GBrowse Details

Vigan.02G270300.01

Basic Information:
Name: Vigan.02G270300.01
Multiple alignment
Variant Information
Position: Chr02:37802873..37805577 (- strand)
Length: 2705
Functional Information:
Description: Similar to Histone H2A. [C6SZ77, Glycine max]
GO: Biological Process: nucleosome assembly (GO:0006334)
Cellular Component: nucleosome (GO:0000786)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: protein heterodimerization activity (GO:0046982)
InterPro: Histone H2A (IPR002119)
Histone core (IPR007125)
Histone-fold (IPR009072)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:105.99,63.41,56.36,48.37,66.43,148.11,47.09,45.70
Arabidopsis thaliana homolog: AT1G52740.1
Automatic updates:
Name: NM_001248471 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499998 (LOC100499998), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250125 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500629 (LOC100500629), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250362 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500133 (LOC100500133), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250417 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499881 (LOC100499881), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:37802873..37803739 (- strand)
Length: 867
Type: three_prime_UTR
Position: Chr02:37803740..37804036 (- strand)
Length: 297
Type: CDS
Position: Chr02:37805296..37805403 (- strand)
Length: 108
Type: CDS
Position: Chr02:37805404..37805577 (- strand)
Length: 174
Type: five_prime_UTR

