GBrowse Details

Vigan.02G294400.01

Basic Information:
Name: Vigan.02G294400.01
Multiple alignment
Variant Information
Position: Chr02:40841375..40843792 (+ strand)
Length: 2418
Functional Information:
Description: Similar to Uncharacterized protein. [I1MHM0, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L18, bacterial-type (IPR004389)
Ribosomal protein L18/L5 (IPR005484)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.45,9.79,42.29,126.80,15.93,72.47,9.33,27.49
Arabidopsis thaliana homolog: AT1G48350.1
Automatic updates:
Name: NM_001249876 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 50S ribosomal protein L18, chloroplastic (LOC100306308), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:40841375..40841493 (+ strand)
Length: 119
Type: five_prime_UTR
Position: Chr02:40841494..40841670 (+ strand)
Length: 177
Type: CDS
Position: Chr02:40841741..40841902 (+ strand)
Length: 162
Type: CDS
Position: Chr02:40843376..40843525 (+ strand)
Length: 150
Type: CDS
Position: Chr02:40843526..40843792 (+ strand)
Length: 267
Type: three_prime_UTR

>Vigan.02G294400.01 class=Sequence position=Chr02:40841375..40843792 (+ strand)
AAAAAAACGA AGTAGACGCT TGAAAAGAAA AACGGAGGTG AAGTGAATGT GGCAGAAGGA TAAGGTGACG ATAAACCGGA
GAAACATTGG TGTCTGTCAT CACTGTAAAG TTGGAAACAA TGTTAGCTTC TTCTCTTTCC TTCCTTCATT CCTGCGGATT
CCCTTCTTCC GCTTCTTCTT CTTCCTCTTC CTTATCCACA CTATCACAAT CAAACCCCAA ACCTTTCGTG GTTGAAGCCA
AAGTTAGGAC CCGAAGGGAA GACAGAACTG CGCGTCACAC TCGCATCAGA AAGAAGGTTC ATTCACTCGC TCACTTTCCC
CGGTTTCGGC TTTCATTCTC TAAAGTTGAA GCCTTTTCTT TGTCAGGTTG AAGGGACACC CGAGAGGCCG AGGTTGTCGG
TGTTCCGATC CAACAAGCAC CTCTCTGTGC AGGTGATTGA TGATTCCTCG ATGCACACGC TTGCTTCGGC TTCCACAATG
CAGAAGACCT TTGCTGAAGA GTTTAATTAC TCAGCTGGCC CCACAGTTGT GAGTTCTTTT GATTGTGTGT TACATGCTGT
TTTGATTTTG TTGCTACCTA ATGTGTTCGG CATTGGCTAG GAAATTAATA AATTTCCCAT TTTCGTATTG AAAGACTGTG
GTTTTATTAC CTTCCAAACT TTTACTCTGA CATGTCCAAT GGACTTGAAC ATTAAGGTAG GTCACTCTTG CCCCTTAGGA
ACAATACCTC GAATACGATG ACCCAAATGG TATCCAAATT GCTAATTTTT TGTTTCTGCC CTTGACTTTG AAAACGCCCT
TTTTTGTCTC TGCATTTTTA ACATACCGGA ACTTTCATCC TTTTGTATAA CTATGATATG TTGCTGTAGA ATTACTTCTT
GATATGTGTC TAACTGGGGG AGTGGGATAG AATCCGTGTG TTTCATGGCT AGGGTGTTTA TTAGAATGAT TGCATAGTAA
CTGTCTAGTA ACTTAAAGGG ATTAGCCTGA GTGATGAAAA TTTTGGTATT AAGAAAATGC AAGAATGAAA AGTGGCGATT
TTAAATGTTT TGGAGGCAAA AAACAGTTAT TGTGTTGTGG TACTTGATGA TATGTCTAAC AGGGGGAGGG GTCAAAATTC
TTGTGTTTCA TAGTATGCTG TTAGAAATAT TACGAAGTAA CTGTCTATTA ACTTAAAATT GAGTTATGTA CGTTTGGGTA
TTTACAATTG CAAGAATGAT GTATTACAAT TGACTTCATG TTGTCATAAG TCATTGCCGT TGTCGTTAAT TTTCTTTCTC
TCTGTTTATT AATAAACTGG ATAGAATGCC TTTTAATGTT AGCTACAAGA TCTTTTCCTG GATATAAATT CCAAGTGTCA
TATTGTAGAA ACTGTACCAT TAAAAAATAC CACGTAAGGA CCCCAACTTC ATTGTGTGAA CATATTCCTG AAGATTTTTC
TCTTGCCAAT TGATTACGGA TACTAAGGGA AACAAAAATC ACATGAAGAA GAAGGAATCC TTGGGTTCTT GAGTATAAGT
ATGCATGTGT CCTTTGTAGT AATCATTGTA AGTCAGCTAC ATCAGTTGCA GTTGAATGTT CTATTGTCAA TCTTTGCATT
GGTTTGGTAA TGAGTTTCTG GAAATGGATT CTTGCATAAG TTACCTCTGA ATCTCTGATG ACTATGTACT TTCTCCATGC
CATTTTAATT GCTTTGTTTT TATTTGGTTC ACAACATTCT ATATAACTAT AGAAGAAAGA AACAATTTGC ATCTATAAGT
TCATCTCCAG TTTCGTGGTG ATACTAACAC ATTACTTTTA ACTGACCATC AGGTACATAT TGTTTCATTA TTTTTCTCAG
ATTTTTTAAT GTATATACTA AAACCATGAT GCAAAATGTC AAGCCCAAGC TTCTACCCAA CAGTGGGTTT TTCATGGTTT
CCTCAGAAGA AGAATACTCC TGTAACTCCA TAAGCTGTGT ACTGCATGAT GGTCCTGACC CTTTGAATTT TTTGGTTTCA
GGAAGTAGCA AAAAGGATGG GTGAGATCAT TGCAAAGTCC TGTTTGGAGA AGGGGATCAC TAAGGTAGCC TTTGATCGAG
GGGGATACCC ATACCATGGC CGTGTTCAAG CACTTGCTGA AGCAGCTCGT GAACATGGCC TAGATTTCTA AATGAAGTAG
TCCCTGTCCT TTGTATTTCC TGTTTCAAAT TGTAACCGGA GGTTTCAACA ATTCTTTATA ATGACATTTT CCTCATTTCC
AGCTACTTAG ATATGATCAC AATGGCTCTT ATTCATTCAT CAGTTTCTTT TTACTTGAAG ACTGTTACAT CTAGTCATAA
ATGTTGATAA TGATTATATA GTGTTCAACT CTTACAAGCA TAAAAGTTTT GGACATGTGA TATTTAGAAG CTGACAGAAA
GCAGCAATCT ATTTATAA

