GBrowse Details

Vigan.02G324900.01

Basic Information:
Name: Vigan.02G324900.01
Multiple alignment
Variant Information
Position: Chr02:44177716..44181925 (+ strand)
Length: 4210
Functional Information:
Description: Similar to Expressed protein. [Q2QP64, Oryza sativa subsp. japonica]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:8.00,16.53,3.90,3.14,4.09,2.79,2.40,3.28
Arabidopsis thaliana homolog: AT3G21400.1
Automatic updates:
Name: NM_001250626 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527797 (LOC100527797), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:44177716..44177801 (+ strand)
Length: 86
Type: five_prime_UTR
Position: Chr02:44177802..44177973 (+ strand)
Length: 172
Type: CDS
Position: Chr02:44178968..44179092 (+ strand)
Length: 125
Type: CDS
Position: Chr02:44179730..44180020 (+ strand)
Length: 291
Type: CDS
Position: Chr02:44180021..44181925 (+ strand)
Length: 1905
Type: three_prime_UTR

>Vigan.02G324900.01 class=Sequence position=Chr02:44177716..44181925 (+ strand)
CCAAAACAAG CCACGAAAAC ATCTTCAATA TTAGGCTTAC ACTACAAGAG ACATCACAAG GCCGCGTTTG GCGTCAAAAC
ACAACGATGG GTCAGGCATT TCGTCGAGCA TCTGGAAGAA TCCGGGCAGC ATCCGAGGCT GACACCTCAT CTTTCTCCAA
GCCAAAGAAC GCCGTTGATC GCCGACCGCC GCCCACGGTT GCCACCGACA AGGCGGCGCA GATCTCGAAA GCCGCCGAAC
AAGACGTACT TCAGGCCGGT AATTATGTCT CTCTCTTCTC GTAGGTCCAA AGCTTTTGAT TGGGAAATTA GAGCTAAAGG
ATTACGAAAA AATTGTTCCT TTAACATGAT TTCGCTCTGG GAAAATAAAA ATGGTTAGAA GGTGCCTTGG AAATTAAGGT
AGCTAATGTG GGTTATCCCG AGACAGTATT CTACTGTGTT GTAATGTTCT AGAACAAGGC TAAGACTGTG GGGGTTTGTG
GATGTTACTT TTCAGTTTAA AGTATTCCTT TGTAGTTTTT TTGCATCCAC ATGGGTTGGG TCATCGGTGT GCAAGTTTAG
TCCAGATGGA AATGGTGTAA TGAAAAATTG TGTTTGTGTG TGATGGGGGG AGTTTAGGCA TAGCTTGACA GAATAAATGG
TTGACGGTAA GATTTAGGAA AGAAGTTTAA CTGGATGTAG ATTTTTTATT GTTCACCCAT TTCTATCCCT CTATCTACCA
ATAACTAGTG AAACATCCAA GGGGTCACTT TGTTTCAGAA AATGTTCTGT TTTCACTTTT AATTACAAAT TGTGATTTTA
TTTTTAGTTG GGTTCTAGTA TTTAAAAATT TAGTAACAAA TTGTGGAAAT GGAAAATGAA TTCAAAACAT TAGTGCAAGT
TGATTTCTTT TCAAACTGGT TACGAAATCA AAACAATGTT ACATTATTGT GATTAAAAGT GATGGCAGAA AATGAAATTA
AAATACATTT TCTCAAACCA AACGACCCAG GTTTTCCATT CCACTCCATT TCCATTCTGT ATTTTTGTCC TTGCCGCTGC
TGATACCATT AGATTTTTTG TGGTTTTACT TCTTGTAGCA CTTATTTATC CATAAAAAAA TAAAAAGAAT TTGCTTCATG
TTAATTTGTG TCATTTTGAA ATGTTGCATA CATAGACATT GCTTATAATT TAGGTGTTCT TTGTGAAGTT CTATAATGCT
