GBrowse Details

Vigan.02G256900.01

Basic Information:
Name: Vigan.02G256900.01
Multiple alignment
Variant Information
Position: Chr02:36082829..36084768 (+ strand)
Length: 1940
Functional Information:
Description: Similar to Uncharacterized protein. [Q9FQE6, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Glutathione S-transferase, N-terminal (IPR004045)
Glutathione S-transferase, C-terminal-like (IPR010987)
Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.21,4.37,17.61,15.06,20.96,7.85,27.48,7.43
Arabidopsis thaliana homolog: AT5G62480.1
Automatic updates:
Name: KM818439 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max tau class glutathione S-transferase (GSTU21) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001251779 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glutathione S-transferase GST 12 (LOC547581), mRNA.
PubMed ID: 11080288 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:36082829..36082888 (+ strand)
Length: 60
Type: five_prime_UTR
Position: Chr02:36082889..36083218 (+ strand)
Length: 330
Type: CDS
Position: Chr02:36084140..36084514 (+ strand)
Length: 375
Type: CDS
Position: Chr02:36084515..36084768 (+ strand)
Length: 254
Type: three_prime_UTR

>Vigan.02G256900.01 class=Sequence position=Chr02:36082829..36084768 (+ strand)
AGTTCAGAAC AATATATAAA AAGACACCCA TAGGCTTAGC ATGAACTCCA TCATCAATTC ATGAGCAAAA TGGCAGAGAA
AGACAAGGTG ATCCTACACG GGATGTGGGC CAGTCCATAT GCCAAGAGGG TAGAATTGGC CCTTAATTTC AAGGGCATAC
CCTACGAGTA TGTGGAAGAA GACTTGAGAA ATAAGAGTGA ATTGCTTCTT AAGTACAACC CGGTTCACAA GAAGGTTCCT
GTACTTGTTC ATAATGGAAA GGCCATTGCT GAGTCCATGG TGATCCTTGA ATACATCGAT GAAACATGGA AACATGGTCC
CAACCTGCTT CCCACTGATT CCTACAGAAG GGCCCAAGCT CGCTTCTGGT CCAGTTTCAT TCAGGATCAG GTAATTAACT
ACATCATTGC ATGCATTTCT TGCTTCCATA ATGTTAATTT CGTATTAGTA TATGTATGAA AATGAAAATT AATACTAGCA
GTTGCTTAAA AACTAAACCA CTAGTAAAAG AAAATTTCTG ATCTGAGTTC ATACTTGTTC GCTAATTTCT GCTTGTAACA
GAGTAACAAC ACTGCTTCCA TATCGTACAC CACTTGTTTG GTGAAAGTAG TGTTAGAATG TTAAAAGACT AGTTACTATT
TGTAATTCTC AAATTTTGGT TTATAACTCA AGATTAGAAC CAAACACAAA AAGCTGGGAA TCTAAATGTG AGCATAAAGT
TGCACATCGG GTAAAGATGA GAAAATTGAA CAAAAATACT CATAAACTCC TTGTCTTGTA ATTTTGAGTT AGAGTGGTAT
CAATTAGACT CAAGTATCAT TGGGATTGAA TCCTTTATTT AATCTTCTGA AAAAACCCAT CACAAATGTA CACTAACTAA
GTTCTGATAG AATGGGTGGC ACATATTTTA AACAAGTTTC CTGAGTTTAA TAGGATCTTC AGTTTGAATG TTATAGGTGG
AAAGTATAAT TAAGTACTAA AAGTTATTAG TAGTTCTATA AGAAAAATCT GTCAACCGCT AAACTTGTGA ATAAAGAAAT
AAAGAAAGAA CTAAACACAG TTAATGCATG CATCCGTCAT TCAATCACAG ACAGTCCATT GTTTATATAA GTTTTATGAT
TTATATAATA ATTAATAAGT GGGACGGATT GTAAATTTAA ACCTTAGCCT TTTTTTAGTT TAGTGAACTA ACTAAAACAT
ATAGGATTTT CGTGTTTGGA ACTAAGATTT AACTTGGGTC AATCAAAGTT CTTGTTTAAA CCAAGTTCTA ATGCATGTCT
TGCTCTCTTT TTCTCTATTT TTTTGTTGCA GTTGATGGAG ACGACTATTC TAGTATTGAA AACTGACGGA GAAGCGCAAC
AGAAGGCAGT TGACCAAGTG TATGAAAAAC TAAATGTACT TGAAAATGGA ATGAAGACCT ATCTGGCAGA ACGCGATGCA
AAGGTGGAAA GCAACTTAGG AATCGTGGAA ATTGTGTTTT GTGCGTTGTT TGGTTGTCAC AAGGCTCATG AAGAAGTTCT
TGGCATGAAG TTCATAGTGC CTGAAAAGTT TCCAGTGTTA TTTTCTTGGT TGATGGCCAT TGCAGAGGTG GAAGCAGTGA
AAAAGGCAAC TCCTCCACAT GAAAAAACAG TGGGAATTCT TCATCTTTTC AGGCAGTCTG CTTTGAAATC TTCTGCTCCA
GCCTGATGTA GGCTTCACCA GTTCAATGGG TTTTCTATTA TTATTTGCTT CTTCTGCAAG TCTTCATATA TCTTTCAGTA
ACAGGATGAG TATAACACCT GTATCCTGTA ACACATGTAT TGTGACAACA TTGTCTGTGG TTATGTTTGA ATTCATGTTT
GTGGTAAAAA TAAAGTCACT TGATTGTAAT ATTAATTGTG ATGTAAAATA TGATCTTGGT AATTTGAATT ATTTTTAATT
AATGTCAGAA TTTTTTTCAA 

