GBrowse Details

Vigan.02G262500.01

Basic Information:
Name: Vigan.02G262500.01
Multiple alignment
Variant Information
Position: Chr02:36866662..36870456 (+ strand)
Length: 3795
Functional Information:
Description: Similar to protein Asterix-like. [XP_004514029.1, Cicer arietinum]
InterPro: Uncharacterised protein family UPF0139 (IPR005351)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:52.34,44.22,53.54,38.14,98.74,110.72,93.10,49.74
Arabidopsis thaliana homolog: AT5G07960.1
Automatic updates:
Name: NM_001248341 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500245 (LOC100500245), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:36866662..36866715 (+ strand)
Length: 54
Type: five_prime_UTR
Position: Chr02:36866716..36866856 (+ strand)
Length: 141
Type: CDS
Position: Chr02:36866955..36867055 (+ strand)
Length: 101
Type: CDS
Position: Chr02:36870189..36870252 (+ strand)
Length: 64
Type: CDS
Position: Chr02:36870253..36870456 (+ strand)
Length: 204
Type: three_prime_UTR

>Vigan.02G262500.01 class=Sequence position=Chr02:36866662..36870456 (+ strand)
TTACTGAGAA ACTCGTCAAC ACCTGTCTCT GGCTTTCGAA GAGAGAAATC GGAGATGTCA TCGCACACTA ACGATCCCCG
TCAGCCATCG GCGGCGAGAC CCTACGTGGC ACCGCAGATT GCACCGCAGG ACCTGCCGAT CGATTACGCC GGATTCATCG
CCGTCATATT TGGCGTCGGC GGCGTTATGT TTAGGGTTTG TATTTGAAGC ACCTCTTCGC CATCGATCTC ACTGCAGAAT
TTTCGTTTCG ATGCGTTAAC ACTTTTTTCT TATTGTGTTA TTTGTGAAAT CAGTACAAAC TGAGCTCCTG GCTGGCACTC
ATATTCTGCG CGCAATCCGT AGCGAACATG CGGAATGTCG AGAACGATCT CAAACAAGTT ATGATGGCTA TGATGTGAGT
TTCTTCGTTT TCCTCTATTT GAATTCCCGT TTTCTTTTAT TTTAAGTGAT TTGTTCGTGG ATCTGATTGT GTGAGCTGTT
CTTTTAAAAT AGAAGCATAG CAAAAGGTTG AATAAATGTT CTTGGATTTG GGAGGTAGTG TATTTTCCAC CGTTTCATAT
TTTTTTTTTC AAGTTTCTGA ATTACATATA GACTTAGGGC TCGAAATAAT AGGTACATGC GTTCTTAAGG GTACGGAATC
AGGAAAAAAA TGTAGGCAAA ATCAACGAAG TCAGATTTGG AGGCTTAGGG CGTGATGAAT AGGAAATTGA AATCGGCAGT
AAGGATCTTT CCCTTCCTTT TTTTGGAAGT TAGTATTCTT TTACTCATTT GTTCCAGAAG TGTCAGTAGT ATAATCGAAT
GAAACTTTTA TTTTTATAAG GTTCAGTGTC GATTATCCTT GAAGACAGGA ACCTGCTAAA TAGATGACAC TCAATATTAG
CCTTTGTTAG GGATTGGATC ATAATGAGAG GATTGATGTT TAATGTAGAA TTCTAAATGT TCGACAAGCT AATTGATTAC
ATTAATCTGG CCTCTGATAT CTGAACCGTT CGCTTGATGA CATTAATTTG TCAGCGTTTA TTCGTCTCAC CAATCCATCT
ACTTCTAAAA TAAAACTAAA AGGACGGATC ACCATGGATA GTGAACCACC AACCATCCCA CATGCTTTAT AATCCATTGG
ATCAGCATGA GATATTCCAA AATTCATTGG TTGGACATAG AGAGAATGAG TCTGAGACTC AAAGGCTATT TGGGAGTAAG
AATGTGTATA AATATCGAAC ATTATTTTCA AAAAATATTT TAAAACAATA AAATACAACA TAGTTTTTCT TTTTTTTATC
AAACGAGTCA TGGATGATGA ATTGCATTTT TCTTTTTTCA TTTTACTGAT TACAAATTTT AGATGTTTTA ATTATGTATG
TTTTACAATG CATTTCAATT CAATTCAAAA TGCATCTTAA TAAAATGTTT GGGTGTTTTA TAGAGAAGGA GAAGAATCGC