ACCGTGCTAT TTCATTGTGG TTGATTTCAC TGTTATTTGG TCTTGGCTTA AGATGATCGT TCTAGAGTTA ATATGGACAA
CGTCCTGGAA GAAAGAGATC CCAAATTTGA TGCTATGCTT GGTCAAATGG TTGGTAGAAT TAAATCAAAG CCTGGGGGGA
AACCTGAGAT GGGTGAGGTA AGTTTATATC AAATTGTTTT TACTCTTTCG GTAGAATTGA AGTTGATGCA GAAGTGTCAT
TACGGTGTGT GTATTAATGG ATAACTCCAA CATTTCAAAT TGTTTTATTC TTCACTCTTT TCCTATGAAA TTCTTTTAAT
GTCGGATGTT GAGTATTATT AAAGTTTATC ACTGTATCCA AAGTACAAAA ATGGTACTAT TGGCATTGAA CATCAAGTAA
ACCCTGTTTT TCTATATTGG CGTGTTTATC TGCGATCAAA TAAAAGGAAA TCTCCCATTA TGATCCTACC TTTGACTGTA
TTTTGTATGC CAATATTTGC ATAAAATACT GTCATGCATA CCTTTTCCAT TACCAATCAA TGCCGAGTAT GGTTTCTGTC
ATTTGTTACT CATGGTATGA GCAGAGTGCC AAGTTGAACT TGACAAATTT GGTTAACTTT TGGAATGTGT TTGGATGAAC
TTATTTTAGA GAATTAATAA CCTTTTTTAA TATCTTCTTA CGAGACATTC AAAAGAATTA TTTCTCAAAA AGAATGTTAC
AAATGCAGTT TCAATGGTCA GAGCTTTACT TTTGACTTTT TAGTGCTTAT TTACCGAGAC AAACTCACCT TACGTCTAGA
CAATATTGTT ATAGGCCTTT GTGGTTGAGA AGTACAACAG GCCAATGCCC AAATTGCGAA ACACAAAACC AGATTCTGGG
CGCTACGAGG AAAGGCAGGT TCCTGCTGGC ACTTTGAATA TTGCTCAGTT GCGCCATATC ATACTTTTAC ACGAAGGTAA
GGCTGATGAT TACAATGGAC GTATGAATGC TCAACAGATT GCTGAAAAAT TTCAAGTGGA TCTTGTTCAG ATTCAGAGGA
TCTTGCAATT CTTATCACAA CCTCCAGAAG GTAGCAGTAA AGACAAGAAC GAAGCACCAA GATAATAGCT TAACTGACAT
TACTCACTGG TTCTTTCTTG TGTTAAAATG GCTGTTCTAA ATGGATTTCA AGTGCGGACA AAAGTCTTGG GCATTAAAAC
ATGTCCGAAA GAAAGGACAA TGCCAAAAGG CCATAACATG AGGTCTTCAT TTAACTTGTA ATAGACTATA TTATCAGGTG
CTTGTGCAGC CCCTATTCAT AGACTCGAAT GACATCGTGA TATCAACAAT TGCATTTGTA CTTCTGACGA GAATTAACCC
TGGAGAGGGT GAGTTGCAAT AAGTGTTTTG AAACCCTACA GCTGAGATAT TGTTTGTTGT TTTTGCATTA CTTCACGACA
GTTAATAAAA CTGAGCAATT TCAGTTTTGT TCTTGCAAGA TGCATATATT TGTAAACTCT GATATTTAGA TGTACTTGCA
CTGTTAGACT TATTCCATGC AGAGAGATTC GTGTCCCTGC GTCATTAGCC TCGAATTTAA TCACCTCGAT CCTAGTCCCT
GAGCATAGTT AATTTGGATT GGTTGCAAAA CCAGTGCATA TAAAACCCTC AAATTGTGGA AGATGAAGTC CGAATGAAGA
CGGATTTAGC TGTTGGTGGG ATTATTCTTG TTAAGGTGAT TTTTACTTCC AAATTTATCC TAAATGGTTC AAATGAAGCG
CACCATTTAG AAAAAGGACA ATTGATGTCA CTCTGCTAAA TCTTAGCTTT TACTTTGCTG AATATTCATC TTAAAAGTGA
ACTAGAATCG TATCCACTAT CTCAAAATTG GCATACACCT CTTCCTATCC AGGCGATGAC TAAATGGATT AAAAAGAATG
AGATAATGAA GATTAAAAAA AAAATCCCCT TTTCCCCCTT AGTAAAAAAA TCAAGTCAAA AGAGATTCCA GCCAGTCTGA
TGTCAATTCA TACGCCACAA ATGTTACAGC ATTAGCTGGT GCAGCTTTAA CAGTTGATGG GACTATCCCC TTATATAGAC
CAGCCCAACC CTCCATTTGT AATATTCGCT TTATGGCATC AAGCATATTG CTGTATGCAC GGTGTTCAAC CCGAGCTCCA
