
TTTGGATGCT ACATAACAGA GACAGAGGCG TGAGAGGGAA ATTAGAAAGA GCAAAGAAAA GGAGCGAAGA AGAGCATCGA
GTAGGATTCT TCATCCCTTC ACATCGTTGC CAAGATGAGT ACTATGAAAT TTTGCCGTGA ATGGTTTGTC CCCTCTTCAT
TTTCCTCTTC GATTTTCCCT CTTTTGAATT CTTTTTGTTC ATTCATTGCT TCTGGTTCAG TAACAACATT CTCTACCCTA
AAGAAGACAG AGATCAGAAG ATTCTTCTCT ACGCTTGCCG CAACTGCGAC CATCAGGTTC TTCTCCTTTT CTTTTACCCC
TTTACAGCTA ATTTTTGTTT TGAAGTGTGG AACTCTGACG GACTGAAAAT TCTCTTCATG TTTTTGCCAC GTCAAGTACC
CGTTTGCATT GGTTTATTTT GGGACCGAAA AAAAGTTTGA TTTTTTTAGT AGAAAATAGC GATTATTTTA TTGATTTAAT
CTCTACCCAA TCATGGGTCA AAATGTTGGT TGTCTTTGTT TTGAAGAAAA TGTTGAAAGG GGTTCTTTGC ATTTCTGATA
TGAGTAATTT TAATGGGACA TGTTTGTTTG ACTAGTTTTT TTTTTTTTTT GTTCAGGAGG TTGCGGATAA CTTCTGTGTA
TACAGGAATG AGATACATCA TTCTGTTGGA GAGCGCACTC AAGTGTTGCA GGATGTAGCT GCAGATCCAA CGCTTCCTCG
GACCAAGTCT GTTCGCTGCA CTCAGTGCAA TCATGGTGAA GCTGTCTTTT TCCAGGTAAA TTCCTGTTCT GTGTTTGAAA
CTGTGAAATT GTTTTGTTAT TTTTGCAGTT TGCTATCTTG GTATTAGAAT TAAGCAGAAG ATAGATTGTA AAATGGTCCT
TGCCAAGGTT AGGTCATATT GCAAGATTCT GATTTAGTTC CACATTGGAT GGGTATCCCC TTCTTCCTTG TGTGTGTGTA
CATGGAGCGA TGTGGAGGTA GAGCTGTGAA GATTTGAGGA TAAATATTCA TAAGTTTATT ATTTCTTGCA TATAGCACAA
TATTTCTGTT TTACACTATG CTGCTCTTTC TAGTCTTGAC ATATTGCACA AGGAGAGCAA CTAATAAAGA GATTTAAGCC
TTGACATTTA TCTAATGTGT GTAAGTCTGT TTAGGGCTGT GAAAGTATAT TGGCTATTGC ATAGATAGCA GCCATGAGAT
ATAGGTTATA AGTAGATTGT AAACCCTTTC TTGTGTTTAC GTTGATATAG TTTGATAACC TTCATTATTT GGAAGTTTAG
GCAGATTTAC TTTAGAATGA TTAAAGCATG AACAAGTTTG ACTTCTATTC AGCATGGCTT GTGATGCTGC CTTAGTCTCC
ATCATTGTAG TATTCATGGT TCTGGGCAGA TTGTTGCAGT GAATAAATTT CGACTTTTCT TTTTCTGGGA AAATATCGAT
GAATGTAGTA CTGGGTATTT TTTTTTTGTC CCTGCAGTCA TTTGTCAAAT AAGAAACTAA GGGGATTTGT TTTCCTTTGC
TAAATAGTCA GTGTTTTTGT GATATATAAC ACTTTATGTA AGGAGTTGCT TACTTGGTTG ACTTGAAAAT GCTAGAAGAT
CTTCGTGTTT CAAATGTTTC TTTTTCAAGT ACTGATCATG TATGCTACAG ATCTTGGTAA GATTTTATTC ATGGTTTGGA
AAGTAGGTCT TCCCATTCTA TTTAATTCTT AATTATTTAA ATTCTAAACT GATTTCTGCA CTGAACACTA GACTCTAGTT
TGGCACACCT TGATGAGGAA CCTACTATCG GCTGCAAATG TCTATGCTAA TACACCACCC TTTAAACTCT AAAATCATGT
CTATCTGTCA CTATAGATGA TGCAGTTATA TTGAATAGAA AAAGGCAAAA TTCAATATAA TCTTTTGAAT TTAAAATGAT
GTACATTGTA GCCCTTTTGA ATGCTTTTTT GGCAAAATTT TCAAACTGCA TTTTAGTTAC TCATGTGGCA TCGCAATTTT
TTTTATGTAT TCAGGCAACA GCAAGAGGGG AAGAAGGAAT GACACTTTTT TTCGTTTGCT GCAATCCAAA CTGTGGATAC
CGATGGAGAG ACTGAAATTT GAGCTTCTTC AGATGAAGGT TCAATACTGG GGAAATCCAA TATTTGTTTT AGCCTATTTT
GAAAAGTTAA TCTTTTTATT TTTCTTGTCA AGTTTCTGAA AAGCTTTTGG AAAACAGAAA CTACTTCTCA AATTTTAAGC
TAAAGCAAAA AGGGCTATGT TGTCTATAGT ATGACAGAGG AGAGAATGCA TTTCTGAAAA GCTTTTTATT TTTGTTTTAA
CTGCAGTTTC TGATCTAATG ATTAAAATAG TTAATGTAAA ACTGTTGTTG GTCAGTGCTG ATAACTTGTA TGGATAGGCC
TAAAACAAAG TGTCATGCTA TTTTAAATTT TATTCAACAT TTTCTAAATC TAAAATGAAG TGTCACTTCC TCGTACCAGA
ATTTTGTATG AAAAATACTT CACATATATT 