TCATAATGGA ATAGAACATG TTGATCTATT GTTTGGTTGC TTATTTTTTT TTGTCAAGGA ACGGGACTAG GATTTTCTCC
CTTTCCATTC CGCCCCCTTC TGTAACTTAA CTCCACAACT GTGTTTAAGT ATGTTTTCCC TTTCATCCTC TATTGCTCAC
CCTATTTCCA GCTTTCCAAA CATAGCCCTC AACAAACAAC AAGGACACGA CAACCTTATT TCACTAGATA GGTTATATGA
ATAACAGCCT ATTGGGCTTT ATCAAAAAAT CATATTTTCA TGAATTTTAT CCATCATGAG ATCCTATTTC ATAACTTCTT
TCAATGTCAT TTTTGTTTCC CTCTACTCGT TATATACAGA AGACAAGCTT CTGGTTTTTT TCTTTCAATT CTTCAGGGCA
CTCCCAACCT TTTTCATTCA ATAGATTCCT TTTACTGCAG AATTTTTTAC TTTAGTGGAG TATATGCTTT GCCCCAATCA
TAGATTAAGT AAATGTTGAA TCTTGTTCAG TCGAGTAGAT AGGACAGCTA CTTCTCACAG GTGATTCCTT CACCTGAAAT
AGTTATAGGA TTGCTGACCA AATCATTTAA GTGCATCGTA ATCTTGGTCA TTATTTTTAA CTGCTTACTA TGTAGGTATT
CCTATCAAGT AACAATGTTC TTGTGTATGG ATTGTTAAAA AGTAACCAAT ATTATATGTG GTTTGTAACG TCCCTGAAAC
TTTCTGAAGC ATGTTTCAAC TCTTACAAGG TTTTTCTCTT TTGTTCTGCT TGTATCTGTT GTACTGCGTG CAAGTTCTTC
ATGTTCTTAC TATAAACCCT GATGTCTCAA TTATGTAACA TTTAAGGCTT ATACAACTAA AGATTGACTT AAAAAATGGC
TGGCCCTTGA ATTTGTTTCC TAAGTTTGAG ACTTCTCTCA TGACATGCCT AAATACCTAG CAACACAGAA CAGTAGTTAG
AGATGGAGAG CACATGTTTA AGGGGGTATT TGAAGTACAT AGAGATTTTG GACGGAAATG TCGAAGTATA AGACAGGTAA
CTTTACATCT GGATAAATGA GTATATATGG ATAGCGTTTA CTAGTTTTAG GAATGTTTTT CAGAATTCAA ATAATGGGAG
AAAGAATGTC CGGTATAAAG AAGTGGGGAC TGAAAGCCAA TAGTCGGGTA GAAAATTACT TGCATTCCCA TGTCATGGTA
AAACTGCATG TCTTTCCATT ATGACAGGGT TAAAAGTCAA TGAAAACATG AGAATGGTAC TTTTCGAGAA AGAAAAAATG
CCCCAAAGAT GTTGTGAAAA CTCGTTTAAA ATATTGAGGA TGTTGTGTTG TTTGCTTTTT TGGAGAATAG TTTAACATTC
TTTGGAATAA ATGCAACCAT AGAGCTTAGG AAACTGGTAG GATAGTAATG TCATTTTGCT TTTCTTTGGA GCTAGCATTA
GATGGAAGTG TCGTCATAGT TGTGGTTCAT CAATTAGGCT TATAGGTTCA AGTCTCCTTA AAACTCTATG GACAGGAAAT
CCTCTTCAAG ATAGGTCCCG GAAAATAATC TGTAAAATGT TATTGAAAAA TGTTAAATTG TTGTTTACTG AGTTATTTTA
CGTTGACAAA AAACTGCTAA AGTTTGATAA CTTGTTCCCG CACAAAAAAT ACATTGCATA ATAACCTTTT TTGTTCTGTT
TTGATTTTTC ACTGCACACA TAGAATAGAG GCAAAGGTTT TGGATATATA TATTTTATGA TAAGAATTTT GCCTGTAAGA
ATGGTGAATC TAATCTTTTA TACCACCATA CTAATATACT AAACACAACA GTTTGGTTAC TTGCACCTTT TTAGAAGTAT
ATGATTTGGG TATGGCTGAA ATTCTCCAAA GGTTTAACTT GCTTTAGTAT TCTAAAAAGC AAGTGATAGT ATATTAGCAG
TTACATGCAC ACATAGAAAG ACATGTGATT TGCAGCATTT TATTTTTCTT CATTCTTCTG TGGCAACGTG AACATAAAAT
AGTTTGTCCT CAATTTTCAT CTATTATAAA TTTCGACAGG TTTTCCTGAG TTTAAAATTA TTGACTTGAT GTTAATCTGA
ACCTCAGGTT TTCTCTAATG GGATTGATAA CAAACTACTT TGGACCTCCC AGACCCGGCA AACAAAGCTG AAATCTCAAG
ATTTTGAGGT AGAAATACGC CATTTTTTTA AGTGAGGGAA GTTTAAGTTA TTCAGTGTTT CCCTTTTCAT TATGTCGTCT
GTATTAAAGA TGCTTGCCAA GTCTGGATAA TTTGACGTTT TTCTGATTAT ATATTAAAAA GATAGTTTAC TATGGAATCG
AGAGCTACAA CATTTTGCAC ATTTGTTTTT CTAAA