>Vigan.02G256900.01
AGTTCAGAAC AATATATAAA AAGACACCCA TAGGCTTAGC ATGAACTCCA TCATCAATTC ATGAGCAAAA TGGCAGAGAA
AGACAAGGTG ATCCTACACG GGATGTGGGC CAGTCCATAT GCCAAGAGGG TAGAATTGGC CCTTAATTTC AAGGGCATAC
CCTACGAGTA TGTGGAAGAA GACTTGAGAA ATAAGAGTGA ATTGCTTCTT AAGTACAACC CGGTTCACAA GAAGGTTCCT
GTACTTGTTC ATAATGGAAA GGCCATTGCT GAGTCCATGG TGATCCTTGA ATACATCGAT GAAACATGGA AACATGGTCC
CAACCTGCTT CCCACTGATT CCTACAGAAG GGCCCAAGCT CGCTTCTGGT CCAGTTTCAT TCAGGATCAG TTGATGGAGA
CGACTATTCT AGTATTGAAA ACTGACGGAG AAGCGCAACA GAAGGCAGTT GACCAAGTGT ATGAAAAACT AAATGTACTT
GAAAATGGAA TGAAGACCTA TCTGGCAGAA CGCGATGCAA AGGTGGAAAG CAACTTAGGA ATCGTGGAAA TTGTGTTTTG
TGCGTTGTTT GGTTGTCACA AGGCTCATGA AGAAGTTCTT GGCATGAAGT TCATAGTGCC TGAAAAGTTT CCAGTGTTAT
TTTCTTGGTT GATGGCCATT GCAGAGGTGG AAGCAGTGAA AAAGGCAACT CCTCCACATG AAAAAACAGT GGGAATTCTT
CATCTTTTCA GGCAGTCTGC TTTGAAATCT TCTGCTCCAG CCTGATGTAG GCTTCACCAG TTCAATGGGT TTTCTATTAT
TATTTGCTTC TTCTGCAAGT CTTCATATAT CTTTCAGTAA CAGGATGAGT ATAACACCTG TATCCTGTAA CACATGTATT
GTGACAACAT TGTCTGTGGT TATGTTTGAA TTCATGTTTG TGGTAAAAAT AAAGTCACTT GATTGTAATA TTAATTGTGA
TGTAAAATAT GATCTTGGTA ATTTGAATTA TTTTTAATTA ATGTCAGAAT TTTTTTCAA

>Vigan.02G256900.01
ATGAGCAAAA TGGCAGAGAA AGACAAGGTG ATCCTACACG GGATGTGGGC CAGTCCATAT GCCAAGAGGG TAGAATTGGC
CCTTAATTTC AAGGGCATAC CCTACGAGTA TGTGGAAGAA GACTTGAGAA ATAAGAGTGA ATTGCTTCTT AAGTACAACC
CGGTTCACAA GAAGGTTCCT GTACTTGTTC ATAATGGAAA GGCCATTGCT GAGTCCATGG TGATCCTTGA ATACATCGAT
GAAACATGGA AACATGGTCC CAACCTGCTT CCCACTGATT CCTACAGAAG GGCCCAAGCT CGCTTCTGGT CCAGTTTCAT
TCAGGATCAG TTGATGGAGA CGACTATTCT AGTATTGAAA ACTGACGGAG AAGCGCAACA GAAGGCAGTT GACCAAGTGT
ATGAAAAACT AAATGTACTT GAAAATGGAA TGAAGACCTA TCTGGCAGAA CGCGATGCAA AGGTGGAAAG CAACTTAGGA
ATCGTGGAAA TTGTGTTTTG TGCGTTGTTT GGTTGTCACA AGGCTCATGA AGAAGTTCTT GGCATGAAGT TCATAGTGCC
TGAAAAGTTT CCAGTGTTAT TTTCTTGGTT GATGGCCATT GCAGAGGTGG AAGCAGTGAA AAAGGCAACT CCTCCACATG
AAAAAACAGT GGGAATTCTT CATCTTTTCA GGCAGTCTGC TTTGAAATCT TCTGCTCCAG CCTGA

>Vigan.02G256900.01
MSKMAEKDKV ILHGMWASPY AKRVELALNF KGIPYEYVEE DLRNKSELLL KYNPVHKKVP VLVHNGKAIA ESMVILEYID
ETWKHGPNLL PTDSYRRAQA RFWSSFIQDQ LMETTILVLK TDGEAQQKAV DQVYEKLNVL ENGMKTYLAE RDAKVESNLG
IVEIVFCALF GCHKAHEEVL GMKFIVPEKF PVLFSWLMAI AEVEAVKKAT PPHEKTVGIL HLFRQSALKS SAPA*