>Vigan.02G270300.01 class=Sequence position=Chr02:37802873..37805577 (- strand)
AAAAAATAAA TAAATAAAGA AGCGTGGTAG GAAGGACCAA GAAACAACCT CAAATCCCTT TCCTCTGTCC ATTAGAGATT
ACCTTCATCG GAGTCTGAGA CCTGCCTTCA TCTTCTCTCT CTATCTTTCT CTCTCCTCTC AGCGCAACAC CTCGTACTGT
TTTGGCGGTA AAAGATGTCG GGGAAAGGGG CGAAGGGGTT GATCACCGGC AAAACCTCTG CCGCCAACAA AGATAAGGAC
AAAAAGAAGC CGATTTCACG TTCTTCTCGT GCCGGCCTTC AGGTTCTCAG ATCTCCCTTC CTTTCTCATT CCTTTACCTC
TTCCGATTCC CTCGTAGCCC TACAAAATCT CCACGCACTC ATTCTGTAAA TTCTTTTCTT TTCTTAACCC TCGTTATTGG
GGTAACGCAA TGTGAGCCAT TTGTTGTCGG GTCTCGTAGA TGTTAGCTGT GCTTTTCCCG TAGGATAATT TCACCAGCGG
GTGAGGAAGA AAAAAAAATC AAATGTTGGT GTTTTTTTTT CTTTGAAAGT TTTTATTTTT CTTTTTCTTT TTTCTTTAGT
TATCTGGAAG GTTTAATGCG AGTGTACTAA GTTAGTGAGT TTGATTGCAG CGTACTCGTT CATGACCACA TGTTGGAGAC
TTTAACCTCG CTTTAGAATA GGGTTTTGCC ATATGCTGTA CCCGATGTTG TGCCACTAGA ATGAAAATGT TTTATATTTT
TTTATCTGTA TTGTTAGAGT GATTTCGTCA TCGAACAGTA TTACTCTTCA TTTCTCTTGA ATGTCAAACT TTTAATGCAT
TTAAATTTTG GCGGTGTGAT TAAGTCGGGA ATATACCTCT ATGTTGTTAT TTTGACATTT TAGTCAGTGT TGAGTCTATG
TAAATTTTGA CTGACTTTTG CTATGTAAAC ACTTGGATTG TTATTTTAAA TATGTTGGAG CTGCATCGAC ATGTAAACGC
GTTTATTGCG GCCCATAAGA CAACTAGAGT CCAGTTAGAC CTGAAAATTT CTACTGTTGA TGTTTAGATG TAGGTCGCAA
TATTGTTTAA TCAAAGTTAT CCAGAGTCAG ATAATTTTGC TTACACATTA GTTTGTTTTG TTTATTTTCC ATTTTCAATC
ATTGTTTGTT ATTACAAATG CTTCTAACAT TGCCGGCATG GTTCTGAATT GCTACAACCA AAATTTCATA TGTTTAGGGA
GATTTACCTG GCTATATATT TGGTTTCTCG TCTGTGATTG AGGACACTGT CTTAGGTGTG ACCCTTTGAT TTAGAAATTG
AAATCAGTCC CTTCTTCGTA GCTAGTAGAT TGAAGCATGT TAAGTAGGGT CATTTCTCGA AAAGTTTCAT AATCACCTTC
TGTTTTAATG TGATATGAGT TTTTTACTAT AATCTCACCA ACATCTTTTG GCCAAATCAT TGTATTTTGA TTCACAGAAT
ATGCTAGCGT ATAGTTTGTG GGAACTATTG ATACATTGGG CTAAGGAGTA GCAAGCTGGT ATGTTGTCTT ACGTGAGCTT
TTTGTATATT GTAATTTGCA GTTTCCAGTT GGTCGTATCC ACCGGCTATT GAAGTCTAGG ACAACCGCTA ATGGTAGAGT
TGGGGCTACA GCTGCTGTTT ACTCTGCAGC AATCTTGGAG TATCTCACTG CTGAAGTATT GGAGCTGGCA GGAAATGCTA
GCAAGGATCT CAAGGTCAAA CGTATCACTC CCCGGCATTT ACAGCTAGCC ATTCGTGGGG ATGAAGAGCT GGATACCCTG
ATAAAAGGAA CGATTGCTGG AGGAGGAGTG ATTCCTCACA TTCACAAGTC TCTTATCAAC AAGTCTTCTA AGGAGTAGAT
CCCTAGTGCA TAATAGCTGC TTCATGTGAA ATTTCTCTCT ACTAATTGTG TATTTGTTGC ATGCACTTGA TAAATCAGTA
GGACCTTCTA TTTAAGACTG AGTTGCTGTT GTTGATCATG GAGATAATGT TTAGTCTTTC TCTTCATCAA TTTAGTATGT
CTCAATCACT TCAAATCTTA ATTGAGGATA ATCCGGTCTG ATAATTTGAG TTATTGTTAC TCTACTAATT GTGCATTTGT
TGCATGAACA TGAAAAAAGG ACCTTCTATA TAAGACTTTG TTGCTGTTGT TGGTCGTGGA GGTAGTCTTC GTTTTTCTGT
TTATCAATTT AGTATGTCAC TAATCACTAT CACTGAAAAT CTTAATTGAG GATAATTCAG TATGATGATT TGAAATATTG
TTACATTCAA CCTGTGTTTA GCATTGCATC TTATAATACT TGTATCTGAT GTCCATCCCA ACCATGCTAG TAGGCTTGTG
GATGTTAAGG TTGTTTATCT CAATTTGGTC TCCTGGTATT TGGGTTGGCA TAAAGGATTA AACTTATTGA AATAGTTTTG
GTAAGCAACA TCATTATGGC AATGGTAGTA ATCATAGTAT TGTAGTGATG GCTGTTGGCA TGTCGTCTAT GATTGTGACA
TGTTATGTGG CTATATGGGA CTGCTTTTGT TGATATATCA GGCTAACAGC GTAGCAGTGC AGCAATCAAG GAGTTGTGAT
ATGGTACTTT TTTAGATGCG GGAGTGTTGT CATAATTCTA TATGATGGTT TGGATAATGG TTAGATTCAA CCAGAGATCT
ATTTTTTTAT TTGAAATTTG TGATGCAATT TTAGTGGATG CTGCAAGAAC TGTCGCAGAA GCAGA

