GBrowse Details

Vigan.02G281600.01

Basic Information:
Name: Vigan.02G281600.01
Multiple alignment
Variant Information
Position: Chr02:39183504..39185659 (- strand)
Length: 2156
Functional Information:
Description: Similar to Uncharacterized protein. [I1MI02, Glycine max]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755)
InterPro: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain (IPR002130)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:14.28,5.32,6.80,29.37,7.26,6.46,4.12,5.43
Arabidopsis thaliana homolog: AT5G35100.1
Automatic updates:
Name: NM_001357218 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase GmCYP55 (GMCYP55), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:39183504..39183762 (- strand)
Length: 259
Type: three_prime_UTR
Position: Chr02:39183763..39183971 (- strand)
Length: 209
Type: CDS
Position: Chr02:39184879..39185539 (- strand)
Length: 661
Type: CDS
Position: Chr02:39185540..39185659 (- strand)
Length: 120
Type: five_prime_UTR

>Vigan.02G281600.01 class=Sequence position=Chr02:39183504..39185659 (- strand)
ATTAGTTGGC AATTTCCTAC GTTGTTATTG TTCGCATTAT CTTTTAGTCA ATCCAAGGTG GACCCCACAG AGAGCCCTGC
AAGTTCTCCA TCCCACGCCC AAACCCAACA ATGAACCTCG ATGGCCTACT CTCTCCCACC ACCACCGCCA CCACCGCCCT
CTCTCCCTCT CCACAACCAC TTCACACGGC GCTCCCTCCT CCTCCTCTCC ACCACAACCA CCACGACGAC CACCCTTTCC
CTCCCCTCCA CGCCTCCTCC CACCCCGACC GTCACCGATC GCGTCTTCAT GGATTTCAGC CTCTGCCCCA ACAACTTCCT
CCCCGACCGC GCCAACACCC TCTCCCCCAT CTGCTCCGAT TCCACGCTAT TGGGCCGCGT TGTCTTGGGC CTCTTCGGTA
ATCTCGTTCC CCTAACCGTC TCAAATTTTA AGTCAGTGTG CCTCGGCTCA AACGCCACGT CATCTTCTTA CAAGAACACG
CTCGTCCACA AGGTTTTTCC CGGCCAGTAC CTCCTCGCTG GCCGCCAGGG TCGGCCCGAC AAGGGTGAGG TCCGCCCGCC
GCGCGACCTG CCGCGCAACA CCGAGACCGT CGACGCCAAG GCCTTCGCGC TCACCCATTC CCGACCCGGC GTCGTTTCAC
TCTCGCTCTC CGAAAACGAC GACGACGACG ATGTTAAGCT CGATCCTGAG TACCGGAATG TTGAGTTCTT GATCACCACT
GGACCCGGAC CTTGCCCCCA GCTGGATAGC AAGAACATTG TCTTCGGAAC AGTTCTCGAA GGTAAAGCTA ATGATAATGT
TAGTTTGTTT AATCAAGATA CTGAAGTTTG GCAATAGGAT AATTTCTTGA AGCTTTGTAT CTGCTTTAGA GAGGATCTTC
AATTTAATTC TCTAAAGTGC CTGACTTTAA AAATTTATAA CAATTAGTAC AGGCATTGAT TCGAGCTCAA TTCCAAAACT
GAAATCTAAA GATGTAATAA TGGCGAGAGA ACTAAAATTT AGAAAATGAT GACTTATAAT TCCAATATAG GAAACTTGTA
TATGACTTCT GTTAGTGTTT TACTTATTTT TTAAAAGACA TCTATCACAT TTTACTATTA ATTATGAATG TTATTAATTT
TGAGTAATTT ATATTATTTC TGAGAATTTG TGTATGTAAA TATTTGTTTG AAAATCATTG GAAGCATCTA TTATGACAAA
GCCTATTATA TTTGCAATTC TTTATGGTTG AGTGAAAAGT GATGGTAGTG TGAAGAACAC AGAGAAACTC CACGACCACG
GCATTACTCT AATGGTATGT TGGGACTGTT AGTAAAGGCC TGTTCAGAGA ATTATTGTTT AGGACTACAC CGAAGATTTT
ATCGACTCGT ATCTACTCAT CTTGTTCCTA TATATCAAGA GATTTTCCTG AGGAGAGTAA CCTATCTATT ATGCTACACA
AAGCGTTTGA TTGGGTACAG AGTATATGCT TAGTAACTAA CAAAAAAAGA TTAATGTCTT GTACCTTCAA GTGCTAATAT
TGAATTTTGA GTTACACTTG ACCATATTGT GTTTTAAACT ATTGTTCTGA TGACAGAAAT CAGTTGGGGA AATGTTGAAA
TATTTTACCT CTTTGGGTAC TACATTATAC GAATTTTGAT TTATCTGTCA CCAATGAAGT GCTGAGCATT TAAATGAATC
TATTGCAGGA TTGGATGTCA TCACAGCCAT AGCTTCCATT CCTACCTACC AACCATCTGA GAGAATTCGC CAGTTTAATG
ACTTGGCTGA ATTTTTCGGA GATGGAAGGG CTCAGAATGC ACGCAACATA TGGAACAGGC CTCTTACGAC TGTTTATATC
AGTGACTGTG GAGAACTCAA AGTGACAAAG CCTTCCCTCA CGCCTTCTTT ACCATAATTT ATTTCTATGA ATGTATATTT
ATTGTTTATT CCAGCGGATT TCATGTAACT GGTGTATGTA AAATCGTACT CACATTCTTT AAATAATGAT GAAGAAAACC
TCAAGTGAAC AACATGAATG TCTTCAAAGT TGAAACCTGA AAGGTTTTAG TTAAGTTCAT TCATTTCAAA GCTTCGGTGA
ACATGATACA TACGGGCAAT GAAGTTAAAC GCTGATTGTT TCTTGAGTTA GTAATTCATC ATTCTTACTG TCCAAA

