VIGGS:GBrowse

Vigan.02G257700.01

Basic Information:

Name:	Vigan.02G257700.01 Multiple alignment Variant Information
Position:	Chr02:36188357..36190277 (+ strand)
Length:	1921

Functional Information:

Description:	Similar to Uncharacterized protein. [C6TFG0, Glycine max]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: small ribosomal subunit (GO:0015935)
	Molecular Function: RNA binding (GO:0003723)
	Molecular Function: structural constituent of ribosome (GO:0003735)
	Molecular Function: rRNA binding (GO:0019843)
InterPro:	Ribosomal protein S4/S9, N-terminal (IPR001912)
	RNA-binding S4 domain (IPR002942)
	Ribosomal protein S4/S9, eukaryotic/archaeal (IPR005710)
	Ribosomal protein S4, conserved site (IPR018079)
	Ribosomal protein S4/S9 (IPR022801)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:219.88,227.34,128.74,87.33,238.58,222.73,132.24,100.50

Automatic updates:

Name:	NM_001251811 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305663 (LOC100305663), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001289256 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 40S ribosomal protein S9-2-like (LOC100790098), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:36188357..36188439 (+ strand)
Length:	83
Type:	five_prime_UTR

Position:	Chr02:36188440..36188467 (+ strand)
Length:	28
Type:	CDS

Position:	Chr02:36188561..36188942 (+ strand)
Length:	382
Type:	CDS

Position:	Chr02:36189742..36189925 (+ strand)
Length:	184
Type:	CDS

Position:	Chr02:36189926..36190277 (+ strand)
Length:	352
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.02G257700.01 class=Sequence position=Chr02:36188357..36190277 (+ strand)
CAAAGGCAAC AGAAGATCTA GTTTCAGGTT GCAAGAGCAT AGCAGTGGTA GGGAAAACGG CAACCCCTTA GAAGACAAAA
GCCATGGTTC ACGTTTCCTT TTACAGAAAT TGTGAGTAGA TGGATGAACT CTCCCTCAGA ACGCCGTTTT GTGATGTCGG
TCAAGAGTAA CAACAACATT GATCTCTTTT GTTTTGTGTG GCAGATGGGA AGACGTTCAA GAAGCCGCGT CGTCCGTACG
AGAAGGAGCG TCTGGACGCG GAGCTGAAGC TGGTCGGAGA GTACGGGCTA CGGTGCAAGA GGGAGCTGTG GAGGGTGCAG
TACGCCCTCA GCCGCATCCG CAACAACGCG CGTAACCTCC TCACTCTCGA CGAGAAGAAC CCGCGCCGGA TCTTTGAGGG
AGAGGCTCTC CTCCGCCGCA TGTTCCGCTA CGGTCTCCTC GATGAGACCC AGAACAAACT CGATTACGTC CTCGCACTCA
CTGTCGAGAA CTTCCTCGAG CGCCGCCTCC AGACCCTCGT CTTCAAGTCT GGCATGGCCA AGTCCATCCA CCATGCTAGG
GTTCTCATCA AGCAGAGACA CATCAGGTCC CTTTCCGTTT CCAAATTCTC TCTTGTTTTT ATATCGATTG TGTTTCTCGT
TACTTGTTTT GCTCATCACT ACAAATTGTA TCTTTTCAGT ATTGGATTGA ATCTTTTTCC AGAGTTTGCA TTTGTTAAAT
TGTAGGCTTC TTCTGATTAA TTCGAAAATG GATATAAAGA GAAAAATGCA ATGATCTTGA TAATATTTTT TTCTAGTTTT
TTAGTTTCTT ATACTTGAAG GGCTTATGTA GTCGATTAAG TCCCTATCTT GTGAATTAGG TTATATTTGA ATGGATTAAG
TAATTATATT ACAAGGAAAT GAGAAAAATA ATTCATTTTC TTTTGTGAAT TATAATGAGC TTAATTTGCT GCAGAAGTTA
ATTCATTGTA CCTTCTTTTT GAGGTAATAT ATGTGGAGCT AAGTTGCTTT AATAATTGAA GATGAAATAG GGTGAAGTTA
TTTTTGTAAG AGAGCTTTTC CAAATAAGAC CAAAAGCAAC CCGTGACTAT ATTGTGAGCT TTTTTCCGAA CTTTTCTCAA
GCACTTGTAT CAGGTATTTC AAAACCGCCT GTTTAGCTAG AATTTAGAGT TACACTTGTA TAAAGTTTTC AAAGTCCCCG
TTTAGCCAGA ATGGAGAGTT GATGTATCAG CTTTCTGTGC TTTTGAATTT TTGAATTCTT TTAACTTAAA GCAGAATATT
TTGCAATAAC TGAATGTTGA TGTATCAGTC CAATTTGTTT TGTATCTGTA ATACATGCAT TGTTTGGAGA ATGACCTTGT
TATTGTGTCA TTTGGGGTGA GGCAGGGTTG GTAGGCAAGT GGTGAACATC CCATCTTTCT TGGTGAGGGT TGACTCACAG
AAGCACATTG ACTTTTCACT TACAAGTCCC CTGGGTGGAG GACGCCCTGG AAGAGTGAAA AGAAGGAACC AAAGGGCTGC
TGCTAAGAAG GCCGCAGGTG GAGATGGAGA TGAAGAAGAT GAGGATTAGA CTATTAATTA TGTCCATCTC CACTGCATTT
ACCCATTGTG TCACCTTTTA CTTTACGAGC CTAGATTATG GTTTTTGATT GTTATACATT TTCATTCTCG GTTCCTTGTT
TGGGAAAACA TTTTGTTTGA CATATTATGT TTTTTGAAGT TATATATTTT AATGTATCAA GATTTTCATT AAATAATTTT
TCTGACCTTC ATATAGAACA TCACAATCAT ATGTAGTTAT AGGAATATTT AATTGTAGGA ATGGCTCAAG TTTTATACGC
ATCTAACATT CACATTATTT TGAAGATATT GAGCAGGAAA AAATTGTCTT CAATCATAGA AATTGGGTTA TAGAGATGTG
A

