GBrowse Details

Vigan.02G310000.01

Basic Information:
Name: Vigan.02G310000.01
Multiple alignment
Variant Information
Position: Chr02:42692827..42696828 (+ strand)
Length: 4002
Functional Information:
Description: Similar to cDNA clone:J023134C17, full insert sequence. [Q7XS49, Oryza sativa subsp. japonica]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.25,29.98,24.60,20.49,40.63,42.21,24.21,17.65
Arabidopsis thaliana homolog: AT4G29960.1
Automatic updates:
Name: NM_001255810 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100815317 (LOC100815317), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001361606 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100813503 (LOC100813503), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:42692827..42692887 (+ strand)
Length: 61
Type: five_prime_UTR
Position: Chr02:42692888..42692977 (+ strand)
Length: 90
Type: CDS
Position: Chr02:42693471..42693688 (+ strand)
Length: 218
Type: CDS
Position: Chr02:42695520..42695756 (+ strand)
Length: 237
Type: CDS
Position: Chr02:42695979..42696127 (+ strand)
Length: 149
Type: CDS
Position: Chr02:42696401..42696594 (+ strand)
Length: 194
Type: CDS
Position: Chr02:42696595..42696828 (+ strand)
Length: 234
Type: three_prime_UTR

>Vigan.02G310000.01 class=Sequence position=Chr02:42692827..42696828 (+ strand)
TTTCATTTTA TTCATTTTCA GGTTTTGAGA CCCAAACACA CTGAACCGAA CGTGATCAAC AATGGCAGAA AACCCTCCCG
AAACGGTGCC GTCTAGCTCA CAACCTTCTT CGTCTTCTTC GTCTCAGAAA TTGCCTCAAG ATTCTCCTCA GGTTCCATCA
CCTACTTCAG CTGCACTTCC CTTTTCGTAT TTTTCGTTTT CCTCTAATGC GCAAACACCC CTTTCCATAT AATTGGAACT
GAAACTAGGG TTATTATAAT TATTGTTCGT TTTATTTTTC ATTTCAAGCC CGTAATTGTT TGATTTCTGT AGCTAATAGA
CCAGGACCAT TCTCCGTACA ACCTAATCGG CGCACGATGT TTTCGGGCAT CAAATCCGTG TTATTTCCCC CTGTTTTAGT
TTTTTTTTTC CTTCTTTCAA ATACGAGCTA AGGACAGAAT TTGGAGCGGA ATAGTTAATG TTAAGTTGGG ATGCGTTAGG
CCTTTTGTCG TAACAACCTA ATTTAGCTCA AATCTGTGGT TTATTATGTA CCATTTTTTA GCTCGGTGAG TGAACACACA
TGTGGAAGAA AATGTGGCCT GAAATGTTGT TTTAAACACA TCTACCTTCA TCTTGGTAAT GGTTTTGTGT GGATGTTGTC
ACAGGTCCCT GCATTTTCGA ATCTTCCGCC GTATTTGGGT GGATATTATC AAATGATTCC TGGTATGTAC CCTGCACTTG