>Vigan.02G281600.01
ATTAGTTGGC AATTTCCTAC GTTGTTATTG TTCGCATTAT CTTTTAGTCA ATCCAAGGTG GACCCCACAG AGAGCCCTGC
AAGTTCTCCA TCCCACGCCC AAACCCAACA ATGAACCTCG ATGGCCTACT CTCTCCCACC ACCACCGCCA CCACCGCCCT
CTCTCCCTCT CCACAACCAC TTCACACGGC GCTCCCTCCT CCTCCTCTCC ACCACAACCA CCACGACGAC CACCCTTTCC
CTCCCCTCCA CGCCTCCTCC CACCCCGACC GTCACCGATC GCGTCTTCAT GGATTTCAGC CTCTGCCCCA ACAACTTCCT
CCCCGACCGC GCCAACACCC TCTCCCCCAT CTGCTCCGAT TCCACGCTAT TGGGCCGCGT TGTCTTGGGC CTCTTCGGTA
ATCTCGTTCC CCTAACCGTC TCAAATTTTA AGTCAGTGTG CCTCGGCTCA AACGCCACGT CATCTTCTTA CAAGAACACG
CTCGTCCACA AGGTTTTTCC CGGCCAGTAC CTCCTCGCTG GCCGCCAGGG TCGGCCCGAC AAGGGTGAGG TCCGCCCGCC
GCGCGACCTG CCGCGCAACA CCGAGACCGT CGACGCCAAG GCCTTCGCGC TCACCCATTC CCGACCCGGC GTCGTTTCAC
TCTCGCTCTC CGAAAACGAC GACGACGACG ATGTTAAGCT CGATCCTGAG TACCGGAATG TTGAGTTCTT GATCACCACT
GGACCCGGAC CTTGCCCCCA GCTGGATAGC AAGAACATTG TCTTCGGAAC AGTTCTCGAA GGATTGGATG TCATCACAGC
CATAGCTTCC ATTCCTACCT ACCAACCATC TGAGAGAATT CGCCAGTTTA ATGACTTGGC TGAATTTTTC GGAGATGGAA
GGGCTCAGAA TGCACGCAAC ATATGGAACA GGCCTCTTAC GACTGTTTAT ATCAGTGACT GTGGAGAACT CAAAGTGACA
AAGCCTTCCC TCACGCCTTC TTTACCATAA TTTATTTCTA TGAATGTATA TTTATTGTTT ATTCCAGCGG ATTTCATGTA
ACTGGTGTAT GTAAAATCGT ACTCACATTC TTTAAATAAT GATGAAGAAA ACCTCAAGTG AACAACATGA ATGTCTTCAA
AGTTGAAACC TGAAAGGTTT TAGTTAAGTT CATTCATTTC AAAGCTTCGG TGAACATGAT ACATACGGGC AATGAAGTTA
AACGCTGATT GTTTCTTGAG TTAGTAATTC ATCATTCTTA CTGTCCAAA

