GBrowse Details

Vigan.02G306400.01

Basic Information:
Name: Vigan.02G306400.01
Multiple alignment
Variant Information
Position: Chr02:42317624..42319364 (- strand)
Length: 1741
Functional Information:
Description: Similar to Xyloglucan endotransglucosylase/hydrolase. [V7AYV3, Phaseolus vulgaris]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: cellular glucan metabolic process (GO:0006073)
Cellular Component: cell wall (GO:0005618)
Cellular Component: apoplast (GO:0048046)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762)
InterPro: Glycoside hydrolase, family 16 (IPR000757)
Glycoside hydrolase, family 16, active site (IPR008263)
Beta-glucanase (IPR008264)
Concanavalin A-like lectin/glucanases superfamily (IPR008985)
Xyloglucan endo-transglycosylase, C-terminal (IPR010713)
Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
Xyloglucan endotransglucosylase/hydrolase (IPR016455)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.56,0.13,563.49,91.51,2.70,86.48,1.28,102.71
Automatic updates:
Name: DQ382358 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max xyloglucan endotransglycosylase precursor (XET1) mRNA, partial cds.
PubMed ID: 17916637 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:42317624..42317945 (- strand)
Length: 322
Type: three_prime_UTR
Position: Chr02:42317946..42318318 (- strand)
Length: 373
Type: CDS
Position: Chr02:42318505..42318698 (- strand)
Length: 194
Type: CDS
Position: Chr02:42318875..42319228 (- strand)
Length: 354
Type: CDS
Position: Chr02:42319229..42319364 (- strand)
Length: 136
Type: five_prime_UTR

>Vigan.02G306400.01 class=Sequence position=Chr02:42317624..42319364 (- strand)
ATCTACTACA TAAGTTAGAT CATTTTCCCT TTCTCACAAC CACTTGCTCT ACTTTCAAAT CCAATCACCC TTTACATTAA
TAATTGCCTC TTATCAACAT CTTGGCCTCT ATAAATAGCT TCAAAACTTG ACTTGCATGC ACCACTTTCA CCAAACATAT
CTATTTTTCC CTCTCTATTG CTACACAAAA CCAAGGCATA TCATCATCAT CATCACCACT TTCGTTGAGA TGAAAAATAT
TGGGTTTCTT GCGGTGGTGG TAGCTACGTT TGTGGTGGCA GCCACCGCCG GTAGCTTCTT CCAAGACTTT GAGTTAACAT
GGGGTGGTGG TCGTGCCAAA ATCCTTGAAA ATGGAAACCT TCTTACTCTC TCCCTAGACA AGGCTTCTGG CTCCGGCTTT
CGTTCCAAAA ACGAGTACTT GTTTGGAAAA ATTGACATGC AGCTCAAACT CGTGCCTGGA AACTCAGCTG GCACTGTCAC
AGCCTATTAC GTAAGTGATT GACTCGAACT AGTTTAGCTC TTCATGGTTT TATTTTGAAC TCAGATAAAA TTTGCACGCT
CGTGTGCAGA TAAACACATC GATCAAACAT TAAAGAAATC CGTTAAAGCG TTGTTTAGCA TGAAATGTTG TGAAATAATA
AATGGTGTTG CTTGTGATTT ATGCAGCTGT CTTCTCTGGG ACCTACTCAT GATGAAATAG ACTTCGAATT TTTGGGCAAC
TTGAGTGGTG ATCCTTACAC TCTTCACACC AACGTATTCA GCCAAGGGAA AGGGAATAGA GAACAACAGT TCCATCTATG
GTTTGACCCC ACCAAGGACT TCCACACATA CTCCGTCCAA TGGAATCCTG CAAGCATCAT GTAAGAGACC ATAACCAGTT
AACATCTCAA TTTCCCATGA AAGATGCACT TTTTCCTTTT TTTCTTTATA TTTGATTACA AATGGATAAA TTTTTCAAAA
CCATCAGCTA TTATATTCAT CTTTCGCACA TTAATTTGGC TACTCACTCA CAAAAAATCA ACCTTTTCTG TGATTTCATC
TATCAGATTT TCTGTGGATG GAACACCGAT AAGGGAGTTC AAGAATTTGG AGACAAAGGG TGTTCCATTC CCCAAGAACC
AACCTATGAG AATATACTCT AGCTTATGGG ATGCTGAGGA TTGGGCCACG AGAGGTGGGC TTGTGAAAAC GGACTGGAGC
CAGGCCCCAT TCACGGCCTC ATACAGAAAC TTCAATGCAG AAGCTTGTGT TTGGTCTTCT TCAGGTTCTT CTTCGTGTTC
TTCCTCCTCT GGCCAATCAC TGGACGCCAC GGGGCAAGCC AAGCTTCGTT TGGTGCAAAA GAACTACATG GTTTACAACT
ACTGCACTGA TATCAGACGT TTTCCACAAG GGCTCCCTCC AGAATGTTCC TTTGCTTGAG GATCAACATG AACATCAAAC
CAAAGTTGCA TATATTATAC TTTAGAAATT GTCCCAATAT ACGTAAATGC ATGTTTTGTT AATTCCTTTT CTTGTATGAA
TTTGTGGAGC TAAAACTATG ATTGTTGGTC TGTGCTTTGT TGAGCACTGA CAGATAAATT GTGTGCAAAA TCATATTCAT
GGCACTGTGT AATGTGCTGC AATTGTAAAC TATGCCAATT AATAAATTTG TCTCAGAGGG TTAAAAAGCT CATGCAACTC
TTATTCTATT GGCTTCCCAA AAGTGCATGA TACAAAATAT AGTAATCTAC AGTTTCATGC C