>Vigan.02G294400.01
AAAAAAACGA AGTAGACGCT TGAAAAGAAA AACGGAGGTG AAGTGAATGT GGCAGAAGGA TAAGGTGACG ATAAACCGGA
GAAACATTGG TGTCTGTCAT CACTGTAAAG TTGGAAACAA TGTTAGCTTC TTCTCTTTCC TTCCTTCATT CCTGCGGATT
CCCTTCTTCC GCTTCTTCTT CTTCCTCTTC CTTATCCACA CTATCACAAT CAAACCCCAA ACCTTTCGTG GTTGAAGCCA
AAGTTAGGAC CCGAAGGGAA GACAGAACTG CGCGTCACAC TCGCATCAGA AAGAAGGTTG AAGGGACACC CGAGAGGCCG
AGGTTGTCGG TGTTCCGATC CAACAAGCAC CTCTCTGTGC AGGTGATTGA TGATTCCTCG ATGCACACGC TTGCTTCGGC
TTCCACAATG CAGAAGACCT TTGCTGAAGA GTTTAATTAC TCAGCTGGCC CCACAGTTGA AGTAGCAAAA AGGATGGGTG
AGATCATTGC AAAGTCCTGT TTGGAGAAGG GGATCACTAA GGTAGCCTTT GATCGAGGGG GATACCCATA CCATGGCCGT
GTTCAAGCAC TTGCTGAAGC AGCTCGTGAA CATGGCCTAG ATTTCTAAAT GAAGTAGTCC CTGTCCTTTG TATTTCCTGT
TTCAAATTGT AACCGGAGGT TTCAACAATT CTTTATAATG ACATTTTCCT CATTTCCAGC TACTTAGATA TGATCACAAT
GGCTCTTATT CATTCATCAG TTTCTTTTTA CTTGAAGACT GTTACATCTA GTCATAAATG TTGATAATGA TTATATAGTG
TTCAACTCTT ACAAGCATAA AAGTTTTGGA CATGTGATAT TTAGAAGCTG ACAGAAAGCA GCAATCTATT TATAA

>Vigan.02G294400.01
ATGTTAGCTT CTTCTCTTTC CTTCCTTCAT TCCTGCGGAT TCCCTTCTTC CGCTTCTTCT TCTTCCTCTT CCTTATCCAC
ACTATCACAA TCAAACCCCA AACCTTTCGT GGTTGAAGCC AAAGTTAGGA CCCGAAGGGA AGACAGAACT GCGCGTCACA
CTCGCATCAG AAAGAAGGTT GAAGGGACAC CCGAGAGGCC GAGGTTGTCG GTGTTCCGAT CCAACAAGCA CCTCTCTGTG
CAGGTGATTG ATGATTCCTC GATGCACACG CTTGCTTCGG CTTCCACAAT GCAGAAGACC TTTGCTGAAG AGTTTAATTA
CTCAGCTGGC CCCACAGTTG AAGTAGCAAA AAGGATGGGT GAGATCATTG CAAAGTCCTG TTTGGAGAAG GGGATCACTA
AGGTAGCCTT TGATCGAGGG GGATACCCAT ACCATGGCCG TGTTCAAGCA CTTGCTGAAG CAGCTCGTGA ACATGGCCTA
GATTTCTAA

>Vigan.02G294400.01
MLASSLSFLH SCGFPSSASS SSSSLSTLSQ SNPKPFVVEA KVRTRREDRT ARHTRIRKKV EGTPERPRLS VFRSNKHLSV
QVIDDSSMHT LASASTMQKT FAEEFNYSAG PTVEVAKRMG EIIAKSCLEK GITKVAFDRG GYPYHGRVQA LAEAAREHGL
DF*