GBrowse Details

Vigan.02G246200.01

Basic Information:
Name: Vigan.02G246200.01
Multiple alignment
Variant Information
Position: Chr02:34590188..34593945 (+ strand)
Length: 3758
Functional Information:
Description: Similar to PBng143. [Q8W437, Vigna radiata]
InterPro: Putative thiol-disulphide oxidoreductase DCC (IPR007263)
Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.46,0.86,3.76,83.60,0.07,1.53,0.34,13.55
Arabidopsis thaliana homolog: AT5G50100.1
Automatic updates:
Name: NM_001317318 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata uncharacterized protein At5g50100, mitochondrial (LOC106760917), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:34590188..34590323 (+ strand)
Length: 136
Type: five_prime_UTR
Position: Chr02:34590324..34590614 (+ strand)
Length: 291
Type: CDS
Position: Chr02:34590716..34590823 (+ strand)
Length: 108
Type: CDS
Position: Chr02:34591284..34591340 (+ strand)
Length: 57
Type: CDS
Position: Chr02:34591806..34591871 (+ strand)
Length: 66
Type: CDS
Position: Chr02:34592015..34592075 (+ strand)
Length: 61
Type: CDS
Position: Chr02:34592811..34592854 (+ strand)
Length: 44
Type: CDS
Position: Chr02:34593350..34593388 (+ strand)
Length: 39
Type: CDS
Position: Chr02:34593389..34593945 (+ strand)
Length: 557
Type: three_prime_UTR

>Vigan.02G246200.01 class=Sequence position=Chr02:34590188..34593945 (+ strand)
TTATGATTAG CATGGGTGAC CCCGAGGTTG CCACGCCCTC TACGTGTTTG CGGTTAAGAA TGAAGTTTGC GTGTAGCTAT
CAACCCTTCC TCTGCCTTCT TTCTTTCAAC AACACGACCA CAAAACAAAA GCAACAATGG CTCTCCCTTT GAGAGTCGCA
ACTGCTGTTT CTGTTTCACG CAATTCAATG CCCAAAAACC CAACGTTCAT TTCACTTCCA TATTTGAACT GCACTCTCAA
ATTCCACAAC TCACCTTCTC ATAATCCACG CCCCAACGCT CTTCCCACGC GGCCTCACCA CTACATTCGA GTCATCAGCG
AGACAACTGT GGAACCTGAA ATTTCTAAGA AGAAAAAAAA TGATTCGCCA AAAGATTGGA AAATTAAAAT GCTCTATGAT
GGAGATTGTC CCCTCTGCAT GCGCGAGGTT CTCCTTTATT TGTTCAAATC ATATTGTTTA ATGCTGGTAA TTCGTTTCTT
TGAGTTTTGG CATTGATAGA GTACTGTTTT GCATGTTGTT ATGATCAGGT GAATATGCTA AGAGAGAGAA ATAAGAGTTA
TGGCACAATC AAGTTTGTTG ATATTGGTTC TGATGAATAC TCTCCCGACG AGAATCAAAA CATTGACTAC GAAACCGTTA