[show][hide][copy]TRANSCRIPT

>Vigan.02G257700.01
CAAAGGCAAC AGAAGATCTA GTTTCAGGTT GCAAGAGCAT AGCAGTGGTA GGGAAAACGG CAACCCCTTA GAAGACAAAA
GCCATGGTTC ACGTTTCCTT TTACAGAAAT TATGGGAAGA CGTTCAAGAA GCCGCGTCGT CCGTACGAGA AGGAGCGTCT
GGACGCGGAG CTGAAGCTGG TCGGAGAGTA CGGGCTACGG TGCAAGAGGG AGCTGTGGAG GGTGCAGTAC GCCCTCAGCC
GCATCCGCAA CAACGCGCGT AACCTCCTCA CTCTCGACGA GAAGAACCCG CGCCGGATCT TTGAGGGAGA GGCTCTCCTC
CGCCGCATGT TCCGCTACGG TCTCCTCGAT GAGACCCAGA ACAAACTCGA TTACGTCCTC GCACTCACTG TCGAGAACTT
CCTCGAGCGC CGCCTCCAGA CCCTCGTCTT CAAGTCTGGC ATGGCCAAGT CCATCCACCA TGCTAGGGTT CTCATCAAGC
AGAGACACAT CAGGGTTGGT AGGCAAGTGG TGAACATCCC ATCTTTCTTG GTGAGGGTTG ACTCACAGAA GCACATTGAC
TTTTCACTTA CAAGTCCCCT GGGTGGAGGA CGCCCTGGAA GAGTGAAAAG AAGGAACCAA AGGGCTGCTG CTAAGAAGGC
CGCAGGTGGA GATGGAGATG AAGAAGATGA GGATTAGACT ATTAATTATG TCCATCTCCA CTGCATTTAC CCATTGTGTC
ACCTTTTACT TTACGAGCCT AGATTATGGT TTTTGATTGT TATACATTTT CATTCTCGGT TCCTTGTTTG GGAAAACATT
TTGTTTGACA TATTATGTTT TTTGAAGTTA TATATTTTAA TGTATCAAGA TTTTCATTAA ATAATTTTTC TGACCTTCAT
ATAGAACATC ACAATCATAT GTAGTTATAG GAATATTTAA TTGTAGGAAT GGCTCAAGTT TTATACGCAT CTAACATTCA
CATTATTTTG AAGATATTGA GCAGGAAAAA ATTGTCTTCA ATCATAGAAA TTGGGTTATA GAGATGTGA

[show][hide][copy]CDS

>Vigan.02G257700.01
ATGGTTCACG TTTCCTTTTA CAGAAATTAT GGGAAGACGT TCAAGAAGCC GCGTCGTCCG TACGAGAAGG AGCGTCTGGA
CGCGGAGCTG AAGCTGGTCG GAGAGTACGG GCTACGGTGC AAGAGGGAGC TGTGGAGGGT GCAGTACGCC CTCAGCCGCA
TCCGCAACAA CGCGCGTAAC CTCCTCACTC TCGACGAGAA GAACCCGCGC CGGATCTTTG AGGGAGAGGC TCTCCTCCGC
CGCATGTTCC GCTACGGTCT CCTCGATGAG ACCCAGAACA AACTCGATTA CGTCCTCGCA CTCACTGTCG AGAACTTCCT
CGAGCGCCGC CTCCAGACCC TCGTCTTCAA GTCTGGCATG GCCAAGTCCA TCCACCATGC TAGGGTTCTC ATCAAGCAGA
GACACATCAG GGTTGGTAGG CAAGTGGTGA ACATCCCATC TTTCTTGGTG AGGGTTGACT CACAGAAGCA CATTGACTTT
TCACTTACAA GTCCCCTGGG TGGAGGACGC CCTGGAAGAG TGAAAAGAAG GAACCAAAGG GCTGCTGCTA AGAAGGCCGC
AGGTGGAGAT GGAGATGAAG AAGATGAGGA TTAG

[show][hide][copy]PROTEIN

>Vigan.02G257700.01
MVHVSFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNNARN LLTLDEKNPR RIFEGEALLR
RMFRYGLLDE TQNKLDYVLA LTVENFLERR LQTLVFKSGM AKSIHHARVL IKQRHIRVGR QVVNIPSFLV RVDSQKHIDF
SLTSPLGGGR PGRVKRRNQR AAAKKAAGGD GDEEDED*