TATCTTGGAT GCCTTTGTAG ACCTTCAATC TGCAGCAAAA ACAATGAAGA TTCATAATTT GCTTATTTTT TATGGAGGAA
TGAGGGGTTC AAAATTCTAT CATCCACCTG AAATCTTTTC TTGACCACAT CAAGTGGATG AGTGGCGAGC TTGGCACATG
TTCCTGCACT CACTCCACAG AGGAAAAGCT GAAAGCTAGA GATGTTTTCT GCAGTAGAAT TCGAATATTG ACGTTGATTC
CACGCCTACA TTTTTCCCGC ATAATACATA CATATTAAAA AACAGGTATC AAAGAATTGC TCACTACAAA GTATGAGTAA
AGCATATATC AGTTCTGTGA AGGAATCTTA ATATGATGTT ACCTCAGTAG ACCATATTTG CATTAAAATA AGTTCAAGTA
TTAGTATACT GACATTTGAC ACAGTGAGTT ATGATGATAT TTATTGAAAA GAGAAAAACT CTCCTTCTGT CACTGGCCAC
TAGCAGTTAT AGATATGGAG AGCTGAGACT GGGTATGAGG CATAAACAAC ATTTTGCTCG GACCAAAATT CAAAATTAAC
ATTAACTGCT GCATAGCTTC CTTGTCATTA CAAATAGCCA GTGGGAAAAT AATAACCAAA CAAACATTCA ATACGTGCAT
GCCATAATTA CGTCAAATAC AAATAAGTGG AATGGTAAAT AGAAGAACTG AAATTTTACC ATGGTCCAAC GTTTAAATGT
ATCATAGGTG CCAAATTGTA GAGCTGCATA TGGTATAATC TCAACTAGGG TTGGTGACAA TCCAGCATAC AAGCCTTGGA
AGCCACGAGT CTGCACAATA TCAACAAATG CCGTTCTCAT GTTTGGATAA 

>Vigan.02G324900.01
CCAAAACAAG CCACGAAAAC ATCTTCAATA TTAGGCTTAC ACTACAAGAG ACATCACAAG GCCGCGTTTG GCGTCAAAAC
ACAACGATGG GTCAGGCATT TCGTCGAGCA TCTGGAAGAA TCCGGGCAGC ATCCGAGGCT GACACCTCAT CTTTCTCCAA
GCCAAAGAAC GCCGTTGATC GCCGACCGCC GCCCACGGTT GCCACCGACA AGGCGGCGCA GATCTCGAAA GCCGCCGAAC
AAGACGTACT TCAGGCCGAT GATCGTTCTA GAGTTAATAT GGACAACGTC CTGGAAGAAA GAGATCCCAA ATTTGATGCT
ATGCTTGGTC AAATGGTTGG TAGAATTAAA TCAAAGCCTG GGGGGAAACC TGAGATGGGT GAGGCCTTTG TGGTTGAGAA
GTACAACAGG CCAATGCCCA AATTGCGAAA CACAAAACCA GATTCTGGGC GCTACGAGGA AAGGCAGGTT CCTGCTGGCA
CTTTGAATAT TGCTCAGTTG CGCCATATCA TACTTTTACA CGAAGGTAAG GCTGATGATT ACAATGGACG TATGAATGCT
CAACAGATTG CTGAAAAATT TCAAGTGGAT CTTGTTCAGA TTCAGAGGAT CTTGCAATTC TTATCACAAC CTCCAGAAGG
TAGCAGTAAA GACAAGAACG AAGCACCAAG ATAATAGCTT AACTGACATT ACTCACTGGT TCTTTCTTGT GTTAAAATGG
CTGTTCTAAA TGGATTTCAA GTGCGGACAA AAGTCTTGGG CATTAAAACA TGTCCGAAAG AAAGGACAAT GCCAAAAGGC
CATAACATGA GGTCTTCATT TAACTTGTAA TAGACTATAT TATCAGGTGC TTGTGCAGCC CCTATTCATA GACTCGAATG
ACATCGTGAT ATCAACAATT GCATTTGTAC TTCTGACGAG AATTAACCCT GGAGAGGGTG AGTTGCAATA AGTGTTTTGA
AACCCTACAG CTGAGATATT GTTTGTTGTT TTTGCATTAC TTCACGACAG TTAATAAAAC TGAGCAATTT CAGTTTTGTT
CTTGCAAGAT GCATATATTT GTAAACTCTG ATATTTAGAT GTACTTGCAC TGTTAGACTT ATTCCATGCA GAGAGATTCG
TGTCCCTGCG TCATTAGCCT CGAATTTAAT CACCTCGATC CTAGTCCCTG AGCATAGTTA ATTTGGATTG GTTGCAAAAC
CAGTGCATAT AAAACCCTCA AATTGTGGAA GATGAAGTCC GAATGAAGAC GGATTTAGCT GTTGGTGGGA TTATTCTTGT
