GBrowse Details

Vigan.02G328000.01

Basic Information:
Name: Vigan.02G328000.01
Multiple alignment
Variant Information
Position: Chr02:44428039..44432500 (+ strand)
Length: 4462
Functional Information:
Description: Similar to Uncharacterized protein. [I1MGN0, Glycine max]
GO: Biological Process: microtubule-based process (GO:0007017)
Cellular Component: microtubule associated complex (GO:0005875)
InterPro: Dynein light chain, type 1/2 (IPR001372)
Dynein light chain, type 1/2, conserved site (IPR019763)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.79,5.79,12.54,22.08,11.02,21.98,6.81,17.84
Arabidopsis thaliana homolog: AT4G15930.1
Automatic updates:
Name: NM_001251366 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527842 (LOC100527842), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251641 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305908 (LOC100305908), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:44428039..44428462 (+ strand)
Length: 424
Type: five_prime_UTR
Position: Chr02:44428463..44428630 (+ strand)
Length: 168
Type: CDS
Position: Chr02:44428760..44428865 (+ strand)
Length: 106
Type: CDS
Position: Chr02:44432272..44432354 (+ strand)
Length: 83
Type: CDS
Position: Chr02:44432355..44432500 (+ strand)
Length: 146
Type: three_prime_UTR

