GBrowse Details

Vigan.02G304700.01

Basic Information:
Name: Vigan.02G304700.01
Multiple alignment
Variant Information
Position: Chr02:42076060..42079344 (+ strand)
Length: 3285
Functional Information:
Description: Similar to Uncharacterized protein. [I1L1J5, Glycine max]
GO: Biological Process: nucleosome assembly (GO:0006334)
Cellular Component: nucleus (GO:0005634)
InterPro: Nucleosome assembly protein (NAP) (IPR002164)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:124.30,92.66,45.30,53.17,74.99,47.11,74.02,56.50
Automatic updates:
Name: NM_001251385 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max nucleosome assembly protein 1 (SNAP-1), mRNA.
PubMed ID: 8544812 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:42076060..42076251 (+ strand)
Length: 192
Type: five_prime_UTR
Position: Chr02:42076252..42076297 (+ strand)
Length: 46
Type: CDS
Position: Chr02:42076404..42076447 (+ strand)
Length: 44
Type: CDS
Position: Chr02:42076620..42076715 (+ strand)
Length: 96
Type: CDS
Position: Chr02:42077147..42077239 (+ strand)
Length: 93
Type: CDS
Position: Chr02:42077472..42077550 (+ strand)
Length: 79
Type: CDS
Position: Chr02:42077626..42077687 (+ strand)
Length: 62
Type: CDS
Position: Chr02:42077797..42077981 (+ strand)
Length: 185
Type: CDS
Position: Chr02:42078097..42078274 (+ strand)
Length: 178
Type: CDS
Position: Chr02:42078361..42078404 (+ strand)
Length: 44
Type: CDS
Position: Chr02:42078553..42078745 (+ strand)
Length: 193
Type: CDS
Position: Chr02:42079025..42079093 (+ strand)
Length: 69
Type: CDS
Position: Chr02:42079094..42079344 (+ strand)
Length: 251
Type: three_prime_UTR

>Vigan.02G304700.01 class=Sequence position=Chr02:42076060..42079344 (+ strand)
GTCACAGAGA TTTTTAGCAT ATTAAATTAT TTAATTATGA AAATAAAATA ATAGTAGTAA ATAATAATAG TGTGAGGGTA
AGAGTGTGTT TAAAAAGAGT GGGAGAAGAA GACTCGACGG CATCGTCAAA CCCTGCTTCA TTCCACTCTT TCTAGGGTTT
TAGTTCTCTT TTCCTCTTCA ACCTTCTTCT CAATGTCCAA CAACAACGAA AACATCACCA TGACCGATCT CACTTCTGGT
TCTTTCTCAT TCCTCTCTCA ATTTCCTTTC TCTTTCTTTC TTTTCCTTTC TCAATCTTCT TTTTCACTTC TAATTTGCTG
ACTTCGATTG GTTTTCCTAT GCAGCCCTCA ACGAAGACAA TCGCGCCGAT CTAGTCAGTG CTCTCAAGGT ATGCTATACT