>Vigan.02G262500.01
TTACTGAGAA ACTCGTCAAC ACCTGTCTCT GGCTTTCGAA GAGAGAAATC GGAGATGTCA TCGCACACTA ACGATCCCCG
TCAGCCATCG GCGGCGAGAC CCTACGTGGC ACCGCAGATT GCACCGCAGG ACCTGCCGAT CGATTACGCC GGATTCATCG
CCGTCATATT TGGCGTCGGC GGCGTTATGT TTAGGTACAA ACTGAGCTCC TGGCTGGCAC TCATATTCTG CGCGCAATCC
GTAGCGAACA TGCGGAATGT CGAGAACGAT CTCAAACAAG TTATGATGGC TATGATGTTT TCTCTAATGG GATTGATAAC
AAACTACTTT GGACCTCCCA GACCCGGCAA ACAAAGCTGA AATCTCAAGA TTTTGAGGTA GAAATACGCC ATTTTTTTAA
GTGAGGGAAG TTTAAGTTAT TCAGTGTTTC CCTTTTCATT ATGTCGTCTG TATTAAAGAT GCTTGCCAAG TCTGGATAAT
TTGACGTTTT TCTGATTATA TATTAAAAAG ATAGTTTACT ATGGAATCGA GAGCTACAAC ATTTTGCACA TTTGTTTTTC
TAAA

>Vigan.02G262500.01
ATGTCATCGC ACACTAACGA TCCCCGTCAG CCATCGGCGG CGAGACCCTA CGTGGCACCG CAGATTGCAC CGCAGGACCT
GCCGATCGAT TACGCCGGAT TCATCGCCGT CATATTTGGC GTCGGCGGCG TTATGTTTAG GTACAAACTG AGCTCCTGGC
TGGCACTCAT ATTCTGCGCG CAATCCGTAG CGAACATGCG GAATGTCGAG AACGATCTCA AACAAGTTAT GATGGCTATG
ATGTTTTCTC TAATGGGATT GATAACAAAC TACTTTGGAC CTCCCAGACC CGGCAAACAA AGCTGA

>Vigan.02G262500.01
MSSHTNDPRQ PSAARPYVAP QIAPQDLPID YAGFIAVIFG VGGVMFRYKL SSWLALIFCA QSVANMRNVE NDLKQVMMAM
MFSLMGLITN YFGPPRPGKQ S*