>Vigan.02G328000.01 class=Sequence position=Chr02:44428039..44432500 (+ strand)
CAGCCATTGG TCCACCTAAT TTCTGTCGTG CAAGGATTCG CACCAGTAGA CCACACCAAA TATGCTCCAC AATCCTTTTA
CATATTCTTC AAAACACCAC TTTATTTTCG TCAAAATAAA ATTCTTAAAT TCAAAAGACA CCAATTTTAT TTATTTGTTT
ATTTATTCCA TAATAGAAAC AACATATTCT CCAAAACAGT GCTTATGGTG GGCCTTTTGC TGAACTCGGA AGCATTCTCT
GGTGTGTGTG GTGTGGTGTT GCTGTTTCTA CACTTACCAC TGCAACTCTC TTCTTTCTTC TGCATTTCTC AGCTTAGCCC
CCCCACGTCG CTTTCACTTC CCGGAAACCC AACTTCATCA TCAAAATTTC ATATCACACA CAATAGATAG ATAGAGTGAG
AGAGAGAAAT TGCAAAAAAA GAAAATGAGT GAAGAAGTAA AAAAGAACTT CGCCGGACCT CCAACGGCGA GGCTCAACGC
CGATGACCGG AAACCGTTAC CGGCACCGGC CGTTCCCCCG AAGAAGGTCA TCATCAAGAG CGCCGACATG ATCCCCGACA
TGCAGAAGGA GGCCGTTGAT ATCGCCGTCG CCGTTAGTTT TTACGACTTT CCTCTCTTCC TTTTCTTTGT TGCATGGTCC
ACCCTTCTGG ATTCTGTTTG TGGGTTTGTT TATGCTTGCT GTGTTGTGTC GTAAAGCCCT GGCTTTTTGC GGATTAATCA
GGCCTTTGAG AAGTACAATG TGGAGAAAGA TGTTGCGGAG CAGATAAAGA AGGAGTTCGA TAAGAGGCAT GGCCCCACTT
GGCATTGCAT CGTTGGTCGT AATTTTGGTA ATTCATTTTG TACCTTTTTA TTATTATTAC TTGTTATAAA TGATTTTGGT
ACTTGGGTAT ACTCGGATTC GTGGTTTATG TGACTCTTCT CTGGTGGAAA TTGAGTAGAT CTAAGGTTAT GTAAGTTGGT
CCTTGTGTGT TTGCTATGGT AGGAATTTAG AACTGATGCT GAAACCTTGG TTTGTTGTTG TTGTGGCATA TGGATGATTC
TCTGATCGTG GAATAAGATT TAAAGGCTTC TTGCTTTTTT ATATTCTCCA GCAGAAAATT GTGAGCTGAA TGGTATGTTT
AGTTTAGTTT AGTTGGTGTG ATTTGCGTTG TGTTGATGAG TCACAATTAC TTGTGTACTG GGGACCCGTG GTGTGTGGTG
ACAGACATTT TTTTCCCCTG TGCGTTGCTG GGGACAAATG CTCCCTGATA TTTCATGTTA GTGTCGTGAA CTTGATTCAT
GTTGGGCCTG TCATGTTAGA TGAAATGTTC TTCACTGATG CTCTGTATTC TTACCGAGGG AAAATGTACG GTCTAACTGA
TAATGAGCTA AGGAAAATTG AGGGTCCTAC AATTTTCAAG CTATATTTAG TTGGAGATTA GGAATTCAGG ATTGATTAAA
TCATCACTGG ATGAGTTGTT TTGCTGCGAA TCACATTGCT GGGCTATTAC TGTTATATCT TATTCCCCTC ATTATCTGTC
TGTCTTTCAT TTTCTATGGA TATCTTAATG TCAACACTCC ATTCTGCAAG CCTGCTGCTT GTTAACAAGA ACCTTTTGAA
GATCGAAATA GTAGTTACAA TTGATGGTTT CTGAGTCTTA AATATCTGTC GAGTTCAGTG CTATTAATCT TTCAAGTATC
GTTCTGTCCA TAATCTGAGG TTTTTGCTTA AATATTTATG TTGTGTGATT GCACATATTA GTATTTTTAT TCAAGTTCAT
GTTAGTGAAA CTATTGTATC TCTTCGTAAT CTGGTAAAGT AGCTAATATA TGAGCATGAT AAATCTTAAG GTTCTAAGTA
AGTCTATGAA TTTTTAGATG AGTCACTAGT TGATATTAAT TTTAAGCAGA ATGAAGGGCT CTTTCTGTCA CGGATTATCT
TTTCCATTTG TTTTAATCTT CCGTATCAAT TTCTGGTACA TGTGTTGAGT AGAATTTTAA AGTTTTCGTC TTTTTATTTA
TTTGATTAGA TAGATTTTGT AATGTTCTAT GCTTGTTGAA TTTTGCGATG CGCTTGTAGT CATTGCGCAA TAGGGGTACT
AGCTCAATAT TTTAAATTTG GGTGTGATGT TGATGTCAGA GGTCAGCTAT TAGGATTTTA TGAGTAGGAG TTTAGTTTTG
AATTTCTTTT ACAACAAAAC CCATTTCCTG CTGGGTTGGG TTGGCTTTAT TGATCAAATG ATGTCATTTT ATCTTGTCAA
AAACAAACAT TTTGGAGATA AGGTTGTTCA TAAAATGATA TAATCTATTG GAAATTTGCA ATTGCTAAAA CTAAACTGAC
AAACCAACTA CCAAAAATAC CGAAAAATCA ATCTACCTTC TTTCCCTTAA CAGGCACTGC CTATACCTGT TCTCTGATTC
ATCCATTCTT GGTGTTATCT GTTTTTGTAT GACTATGCTC ATCTATCTAT GACAAAATTA TCATCTCTAT AATTCTTAGC
TTATGTTCAT GGTATCTCAT TGTCCAACAT TAGTTGCCGT AGAGCATTAT CTGTTGATCT TACTACTCGA TGGTGAAATT
TTCATCCAAT CTTGAGTTAC TACTTTAAAC TGCTAAGAGC ACCTGATTTA TTCCTCCATT TTATTCATAT ATCTTGAATC
TATGATTTAT ATCCTCCTCT ATCACTTCAT TAATCGCCAC TCTGCATGGT AGATCCAAGT AACTCAAACT GTGTTGTAGG
GATTATGGAA TTGTAGCCAT ATTGTGAATT ATTTATAAGT AAAACCTTGA ATTAACACGA TCATATTTTC TGTCCTTTTA
ATACAAGTTC AACAAGTTCT TTGTTTTCCA TTTACATTTG ACTTCATAAC ATAACTCCCT TGTTATCCAA ATGTAGGATT
AGCTATGTAA TGATTTGCAT TACAGCACAA CATAGGCAGA ATTAATTCTG AATTTTTAAA TTTTTCAGTA AGATGGTCTC
AAAATGTGGT TCTTCCATCA TCATTTTAAA GTAGTTTATT GTTAAGTATT ACAATTTTAA TCGAGAACAT TTGTTTCATT
GCATGGGAGT GTCAAAGTGT TGAACCATAT ATAAACATTC CCGACCCCTG TATTCAGTTA ACAAATCCTT TCACAAATCA
AATTTCAATC AAGCTTAAAT TGCTACTCGT GCTGATGCAT GATTAAACAT AATCCAGGCC ATGAGCATAA TAAAAGAAGA
GTTATACTCA TACCATTAGC AAAAAGTTGT CTACAATTCT TCCTCCATAA CTTGTTCACT CTCTCTGCAT GATATAGTTA
ACTTATACCA ACTTCTCTGT CTTATCTTCA CATCACGTGA TTATTAAAAA GAACTGTACG GATTTTTTGT GTGAAAATAA
GTTCTTAAAG AAGAATCAGT TAGTTAGATT TTGACTTTTC AAACTGAACA ATGTAACATT CTTGCACACG GAAACATTAG
ACACCAGACA CTCATAGAAG GAAGCACTAA CATTCAGAGT TGTAGCTATA CCTGTGTTGT TGACACCTAA TAAACACTTT
GGCTTCTCCT AGTTTCGTTT TGCATTCTTT AAAAAAAATT ATACAAATAT TGATGGGAAT AGTGCAATAT ATTTGTTATT
TTTAGGCCAA TATGGATGGG AATACTGTTA TTAGATTAGT GATAGAATTT TACAGTGATC ATGTTAACTT TTAGAACATT
GATTTACTAT TTTGATTTGA AAATTGTGTT TTTATGTTAA TTTTTATACA ATTTTTTTCA TATCTGGTTT TATAAGTTTT
AAATGTTATG TCTGGTATCA TATCCATTAT CTGTGTTGTG ACTACTGGCA ACCATGCCTT TTGATAAATG TTTTAAGGTT
TTAACCCTAG AATGGTGTTA CATTATGGTA AATAATGTGT GCATAAACAA TGTAGTTTGG TTGGATAGAG TTTTTCTTAT
GAAGAATCTT GAGAGCTCCT TCCATTTTAA GGCCTCAAAG ACAAAACCAC AATCATATGT ATTCATGACT CTAAATACTT
ATCCCTCAAA AGAAAGGAAT ATCATTGGCT CAAGCTTATT AATATTAGGA TCCTTGTTCA CATAAATGCA TTCCCTTTTA
ATAATCATGT TATGCCATTG AACACTATTC TTTTTCAATG AAATTCAGAT TAATGCAAAA TGAAGACAGT TTCTTGTTCT
TTCTTAGCTT GGTTGTACTT TTTGTTACAG TTACTATTAA AGTGCATTCA TGGACTTGTC TTCCTTTTTG CAGGCTCATA
TGTGACTCAT GAAACAAACC ACTTTGTTTA TTTCTATTTG GATCAGAAAG CGGTTTTACT CTTCAAATCT GGCTAGCTTT
ATTGTGGTAG CAAAGATGTT GAGAAATGGG AATTATATTG TGATTGTACT GCTGCATGCA GTCCTCCTTG TATTAAGTCC
ACTGACATGC AAAATCTTTG TTGAACATTC TTGTTCTTGT ATTTTTGATG TCATGTAAAC CA