>Vigan.02G334700.01
TTTGGATGCT ACATAACAGA GACAGAGGCG TGAGAGGGAA ATTAGAAAGA GCAAAGAAAA GGAGCGAAGA AGAGCATCGA
GTAGGATTCT TCATCCCTTC ACATCGTTGC CAAGATGAGT ACTATGAAAT TTTGCCGTGA ATGTAACAAC ATTCTCTACC
CTAAAGAAGA CAGAGATCAG AAGATTCTTC TCTACGCTTG CCGCAACTGC GACCATCAGG AGGTTGCGGA TAACTTCTGT
GTATACAGGA ATGAGATACA TCATTCTGTT GGAGAGCGCA CTCAAGTGTT GCAGGATGTA GCTGCAGATC CAACGCTTCC
TCGGACCAAG TCTGTTCGCT GCACTCAGTG CAATCATGGT GAAGCTGTCT TTTTCCAGGC AACAGCAAGA GGGGAAGAAG
GAATGACACT TTTTTTCGTT TGCTGCAATC CAAACTGTGG ATACCGATGG AGAGACTGAA ATTTGAGCTT CTTCAGATGA
AGGTTCAATA CTGGGGAAAT CCAATATTTG TTTTAGCCTA TTTTGAAAAG TTAATCTTTT TATTTTTCTT GTCAAGTTTC
TGAAAAGCTT TTGGAAAACA GAAACTACTT CTCAAATTTT AAGCTAAAGC AAAAAGGGCT ATGTTGTCTA TAGTATGACA
GAGGAGAGAA TGCATTTCTG AAAAGCTTTT TATTTTTGTT TTAACTGCAG TTTCTGATCT AATGATTAAA ATAGTTAATG
TAAAACTGTT GTTGGTCAGT GCTGATAACT TGTATGGATA GGCCTAAAAC AAAGTGTCAT GCTATTTTAA ATTTTATTCA
ACATTTTCTA AATCTAAAAT GAAGTGTCAC TTCCTCGTAC CAGAATTTTG TATGAAAAAT ACTTCACATA TATT

>Vigan.02G334700.01
ATGAGTACTA TGAAATTTTG CCGTGAATGT AACAACATTC TCTACCCTAA AGAAGACAGA GATCAGAAGA TTCTTCTCTA
CGCTTGCCGC AACTGCGACC ATCAGGAGGT TGCGGATAAC TTCTGTGTAT ACAGGAATGA GATACATCAT TCTGTTGGAG
AGCGCACTCA AGTGTTGCAG GATGTAGCTG CAGATCCAAC GCTTCCTCGG ACCAAGTCTG TTCGCTGCAC TCAGTGCAAT
CATGGTGAAG CTGTCTTTTT CCAGGCAACA GCAAGAGGGG AAGAAGGAAT GACACTTTTT TTCGTTTGCT GCAATCCAAA
CTGTGGATAC CGATGGAGAG ACTGA

>Vigan.02G334700.01
MSTMKFCREC NNILYPKEDR DQKILLYACR NCDHQEVADN FCVYRNEIHH SVGERTQVLQ DVAADPTLPR TKSVRCTQCN
HGEAVFFQAT ARGEEGMTLF FVCCNPNCGY RWRD*