TTCCAGGGTT AACTCTGCCG CAACATGAGG AACATGGGAA CCGCGGAGCT GGCATATATG CTGTTCCTGT TAACTCCTTT
GATAGACAAG TTACTGGACT TCCATGCAAC ACCCTGATTC CGCTGACTTA CCGCATACCC ACGTAAGTGG CAGGTTATTT
TGTTATGATG ACGTTGTGAG GGATGTGAAG CTCAGTTATT GCACAATTTA TATTTTTTAG TCGGATATTT AAGCATAATT
TTCTGCATGG ACATTTTTGA AATGAAAGAG TACGTTTTAT ACCTTTTCAT GCTTTGTTTT TCCGTAGAAC CTTTGGCAAT
CTTTAATGTT TCTACTGACT TGCATTCTCA ACTTGGTCAC AGTGATTGGT GATATAGAAG ACCAATAATT TCTTTAATTG
CTAAATAAAA AACAAAAAAT TGTTTAAATG AAATTATTTA CAGCAGGGAT GAAGTTGTAA CTGCTAGCAA TATGAGGAAT
GACTTTGATG TAAAATTGTT ATTAAATTTA CACTAAGTAG GCAACGAACG CTTGGCATGG ATGATTTTTA GAGGTATAAG
AATGACCGTG CATGAGTTTC CTCTTTGATA ACTATTTTTT CTTGATTTAA TCTAATCTGT CTTTTACATT TTGTGTGGGG
AATCAAAGGT AGATTGATTT AAGGGTTATT GTTATCCGTA AAGGTATGGG GATTTTGGTA GCTGGAAGTA AAATTACAGT
TAAGGATTTG GGGTTAATAT GTTGGGATAA CTCAAGCAAG AAACAATTAA GAATTTGATT GGGGTGGATT GTTAAGACAG
TCTGCTATTC TACCAAGAAA ATTATCTGTC GGGAATGAAG CAATCAAAGA AAAAAATTGT AGCTTATAAC AAGAAGAAAT
CCTCTTCAGA TCTTGAGCTT GTGTCAGCCT GCCAAGTTAT TAACAATTTT CCGCAATCTT ATAATCCGGT CAATGAACTG
AAAGGAAGCA TTGATTTTGA GTCTCATAGG ATTTCAAACA CGATAAGTAG GTTTTGATGC CATGTCCTGG TCCTAAGCCA
ACTATTGCGT GTGTTGTAAA GACACATGAA TGGTTTAATA TTAGAGGGCT CACTTTAAAA ACTTCTCAAC AAACACTCAT
AAGAGAAGAA AATAGGAGGT TTGAGGATTC AAATTGCTCC CGTAAGATAA AATCAATATA TTCTGCTCCA CTTTTTGAGA
ATTTAGATGA TAGGACTCTT TAGAAAAACT GATGTGCATT AAATAATTTT AACACATGGG GAAATTTGAT TCCTTGTATC
TTTATTTTTC TACAAATACT TGTAGAAAAG TTTATATAAA CAATTACGAG CAACCAGGTT CATCTGAAAC TAGAAATACA
CAGCTTCGAA AAGTTCTAGC AAGCACTCAT AGGTCATCTT TGGTTGTCCT TCGGACCTCC AAATCTTCCA GAAAATTTGG
TCCCAACTCT GTATGCTTGA CATTTGATAA CATGCACAAC ACTTCTTGGG TTTGTACCAC ATTATAGGAA GCTAATGGCT
ATACTAGGAG TTACCCTAAA ACTACCACTA AGGCTATAGA GAAGCTAAAA GATAAACATT GATATTTTTG TATTCATTAT
AAGGGGTAAA GAAGAGTACA CTTATATGGT AAAAGATATG CCAAAAACTG AATAATGACC GAAACATTCA AGGAAAATTG
GACCTGATTC TGATTCACTA GCACCATGAA CTAGACTTGC TGTTGGATTT TCTTTTTTGT TCCTGCATCA GTTTTGGATG
TCCTGTATAC GTTCAATGTT TTATCAATAG ATCTGGTGAT TGATGCTATG TTTTTCTTTC ATACCAGTTT CATTTAGTGT
TTGTTTATAT TTCAGAAAAA GATAGTAGCA AGTGTAAAAT TGATGATAAT TCTATTTTAG TTTTATTTGT TTGTTAGCAA