TAAGGTGATT TTTACTTCCA AATTTATCCT AAATGGTTCA AATGAAGCGC ACCATTTAGA AAAAGGACAA TTGATGTCAC
TCTGCTAAAT CTTAGCTTTT ACTTTGCTGA ATATTCATCT TAAAAGTGAA CTAGAATCGT ATCCACTATC TCAAAATTGG
CATACACCTC TTCCTATCCA GGCGATGACT AAATGGATTA AAAAGAATGA GATAATGAAG ATTAAAAAAA AAATCCCCTT
TTCCCCCTTA GTAAAAAAAT CAAGTCAAAA GAGATTCCAG CCAGTCTGAT GTCAATTCAT ACGCCACAAA TGTTACAGCA
TTAGCTGGTG CAGCTTTAAC AGTTGATGGG ACTATCCCCT TATATAGACC AGCCCAACCC TCCATTTGTA ATATTCGCTT
TATGGCATCA AGCATATTGC TGTATGCACG GTGTTCAACC CGAGCTCCAT ATCTTGGATG CCTTTGTAGA CCTTCAATCT
GCAGCAAAAA CAATGAAGAT TCATAATTTG CTTATTTTTT ATGGAGGAAT GAGGGGTTCA AAATTCTATC ATCCACCTGA
AATCTTTTCT TGACCACATC AAGTGGATGA GTGGCGAGCT TGGCACATGT TCCTGCACTC ACTCCACAGA GGAAAAGCTG
AAAGCTAGAG ATGTTTTCTG CAGTAGAATT CGAATATTGA CGTTGATTCC ACGCCTACAT TTTTCCCGCA TAATACATAC
ATATTAAAAA ACAGGTATCA AAGAATTGCT CACTACAAAG TATGAGTAAA GCATATATCA GTTCTGTGAA GGAATCTTAA
TATGATGTTA CCTCAGTAGA CCATATTTGC ATTAAAATAA GTTCAAGTAT TAGTATACTG ACATTTGACA CAGTGAGTTA
TGATGATATT TATTGAAAAG AGAAAAACTC TCCTTCTGTC ACTGGCCACT AGCAGTTATA GATATGGAGA GCTGAGACTG
GGTATGAGGC ATAAACAACA TTTTGCTCGG ACCAAAATTC AAAATTAACA TTAACTGCTG CATAGCTTCC TTGTCATTAC
AAATAGCCAG TGGGAAAATA ATAACCAAAC AAACATTCAA TACGTGCATG CCATAATTAC GTCAAATACA AATAAGTGGA
ATGGTAAATA GAAGAACTGA AATTTTACCA TGGTCCAACG TTTAAATGTA TCATAGGTGC CAAATTGTAG AGCTGCATAT
GGTATAATCT CAACTAGGGT TGGTGACAAT CCAGCATACA AGCCTTGGAA GCCACGAGTC TGCACAATAT CAACAAATGC
CGTTCTCATG TTTGGATAA

>Vigan.02G324900.01
ATGGGTCAGG CATTTCGTCG AGCATCTGGA AGAATCCGGG CAGCATCCGA GGCTGACACC TCATCTTTCT CCAAGCCAAA
GAACGCCGTT GATCGCCGAC CGCCGCCCAC GGTTGCCACC GACAAGGCGG CGCAGATCTC GAAAGCCGCC GAACAAGACG
TACTTCAGGC CGATGATCGT TCTAGAGTTA ATATGGACAA CGTCCTGGAA GAAAGAGATC CCAAATTTGA TGCTATGCTT
GGTCAAATGG TTGGTAGAAT TAAATCAAAG CCTGGGGGGA AACCTGAGAT GGGTGAGGCC TTTGTGGTTG AGAAGTACAA
CAGGCCAATG CCCAAATTGC GAAACACAAA ACCAGATTCT GGGCGCTACG AGGAAAGGCA GGTTCCTGCT GGCACTTTGA
ATATTGCTCA GTTGCGCCAT ATCATACTTT TACACGAAGG TAAGGCTGAT GATTACAATG GACGTATGAA TGCTCAACAG
ATTGCTGAAA AATTTCAAGT GGATCTTGTT CAGATTCAGA GGATCTTGCA ATTCTTATCA CAACCTCCAG AAGGTAGCAG
TAAAGACAAG AACGAAGCAC CAAGATAA

>Vigan.02G324900.01
MGQAFRRASG RIRAASEADT SSFSKPKNAV DRRPPPTVAT DKAAQISKAA EQDVLQADDR SRVNMDNVLE ERDPKFDAML
GQMVGRIKSK PGGKPEMGEA FVVEKYNRPM PKLRNTKPDS GRYEERQVPA GTLNIAQLRH IILLHEGKAD DYNGRMNAQQ
IAEKFQVDLV QIQRILQFLS QPPEGSSKDK NEAPR*