>Vigan.02G281600.01
ATGGCCTACT CTCTCCCACC ACCACCGCCA CCACCGCCCT CTCTCCCTCT CCACAACCAC TTCACACGGC GCTCCCTCCT
CCTCCTCTCC ACCACAACCA CCACGACGAC CACCCTTTCC CTCCCCTCCA CGCCTCCTCC CACCCCGACC GTCACCGATC
GCGTCTTCAT GGATTTCAGC CTCTGCCCCA ACAACTTCCT CCCCGACCGC GCCAACACCC TCTCCCCCAT CTGCTCCGAT
TCCACGCTAT TGGGCCGCGT TGTCTTGGGC CTCTTCGGTA ATCTCGTTCC CCTAACCGTC TCAAATTTTA AGTCAGTGTG
CCTCGGCTCA AACGCCACGT CATCTTCTTA CAAGAACACG CTCGTCCACA AGGTTTTTCC CGGCCAGTAC CTCCTCGCTG
GCCGCCAGGG TCGGCCCGAC AAGGGTGAGG TCCGCCCGCC GCGCGACCTG CCGCGCAACA CCGAGACCGT CGACGCCAAG
GCCTTCGCGC TCACCCATTC CCGACCCGGC GTCGTTTCAC TCTCGCTCTC CGAAAACGAC GACGACGACG ATGTTAAGCT
CGATCCTGAG TACCGGAATG TTGAGTTCTT GATCACCACT GGACCCGGAC CTTGCCCCCA GCTGGATAGC AAGAACATTG
TCTTCGGAAC AGTTCTCGAA GGATTGGATG TCATCACAGC CATAGCTTCC ATTCCTACCT ACCAACCATC TGAGAGAATT
CGCCAGTTTA ATGACTTGGC TGAATTTTTC GGAGATGGAA GGGCTCAGAA TGCACGCAAC ATATGGAACA GGCCTCTTAC
GACTGTTTAT ATCAGTGACT GTGGAGAACT CAAAGTGACA AAGCCTTCCC TCACGCCTTC TTTACCATAA 

>Vigan.02G281600.01
MAYSLPPPPP PPPSLPLHNH FTRRSLLLLS TTTTTTTTLS LPSTPPPTPT VTDRVFMDFS LCPNNFLPDR ANTLSPICSD
STLLGRVVLG LFGNLVPLTV SNFKSVCLGS NATSSSYKNT LVHKVFPGQY LLAGRQGRPD KGEVRPPRDL PRNTETVDAK
AFALTHSRPG VVSLSLSEND DDDDVKLDPE YRNVEFLITT GPGPCPQLDS KNIVFGTVLE GLDVITAIAS IPTYQPSERI
RQFNDLAEFF GDGRAQNARN IWNRPLTTVY ISDCGELKVT KPSLTPSLP*