>Vigan.02G306400.01
ATCTACTACA TAAGTTAGAT CATTTTCCCT TTCTCACAAC CACTTGCTCT ACTTTCAAAT CCAATCACCC TTTACATTAA
TAATTGCCTC TTATCAACAT CTTGGCCTCT ATAAATAGCT TCAAAACTTG ACTTGCATGC ACCACTTTCA CCAAACATAT
CTATTTTTCC CTCTCTATTG CTACACAAAA CCAAGGCATA TCATCATCAT CATCACCACT TTCGTTGAGA TGAAAAATAT
TGGGTTTCTT GCGGTGGTGG TAGCTACGTT TGTGGTGGCA GCCACCGCCG GTAGCTTCTT CCAAGACTTT GAGTTAACAT
GGGGTGGTGG TCGTGCCAAA ATCCTTGAAA ATGGAAACCT TCTTACTCTC TCCCTAGACA AGGCTTCTGG CTCCGGCTTT
CGTTCCAAAA ACGAGTACTT GTTTGGAAAA ATTGACATGC AGCTCAAACT CGTGCCTGGA AACTCAGCTG GCACTGTCAC
AGCCTATTAC CTGTCTTCTC TGGGACCTAC TCATGATGAA ATAGACTTCG AATTTTTGGG CAACTTGAGT GGTGATCCTT
ACACTCTTCA CACCAACGTA TTCAGCCAAG GGAAAGGGAA TAGAGAACAA CAGTTCCATC TATGGTTTGA CCCCACCAAG
GACTTCCACA CATACTCCGT CCAATGGAAT CCTGCAAGCA TCATATTTTC TGTGGATGGA ACACCGATAA GGGAGTTCAA
GAATTTGGAG ACAAAGGGTG TTCCATTCCC CAAGAACCAA CCTATGAGAA TATACTCTAG CTTATGGGAT GCTGAGGATT
GGGCCACGAG AGGTGGGCTT GTGAAAACGG ACTGGAGCCA GGCCCCATTC ACGGCCTCAT ACAGAAACTT CAATGCAGAA
GCTTGTGTTT GGTCTTCTTC AGGTTCTTCT TCGTGTTCTT CCTCCTCTGG CCAATCACTG GACGCCACGG GGCAAGCCAA
GCTTCGTTTG GTGCAAAAGA ACTACATGGT TTACAACTAC TGCACTGATA TCAGACGTTT TCCACAAGGG CTCCCTCCAG
AATGTTCCTT TGCTTGAGGA TCAACATGAA CATCAAACCA AAGTTGCATA TATTATACTT TAGAAATTGT CCCAATATAC
GTAAATGCAT GTTTTGTTAA TTCCTTTTCT TGTATGAATT TGTGGAGCTA AAACTATGAT TGTTGGTCTG TGCTTTGTTG
AGCACTGACA GATAAATTGT GTGCAAAATC ATATTCATGG CACTGTGTAA TGTGCTGCAA TTGTAAACTA TGCCAATTAA
TAAATTTGTC TCAGAGGGTT AAAAAGCTCA TGCAACTCTT ATTCTATTGG CTTCCCAAAA GTGCATGATA CAAAATATAG
TAATCTACAG TTTCATGCC