ATATGTTTAT TAATGTTAAT TAATGGTTTC TGTAACTGAA TGGCCACCGT CAGCAGTAGG CCAAGTTCTG AAGCTGTTGC
TGCCAGTGAA AATCAGGGGC AAGCGGGACA GCAACCTCAA CAGCAGCAGC CTGCACCTCA AAGACAAGTT GTTGTTAGGA
GATTTCAAAT TGCATTTCAA ATTGATTTAT TGCTTATGTT GAAGCTGGCA GCTGTGATCT TTTTATTTAA CCAAGATGGA
TCAAGGCAGA GGCTTATTGT CCTTGTGTTC TTTGCTGCTA TTGTATATTT GTGAGTACAA CTATTATCTT TTTTTTTTTG
CAATTTTTTA AATATTTCTC TGCTTGCAAG TTTTGCTGTA CTCATCAAAC CCACGGAATG CTTCTTATAT AAATCCTCCA
ACTCCCCGAT CTAACCTTTT TGTTGTCCAA TTCTTCATAT AATATAAGTC TACTAATATT GTTTTTGTTG CGAATGGAAG
CTGTAGTATT TATTAATGGA CATGTGTGGC AGATACCAAA CTGGAGCTTT GACACCAATA ATAAGATGGC TTTCACGAGG
TATGCAGAGA GCAGCAGCAC CTCCTCATCC AGCAAGACCT GCAGCCAGAG CTGAAAATGT TCCTCCACCC AGGCAAGAGG
GTGATAATGT TACTCCAGCA GGTATGATTT GTACATTTTA TGCATGGGAT TTAGTGAGCA TTTTTTGGGA ATCACTAGTG
ATATAGCTTA TGTGATTTAT AATATAATTT GGAAGCCTTT ACTTCTTGAA AGCTTGCGAG GTTCAGTTTA TTTTGTTATT
ATTTATTCTT TAATTTTCTT TAGGTTAAAT TTAATTTTCC GAATACTTGT ACTGTTCTTG TATGGAATAA GTATCAATTG
AAGTTTTGAT CACGCATTGA CACATGCTTA CCTTTGCCTC TTATCTATTG GAAGAGGGTC AACCTGAAGC CGAGAATGGG
AACCAGCCTG CAAATGAAGC AGACCGGGCA GTTGGGAATG AAAATGTTGC AGAAGTTGGA GGAGTAAATG GTGGGAATCA
GTGGTGGGGC ATTGTAAAGG AGATTCAGAT GATTGTCTTT GGATTTATCA CTTCCCTTCT CCCTGGGTTC CACAACCATA
TGGATTGAAC TATATTTTGT AGTTTACAAG GTTTGTGAAA TTGACATCTA TGGTCTGAGA GACCATGCCC TGAAATAAAA
ATGTATAGCA TCAGAAGTTC CAAGCGTCAT AACTAATACA TACATAGTTA GGTGCTACTA TAATCCAGAG GAAGATATGG
TGCAACTATA GGGTGCCGTT TTTGTATCAT TACTTGGTTT GTTCATAAAA CAGCTTCCAT AGTAGGACGT TAGATTTTTT
TT

>Vigan.02G310000.01
TTTCATTTTA TTCATTTTCA GGTTTTGAGA CCCAAACACA CTGAACCGAA CGTGATCAAC AATGGCAGAA AACCCTCCCG
AAACGGTGCC GTCTAGCTCA CAACCTTCTT CGTCTTCTTC GTCTCAGAAA TTGCCTCAAG ATTCTCCTCA GGTCCCTGCA
TTTTCGAATC TTCCGCCGTA TTTGGGTGGA TATTATCAAA TGATTCCTGG TATGTACCCT GCACTTGTTC CAGGGTTAAC
TCTGCCGCAA CATGAGGAAC ATGGGAACCG CGGAGCTGGC ATATATGCTG TTCCTGTTAA CTCCTTTGAT AGACAAGTTA
CTGGACTTCC ATGCAACACC CTGATTCCGC TGACTTACCG CATACCCACC AGTAGGCCAA GTTCTGAAGC TGTTGCTGCC
AGTGAAAATC AGGGGCAAGC GGGACAGCAA CCTCAACAGC AGCAGCCTGC ACCTCAAAGA CAAGTTGTTG TTAGGAGATT