GTCTTTGCTC TACGTTCTGT ACTATGCCAA TAATCACTTC CCCTTTTTTC CTATGTTTTT GTTAACTTAT TTTAATCTTA
AATTGTATTT AGTTAAAAAA AAATAACAAG AGTGGAAAAG TTTTTACACT GACAATCAAT CATAAATTGT ATTTAGCTAT
TACAAAAGTC AACAAACTGG TCTATGATGG AGTGTAAACT TTACTTGCAG ACTTGATATT ATATCTGGTT TTGGGCTTTG
CAGTACACTT ACTTTGCATT TGATTCATTC ATTGAATTGT TGAAACGTCC AAACAAATTG GTTTTTTTTT TTTGAAGATT
CTTATTATAC TAAGATATTT GTTTTCACAT GTGCTAATTG ATAGATGTTA TGTAGTGCAT AGATATGTGA GGTTTCAAGC
ATCTCTTGCA GTTGCGTCGA GATACAATAC AATGACTGTT TGTTTCTACT TTTTAGGCTA TGGGAAGAAT TCATGCTATT
CTCTCAGATG GAACTGTGGT TACAGATGTT GAGGTGTGGC TTCTTTCCTA ATCTTCATTT CCAGCCTTGG AGAAACTTCT
CCGTAATCCT ATTTCACACT TGCTTTGGAA TGCAAGTGCT TTTGAACATT CACATGAGTC TAAGTTTAGA AATTTTTATG
GAATTGGAAG AATCCAGAAG TTAGAATATT ACTATTGACT ATTGAATGAC TCTCACCATT CATTTTAGTG TAATACCAGT
ATGACTTAAA TATCAATATC CAGTTTCAAG ATAAATACGC CCTGCTGCTG ATATAAAATC TTTGTAACAC GAATGATTGA
TTAGTTACCT CATTCAATAA GAAAAAGACA TCCAAGATTG CAGAGGACTA TCAAGGGATA TATAATAGTG AAATATGAAT
CTGTTTTTGT TGAGTGAAAT TTGTTACTTA CTTTCCTGTG CAATAAAGAT TTATATATTT ATACACGCTT GTGTTTAACT
ATGACGGGAA TTCTGCAGGC GTTTAGGAGA TTATATGAAC ATGTTGGTCT TGGTTGGGTT TATGCAATTA CAAAATATGA
ACCAGTAAGG CTTCCTTTCA TAGTTTTGAA GGACTTGTTA TCTTGTTCAT CTAGCATGGA CAAATCCCTT CACTACTGCT
TACTGAAGAA TAAGATAGCT TATATCTTTA TATATTATGT TATTAATGGA GGAAAAAACA TTTGCAGATT GCTAAAATTG
CTGATTCTGT ATATGGTGTC TGGGCTAAAT ACCGACTTCA AGTTACAGGT AAAATAAATG CACATTAATA ATTTTACACC
AAAATATTCC TTTCAGTTAT ATTGCTATTG TGATAGACTC AAATCAAACA CACAAAATGA AAGGAAAAAG GTATTGTTTT
ATTATTCAGA GAAGTACTCA ATGACACACC TAAAACAGAG TTGTAGTGAA ACGGATTAAA ATAAAACCAG AAATGCACAT
GACTTCAATC ACTTAGACAC CACACTTCTC AGTCACGATT GTTTCAACAA ACACAACATT GCCCTTGTCC CTCACTCCCC
ATGCACTCCC TTGTCATTGT CCTTTCTCCA GGTTCCATCC TATGAGTGGC ATATTAGAAA CCACCTCCTA ATTAATTAGC
ATTTATCAAG GTTGGGCTTT CTTCCTCCTT AGATAGACCT TCCAGGTTTT ATAGTCACTA TTCAGGACTA GGCTGACTTC
CTCATTCTGA TTATTAGCCC ATCACATTGT TCTGTGGCTA CTTCTAACAC CTTATATAGG TTTTGACTTT AGTTGGGCAT
GAGCTGATGT ACTTGTGAGT CTTTATTTAG TTGGAATAAT AGGGTCATAT TATAAGCCTC GGAAGCTTAG AATTATTGTG
AAAGGCTATC CTCTCATTTA ACATTTGATG GCTTAATCAG TCCATCAATG AGTAAAGACT ATCACTTTTA GTTGCATTAT