GTTTTGCAGT TCCTGAAATC GAATTTGTTT GCTCTCTGTA AAGTTTTATG GATAACGATT CTTCTGCTTG CTTAGCCAGA
ATACAAGTTT TTTGATGTTT GCTAATGTTT TGGATTAATC TATTGGTATA TGATTATTGC GGGACTGAAC TTGTGTGCAG
AGTAAGATAC AGAGTCTGGC TGGACAGCAT TCGGATGTTC TGGAGACTTT ATCGCCTAAC GTCAGGAAGC GTGTTGAATC
TCTTAGAGAG ATTCAGGTAT ATCCTCTTGT TGATTCTTCA GTATCGATGC TGCTTTTTGT GGGTAGCTTA TATTTTTTAA
GTTCGAATTT TAATTGGGAG GATTGATTTG TTGAGTTTCT GATTTTTGTT GAACTTTTGC ATAATCAGAA ATTAGTTTTG
ACTGGGGCAA AACTTTTTTG CAATGATCTA AACTTCTTTT TTTCGATATT TTATAATTTA GCCCATCTAT CTGTATTTAT
TATGTTATAT TATGTAATGG GGGAAAAATA ATTGTTGATT TTTTTTTTAA TATTTTGAAT TAGTGTTTTT ATCTCTATGG
TTAGACCCTT TTCACTGATT GTTTTTGAAA TGAGCTTCTC CTTTATTAAT CTGTTCAGTT TAAATTAGCT ATTGTGAATG
CGTTGTTGCA TAATGCCAGC TTCTGAATAT GTTTATTGAT TACGCAGGGT AAACATGACG AACTAGAGGC AGAATTCTTC
AAGGAGAGAG AAGCTCTTGA AGCTAAGTAC CAAAAGTTGT ATCAGCCGTT ATACACAAAG GTATCCTGAG TATTCTGTAA
CGTAGAGACA TGCATGTGAT GTTTAAGTTA TCTTTTTGTG TTCCATAACA CGCTTCTTGT AGATACCAGA CTTGATGCTA
TTTGAAGCAG ACATTTTTTG TTTCTATTAA TGATCTTTTA CTTTTTTTTG AAATTCTTGA TTCTGATTTG TATTGGATAA
TTTGATTTGA TGTAATATTC TTGTCAATGG TCTTGTTAAT AAATGGATGC AGCGCTATGA AATAGTAAAT GGTGTTACTG
AAGTGGAAGG ACAAGCAGTT GAAACAACAG ATGGATCAGA AGAGGATAAT GGTGAGTAGA GACTATAAAA TGTCTCCTTA
TTCTGTTGTT TCAATTCTGA GATAGCAATT TGCTTGTGAT TTGTAGAGAA AGGAGTACCT TCTTTTTGGC TCAATGCAAT
GAAAAATAAT GATGTGTTGG CTGAAGAGGT TAGTCAATTT CTTACCTGCT GAATCTTCCT AGTTTTGCAT TGAAGTTACA
TTTTTAGTTA GACTCAATGT TTTTAAGTGA TCCTTTTACT GCTTTTTTGT GAAGTAGATT TCAGAGCGTG ATGAAGGTGC
TCTCAAGTTT CTAAAAGACA TTAAGTGGGG CCGGATAGAT AACCCTAAAG GATTCAAGCT TGATTTCTTT TTTGATACCA
ATCCGTACTT TTCAAACTCT GTCTTGACTA AAACATATCA TATGATTGAT GAGGATGAGC CTATATTGGA GAAAGCAATT
GGGTACGGTG TTCATTTTAC ATGGTGGTGT TATGTAATGT GTTTACAATG TTTACAATAT TGTTCAAAGG GTTAGGCTTG
ATGTAGATTA AGTTTTGGTT GCTACCCTTT TTAATAGGAC GGAAATTGAA TGGTACCCGG GAAAATGCTT GACTCAGAAG
GTGTTGAAGA AAAAGCCCAA GAAGGGTTCA AAGAATGCTA AACCAATTAC CAAAACTGAA AACTGTGAAA GCTTCTTCAA
TTTTTTCAAA CCACCAGAAG TTCCTGAAGA TGATGATGAC ATTGATGAAG ATTTGGTATG ACATTTTTGT CACAATAAAC
TCAAGGCTAA AACTAAATAC GAAACTTGTG TATTGTTATA ATAGTTTCAT TTTTTCTGCA GGCCGAGGAA CTTCAGAACC
AAATGGAACA AGATTATGAC ATTGGGTAAG CTTGATTGAT GTTTTTCATT AGTACGAACC TTATATTTTT TATTATCCAA