TCAAATTGCA TTTCAAATTG ATTTATTGCT TATGTTGAAG CTGGCAGCTG TGATCTTTTT ATTTAACCAA GATGGATCAA
GGCAGAGGCT TATTGTCCTT GTGTTCTTTG CTGCTATTGT ATATTTATAC CAAACTGGAG CTTTGACACC AATAATAAGA
TGGCTTTCAC GAGGTATGCA GAGAGCAGCA GCACCTCCTC ATCCAGCAAG ACCTGCAGCC AGAGCTGAAA ATGTTCCTCC
ACCCAGGCAA GAGGGTGATA ATGTTACTCC AGCAGAGGGT CAACCTGAAG CCGAGAATGG GAACCAGCCT GCAAATGAAG
CAGACCGGGC AGTTGGGAAT GAAAATGTTG CAGAAGTTGG AGGAGTAAAT GGTGGGAATC AGTGGTGGGG CATTGTAAAG
GAGATTCAGA TGATTGTCTT TGGATTTATC ACTTCCCTTC TCCCTGGGTT CCACAACCAT ATGGATTGAA CTATATTTTG
TAGTTTACAA GGTTTGTGAA ATTGACATCT ATGGTCTGAG AGACCATGCC CTGAAATAAA AATGTATAGC ATCAGAAGTT
CCAAGCGTCA TAACTAATAC ATACATAGTT AGGTGCTACT ATAATCCAGA GGAAGATATG GTGCAACTAT AGGGTGCCGT
TTTTGTATCA TTACTTGGTT TGTTCATAAA ACAGCTTCCA TAGTAGGACG TTAGATTTTT TTT

>Vigan.02G310000.01
ATGGCAGAAA ACCCTCCCGA AACGGTGCCG TCTAGCTCAC AACCTTCTTC GTCTTCTTCG TCTCAGAAAT TGCCTCAAGA
TTCTCCTCAG GTCCCTGCAT TTTCGAATCT TCCGCCGTAT TTGGGTGGAT ATTATCAAAT GATTCCTGGT ATGTACCCTG
CACTTGTTCC AGGGTTAACT CTGCCGCAAC ATGAGGAACA TGGGAACCGC GGAGCTGGCA TATATGCTGT TCCTGTTAAC
TCCTTTGATA GACAAGTTAC TGGACTTCCA TGCAACACCC TGATTCCGCT GACTTACCGC ATACCCACCA GTAGGCCAAG
TTCTGAAGCT GTTGCTGCCA GTGAAAATCA GGGGCAAGCG GGACAGCAAC CTCAACAGCA GCAGCCTGCA CCTCAAAGAC
AAGTTGTTGT TAGGAGATTT CAAATTGCAT TTCAAATTGA TTTATTGCTT ATGTTGAAGC TGGCAGCTGT GATCTTTTTA
TTTAACCAAG ATGGATCAAG GCAGAGGCTT ATTGTCCTTG TGTTCTTTGC TGCTATTGTA TATTTATACC AAACTGGAGC
TTTGACACCA ATAATAAGAT GGCTTTCACG AGGTATGCAG AGAGCAGCAG CACCTCCTCA TCCAGCAAGA CCTGCAGCCA
GAGCTGAAAA TGTTCCTCCA CCCAGGCAAG AGGGTGATAA TGTTACTCCA GCAGAGGGTC AACCTGAAGC CGAGAATGGG
AACCAGCCTG CAAATGAAGC AGACCGGGCA GTTGGGAATG AAAATGTTGC AGAAGTTGGA GGAGTAAATG GTGGGAATCA
GTGGTGGGGC ATTGTAAAGG AGATTCAGAT GATTGTCTTT GGATTTATCA CTTCCCTTCT CCCTGGGTTC CACAACCATA
TGGATTGA

>Vigan.02G310000.01
MAENPPETVP SSSQPSSSSS SQKLPQDSPQ VPAFSNLPPY LGGYYQMIPG MYPALVPGLT LPQHEEHGNR GAGIYAVPVN
SFDRQVTGLP CNTLIPLTYR IPTSRPSSEA VAASENQGQA GQQPQQQQPA PQRQVVVRRF QIAFQIDLLL MLKLAAVIFL
FNQDGSRQRL IVLVFFAAIV YLYQTGALTP IIRWLSRGMQ RAAAPPHPAR PAARAENVPP PRQEGDNVTP AEGQPEAENG
NQPANEADRA VGNENVAEVG GVNGGNQWWG IVKEIQMIVF GFITSLLPGF HNHMD*