>Vigan.02G328000.01
CAGCCATTGG TCCACCTAAT TTCTGTCGTG CAAGGATTCG CACCAGTAGA CCACACCAAA TATGCTCCAC AATCCTTTTA
CATATTCTTC AAAACACCAC TTTATTTTCG TCAAAATAAA ATTCTTAAAT TCAAAAGACA CCAATTTTAT TTATTTGTTT
ATTTATTCCA TAATAGAAAC AACATATTCT CCAAAACAGT GCTTATGGTG GGCCTTTTGC TGAACTCGGA AGCATTCTCT
GGTGTGTGTG GTGTGGTGTT GCTGTTTCTA CACTTACCAC TGCAACTCTC TTCTTTCTTC TGCATTTCTC AGCTTAGCCC
CCCCACGTCG CTTTCACTTC CCGGAAACCC AACTTCATCA TCAAAATTTC ATATCACACA CAATAGATAG ATAGAGTGAG
AGAGAGAAAT TGCAAAAAAA GAAAATGAGT GAAGAAGTAA AAAAGAACTT CGCCGGACCT CCAACGGCGA GGCTCAACGC
CGATGACCGG AAACCGTTAC CGGCACCGGC CGTTCCCCCG AAGAAGGTCA TCATCAAGAG CGCCGACATG ATCCCCGACA
TGCAGAAGGA GGCCGTTGAT ATCGCCGTCG CCGCCTTTGA GAAGTACAAT GTGGAGAAAG ATGTTGCGGA GCAGATAAAG
AAGGAGTTCG ATAAGAGGCA TGGCCCCACT TGGCATTGCA TCGTTGGTCG TAATTTTGGC TCATATGTGA CTCATGAAAC
AAACCACTTT GTTTATTTCT ATTTGGATCA GAAAGCGGTT TTACTCTTCA AATCTGGCTA GCTTTATTGT GGTAGCAAAG
ATGTTGAGAA ATGGGAATTA TATTGTGATT GTACTGCTGC ATGCAGTCCT CCTTGTATTA AGTCCACTGA CATGCAAAAT
CTTTGTTGAA CATTCTTGTT CTTGTATTTT TGATGTCATG TAAACCA

>Vigan.02G328000.01
ATGAGTGAAG AAGTAAAAAA GAACTTCGCC GGACCTCCAA CGGCGAGGCT CAACGCCGAT GACCGGAAAC CGTTACCGGC
ACCGGCCGTT CCCCCGAAGA AGGTCATCAT CAAGAGCGCC GACATGATCC CCGACATGCA GAAGGAGGCC GTTGATATCG
CCGTCGCCGC CTTTGAGAAG TACAATGTGG AGAAAGATGT TGCGGAGCAG ATAAAGAAGG AGTTCGATAA GAGGCATGGC
CCCACTTGGC ATTGCATCGT TGGTCGTAAT TTTGGCTCAT ATGTGACTCA TGAAACAAAC CACTTTGTTT ATTTCTATTT
GGATCAGAAA GCGGTTTTAC TCTTCAAATC TGGCTAG

>Vigan.02G328000.01
MSEEVKKNFA GPPTARLNAD DRKPLPAPAV PPKKVIIKSA DMIPDMQKEA VDIAVAAFEK YNVEKDVAEQ IKKEFDKRHG
PTWHCIVGRN FGSYVTHETN HFVYFYLDQK AVLLFKSG*