>Vigan.02G270300.01
AAAAAATAAA TAAATAAAGA AGCGTGGTAG GAAGGACCAA GAAACAACCT CAAATCCCTT TCCTCTGTCC ATTAGAGATT
ACCTTCATCG GAGTCTGAGA CCTGCCTTCA TCTTCTCTCT CTATCTTTCT CTCTCCTCTC AGCGCAACAC CTCGTACTGT
TTTGGCGGTA AAAGATGTCG GGGAAAGGGG CGAAGGGGTT GATCACCGGC AAAACCTCTG CCGCCAACAA AGATAAGGAC
AAAAAGAAGC CGATTTCACG TTCTTCTCGT GCCGGCCTTC AGTTTCCAGT TGGTCGTATC CACCGGCTAT TGAAGTCTAG
GACAACCGCT AATGGTAGAG TTGGGGCTAC AGCTGCTGTT TACTCTGCAG CAATCTTGGA GTATCTCACT GCTGAAGTAT
TGGAGCTGGC AGGAAATGCT AGCAAGGATC TCAAGGTCAA ACGTATCACT CCCCGGCATT TACAGCTAGC CATTCGTGGG
GATGAAGAGC TGGATACCCT GATAAAAGGA ACGATTGCTG GAGGAGGAGT GATTCCTCAC ATTCACAAGT CTCTTATCAA
CAAGTCTTCT AAGGAGTAGA TCCCTAGTGC ATAATAGCTG CTTCATGTGA AATTTCTCTC TACTAATTGT GTATTTGTTG
CATGCACTTG ATAAATCAGT AGGACCTTCT ATTTAAGACT GAGTTGCTGT TGTTGATCAT GGAGATAATG TTTAGTCTTT
CTCTTCATCA ATTTAGTATG TCTCAATCAC TTCAAATCTT AATTGAGGAT AATCCGGTCT GATAATTTGA GTTATTGTTA
CTCTACTAAT TGTGCATTTG TTGCATGAAC ATGAAAAAAG GACCTTCTAT ATAAGACTTT GTTGCTGTTG TTGGTCGTGG
AGGTAGTCTT CGTTTTTCTG TTTATCAATT TAGTATGTCA CTAATCACTA TCACTGAAAA TCTTAATTGA GGATAATTCA
GTATGATGAT TTGAAATATT GTTACATTCA ACCTGTGTTT AGCATTGCAT CTTATAATAC TTGTATCTGA TGTCCATCCC
AACCATGCTA GTAGGCTTGT GGATGTTAAG GTTGTTTATC TCAATTTGGT CTCCTGGTAT TTGGGTTGGC ATAAAGGATT
AAACTTATTG AAATAGTTTT GGTAAGCAAC ATCATTATGG CAATGGTAGT AATCATAGTA TTGTAGTGAT GGCTGTTGGC
ATGTCGTCTA TGATTGTGAC ATGTTATGTG GCTATATGGG ACTGCTTTTG TTGATATATC AGGCTAACAG CGTAGCAGTG
CAGCAATCAA GGAGTTGTGA TATGGTACTT TTTTAGATGC GGGAGTGTTG TCATAATTCT ATATGATGGT TTGGATAATG
GTTAGATTCA ACCAGAGATC TATTTTTTTA TTTGAAATTT GTGATGCAAT TTTAGTGGAT GCTGCAAGAA CTGTCGCAGA
AGCAGA

>Vigan.02G270300.01
ATGTCGGGGA AAGGGGCGAA GGGGTTGATC ACCGGCAAAA CCTCTGCCGC CAACAAAGAT AAGGACAAAA AGAAGCCGAT
TTCACGTTCT TCTCGTGCCG GCCTTCAGTT TCCAGTTGGT CGTATCCACC GGCTATTGAA GTCTAGGACA ACCGCTAATG
GTAGAGTTGG GGCTACAGCT GCTGTTTACT CTGCAGCAAT CTTGGAGTAT CTCACTGCTG AAGTATTGGA GCTGGCAGGA
AATGCTAGCA AGGATCTCAA GGTCAAACGT ATCACTCCCC GGCATTTACA GCTAGCCATT CGTGGGGATG AAGAGCTGGA
TACCCTGATA AAAGGAACGA TTGCTGGAGG AGGAGTGATT CCTCACATTC ACAAGTCTCT TATCAACAAG TCTTCTAAGG
AGTAG

>Vigan.02G270300.01
MSGKGAKGLI TGKTSAANKD KDKKKPISRS SRAGLQFPVG RIHRLLKSRT TANGRVGATA AVYSAAILEY LTAEVLELAG
NASKDLKVKR ITPRHLQLAI RGDEELDTLI KGTIAGGGVI PHIHKSLINK SSKE*