CAAGTTGCAC GGTTATCTTA TGCTGTCTAA GCATAACGTG GCGCTCCTTG TATCTGTATT CTTGAATCTG AGTTAATCTC
GTTTCCTGTT TAGGTCAACT ATAAGGGACA AAATTATCCC TCATGCAGTA TCTTGGTTTA CTGGGGAGGC TGTTCAGGGA
GATGAGTTTG AAGACCTGGA GGATGATGAG GACGAAGATG ATGATGAGGA GGATGAAGAT GAGGATGAGG ATGAAGATGA
TGATGATGAC GAGGAAGAGG AGGAAGACAG TAAGACTAAA AAGAAGGTAT AGTTTAATTT GTTTGGAGTA TTGAAACCTT
GGTTTGTTTG TTATTTGATA GGTTTGAAGC TGAATTAATG CCTTTTTTTT TACCTACATT GTTACCAATT TCCTTTGGCA
TGTTGCAGTC ATCTGCCACT AACGTGAGAT ATTTTTGTTG TGGTCTGAAT GAAATTATTC ATGGACACAT AATGGTTTCT
GTCTTAAGTT TGTTTGCTAT TGTGTAGTTA ACATTCTCTT TATTTCCATT ACTCTGGTCA TTATATTTGT ATTCCTGATT
TTCAGAAGAG TGGAAGGGCA CAGATTGGTG ATGGTCAGCA GGGTGAGCGA CCTCCAGAGT GCAAGCAGCA GTAATTTAGT
TCTTTGATGT TTGTTATGCA GCTGATGGGT ATTTTTGAGG TCCTATGGTG CTTGATGGGT TTCAGTTTCG TGCAGTTTTG
GGTGGTCCTT GATTCATTTT CCTCCCTAGA TTCTATAGTC TGAATTTATT TTAGTCCCTT CTTTTTTTCC ATTCATTCGG
AGAGAATGTG GTTATTATAT ATAGTCAGGT ATACTATGAT TTGTTATTTT GGAATTTATG TCATTTCAGA TACTGAATTA
TTTTA

>Vigan.02G304700.01
GTCACAGAGA TTTTTAGCAT ATTAAATTAT TTAATTATGA AAATAAAATA ATAGTAGTAA ATAATAATAG TGTGAGGGTA
AGAGTGTGTT TAAAAAGAGT GGGAGAAGAA GACTCGACGG CATCGTCAAA CCCTGCTTCA TTCCACTCTT TCTAGGGTTT
TAGTTCTCTT TTCCTCTTCA ACCTTCTTCT CAATGTCCAA CAACAACGAA AACATCACCA TGACCGATCT CACTTCTGCC
CTCAACGAAG ACAATCGCGC CGATCTAGTC AGTGCTCTCA AGAGTAAGAT ACAGAGTCTG GCTGGACAGC ATTCGGATGT
TCTGGAGACT TTATCGCCTA ACGTCAGGAA GCGTGTTGAA TCTCTTAGAG AGATTCAGGG TAAACATGAC GAACTAGAGG
CAGAATTCTT CAAGGAGAGA GAAGCTCTTG AAGCTAAGTA CCAAAAGTTG TATCAGCCGT TATACACAAA GCGCTATGAA
ATAGTAAATG GTGTTACTGA AGTGGAAGGA CAAGCAGTTG AAACAACAGA TGGATCAGAA GAGGATAATG AGAAAGGAGT
ACCTTCTTTT TGGCTCAATG CAATGAAAAA TAATGATGTG TTGGCTGAAG AGATTTCAGA GCGTGATGAA GGTGCTCTCA
AGTTTCTAAA AGACATTAAG TGGGGCCGGA TAGATAACCC TAAAGGATTC AAGCTTGATT TCTTTTTTGA TACCAATCCG
TACTTTTCAA ACTCTGTCTT GACTAAAACA TATCATATGA TTGATGAGGA TGAGCCTATA TTGGAGAAAG CAATTGGGAC
GGAAATTGAA TGGTACCCGG GAAAATGCTT GACTCAGAAG GTGTTGAAGA AAAAGCCCAA GAAGGGTTCA AAGAATGCTA
AACCAATTAC CAAAACTGAA AACTGTGAAA GCTTCTTCAA TTTTTTCAAA CCACCAGAAG TTCCTGAAGA TGATGATGAC
ATTGATGAAG ATTTGGCCGA GGAACTTCAG AACCAAATGG AACAAGATTA TGACATTGGG TCAACTATAA GGGACAAAAT