>Vigan.02G306400.01
ATGCACCACT TTCACCAAAC ATATCTATTT TTCCCTCTCT ATTGCTACAC AAAACCAAGG CATATCATCA TCATCATCAC
CACTTTCGTT GAGATGAAAA ATATTGGGTT TCTTGCGGTG GTGGTAGCTA CGTTTGTGGT GGCAGCCACC GCCGGTAGCT
TCTTCCAAGA CTTTGAGTTA ACATGGGGTG GTGGTCGTGC CAAAATCCTT GAAAATGGAA ACCTTCTTAC TCTCTCCCTA
GACAAGGCTT CTGGCTCCGG CTTTCGTTCC AAAAACGAGT ACTTGTTTGG AAAAATTGAC ATGCAGCTCA AACTCGTGCC
TGGAAACTCA GCTGGCACTG TCACAGCCTA TTACCTGTCT TCTCTGGGAC CTACTCATGA TGAAATAGAC TTCGAATTTT
TGGGCAACTT GAGTGGTGAT CCTTACACTC TTCACACCAA CGTATTCAGC CAAGGGAAAG GGAATAGAGA ACAACAGTTC
CATCTATGGT TTGACCCCAC CAAGGACTTC CACACATACT CCGTCCAATG GAATCCTGCA AGCATCATAT TTTCTGTGGA
TGGAACACCG ATAAGGGAGT TCAAGAATTT GGAGACAAAG GGTGTTCCAT TCCCCAAGAA CCAACCTATG AGAATATACT
CTAGCTTATG GGATGCTGAG GATTGGGCCA CGAGAGGTGG GCTTGTGAAA ACGGACTGGA GCCAGGCCCC ATTCACGGCC
TCATACAGAA ACTTCAATGC AGAAGCTTGT GTTTGGTCTT CTTCAGGTTC TTCTTCGTGT TCTTCCTCCT CTGGCCAATC
ACTGGACGCC ACGGGGCAAG CCAAGCTTCG TTTGGTGCAA AAGAACTACA TGGTTTACAA CTACTGCACT GATATCAGAC
GTTTTCCACA AGGGCTCCCT CCAGAATGTT CCTTTGCTTG A

>Vigan.02G306400.01
MHHFHQTYLF FPLYCYTKPR HIIIIITTFV EMKNIGFLAV VVATFVVAAT AGSFFQDFEL TWGGGRAKIL ENGNLLTLSL
DKASGSGFRS KNEYLFGKID MQLKLVPGNS AGTVTAYYLS SLGPTHDEID FEFLGNLSGD PYTLHTNVFS QGKGNREQQF
HLWFDPTKDF HTYSVQWNPA SIIFSVDGTP IREFKNLETK GVPFPKNQPM RIYSSLWDAE DWATRGGLVK TDWSQAPFTA
SYRNFNAEAC VWSSSGSSSC SSSSGQSLDA TGQAKLRLVQ KNYMVYNYCT DIRRFPQGLP PECSFA*