TATCCCTCAT GCAGTATCTT GGTTTACTGG GGAGGCTGTT CAGGGAGATG AGTTTGAAGA CCTGGAGGAT GATGAGGACG
AAGATGATGA TGAGGAGGAT GAAGATGAGG ATGAGGATGA AGATGATGAT GATGACGAGG AAGAGGAGGA AGACAGTAAG
ACTAAAAAGA AGAAGAGTGG AAGGGCACAG ATTGGTGATG GTCAGCAGGG TGAGCGACCT CCAGAGTGCA AGCAGCAGTA
ATTTAGTTCT TTGATGTTTG TTATGCAGCT GATGGGTATT TTTGAGGTCC TATGGTGCTT GATGGGTTTC AGTTTCGTGC
AGTTTTGGGT GGTCCTTGAT TCATTTTCCT CCCTAGATTC TATAGTCTGA ATTTATTTTA GTCCCTTCTT TTTTTCCATT
CATTCGGAGA GAATGTGGTT ATTATATATA GTCAGGTATA CTATGATTTG TTATTTTGGA ATTTATGTCA TTTCAGATAC
TGAATTATTT TA

>Vigan.02G304700.01
ATGTCCAACA ACAACGAAAA CATCACCATG ACCGATCTCA CTTCTGCCCT CAACGAAGAC AATCGCGCCG ATCTAGTCAG
TGCTCTCAAG AGTAAGATAC AGAGTCTGGC TGGACAGCAT TCGGATGTTC TGGAGACTTT ATCGCCTAAC GTCAGGAAGC
GTGTTGAATC TCTTAGAGAG ATTCAGGGTA AACATGACGA ACTAGAGGCA GAATTCTTCA AGGAGAGAGA AGCTCTTGAA
GCTAAGTACC AAAAGTTGTA TCAGCCGTTA TACACAAAGC GCTATGAAAT AGTAAATGGT GTTACTGAAG TGGAAGGACA
AGCAGTTGAA ACAACAGATG GATCAGAAGA GGATAATGAG AAAGGAGTAC CTTCTTTTTG GCTCAATGCA ATGAAAAATA
ATGATGTGTT GGCTGAAGAG ATTTCAGAGC GTGATGAAGG TGCTCTCAAG TTTCTAAAAG ACATTAAGTG GGGCCGGATA
GATAACCCTA AAGGATTCAA GCTTGATTTC TTTTTTGATA CCAATCCGTA CTTTTCAAAC TCTGTCTTGA CTAAAACATA
TCATATGATT GATGAGGATG AGCCTATATT GGAGAAAGCA ATTGGGACGG AAATTGAATG GTACCCGGGA AAATGCTTGA
CTCAGAAGGT GTTGAAGAAA AAGCCCAAGA AGGGTTCAAA GAATGCTAAA CCAATTACCA AAACTGAAAA CTGTGAAAGC
TTCTTCAATT TTTTCAAACC ACCAGAAGTT CCTGAAGATG ATGATGACAT TGATGAAGAT TTGGCCGAGG AACTTCAGAA
CCAAATGGAA CAAGATTATG ACATTGGGTC AACTATAAGG GACAAAATTA TCCCTCATGC AGTATCTTGG TTTACTGGGG
AGGCTGTTCA GGGAGATGAG TTTGAAGACC TGGAGGATGA TGAGGACGAA GATGATGATG AGGAGGATGA AGATGAGGAT
GAGGATGAAG ATGATGATGA TGACGAGGAA GAGGAGGAAG ACAGTAAGAC TAAAAAGAAG AAGAGTGGAA GGGCACAGAT
TGGTGATGGT CAGCAGGGTG AGCGACCTCC AGAGTGCAAG CAGCAGTAA

>Vigan.02G304700.01
MSNNNENITM TDLTSALNED NRADLVSALK SKIQSLAGQH SDVLETLSPN VRKRVESLRE IQGKHDELEA EFFKEREALE
AKYQKLYQPL YTKRYEIVNG VTEVEGQAVE TTDGSEEDNE KGVPSFWLNA MKNNDVLAEE ISERDEGALK FLKDIKWGRI
DNPKGFKLDF FFDTNPYFSN SVLTKTYHMI DEDEPILEKA IGTEIEWYPG KCLTQKVLKK KPKKGSKNAK PITKTENCES
FFNFFKPPEV PEDDDDIDED LAEELQNQME QDYDIGSTIR DKIIPHAVSW FTGEAVQGDE FEDLEDDEDE DDDEEDEDED
EDEDDDDDEE EEEDSKTKKK KSGRAQIGDG QQGERPPECK QQ*