TCATTTCTAA CTATTTATTT GGTTATAATT TCCACCTCTT TTTTTCCATT TTTTGGTTTC CAGGACGGCA GCCTATAGAA
GAAATATTAG AAGCTCGAAA GAAGAAGGTA GATAGACTCA ACACAAAAAG TATCATATTA AATTCAGCAT GGAACATGTC
TGCAGAATAA AACATAAAAA ATCAAGATGG CAAGAAAATT TTGTAAGGAA AGAAATTTTG AAGTTAGAGA ACAGTATAAA
TTTTGAAAGA ATGATAGTTT TTGCCATCAT ATACATGTGA TGATTCAGAT TGAATTTATG ATCCATTGCC TTTATCAGTA
GTCTGTATCC CTTTTATTTA AATTATACCT GAAATTAAGC TGCAAAAATT AAAGAAAAAT TGTGCCTTTG CCTGTTACAA
TAAACAAAAT AGCACTTAAT TCATAACCTA GTGGAGAAAA CACTAAGATA TGGTATATAT GAGTGTGAAT GTCAGAAAGC
TCATGAATAA TTTGACTTTT AAGTATTTGT TCTGGACCCA TGTTTTTTCT GTTATAACTT TCATATGCTT GATAATATAA
AGCTTTTTGA CTAAGTGTTT ATCTATTATT TTTTCTTTGT AGGGTGAATT ATGCAAAGAC AGCAATGCTT GCAAGATGTA
AATTTCCTTA ATATCAGATT CCAAATTGCT CTTTATGCGA TTTGTTTCCA AATTTGGTCG TCATCCTCTG AAGCAGGGTT
TTATATGATC TCATTTACAA AAAGAAGCCA ACATAGATTA GTCTCGCAAC ATTTTCTGTC TGTCAGCATA TGCAATTGAT
TAACGTTTTC AAATTTTTCT GCAATGCATC TGGCATAGAA ATAGTAGTGT AAATAAAATA TATTTGTATT TACCCTGTAC
TCCCCATTAA GTCTTAGCTG ACTGTTCAAG ATTGTACAAG TTACATGACA CCAGCATCTG TGCTCTGGTG TACTTATCAG
TTATCACAAC AGACTTGGCG GGGACAAATT GAGAAGTTTA TTTTGTCTAA ACATACATAC ATGTATATGT ACACACTGAG
GGTGGAAGAT AGTGTTTTAC TGTTGGAGAT TCCCTTATCT CTGCCAGTAG AATCAATTAT ATTTATCCAT ATCCGTCATC
AAAACCTTCA TAACTGGGCT GATATTTTTC TCTGGACTCC CATCTGTTTT AGTATCTTCA CTTTATTTTT TTATCTCT

>Vigan.02G246200.01
TTATGATTAG CATGGGTGAC CCCGAGGTTG CCACGCCCTC TACGTGTTTG CGGTTAAGAA TGAAGTTTGC GTGTAGCTAT
CAACCCTTCC TCTGCCTTCT TTCTTTCAAC AACACGACCA CAAAACAAAA GCAACAATGG CTCTCCCTTT GAGAGTCGCA
ACTGCTGTTT CTGTTTCACG CAATTCAATG CCCAAAAACC CAACGTTCAT TTCACTTCCA TATTTGAACT GCACTCTCAA
ATTCCACAAC TCACCTTCTC ATAATCCACG CCCCAACGCT CTTCCCACGC GGCCTCACCA CTACATTCGA GTCATCAGCG
AGACAACTGT GGAACCTGAA ATTTCTAAGA AGAAAAAAAA TGATTCGCCA AAAGATTGGA AAATTAAAAT GCTCTATGAT
GGAGATTGTC CCCTCTGCAT GCGCGAGGTG AATATGCTAA GAGAGAGAAA TAAGAGTTAT GGCACAATCA AGTTTGTTGA
TATTGGTTCT GATGAATACT CTCCCGACGA GAATCAAAAC ATTGACTACG AAACCGCTAT GGGAAGAATT CATGCTATTC
TCTCAGATGG AACTGTGGTT ACAGATGTTG AGGCGTTTAG GAGATTATAT GAACATGTTG GTCTTGGTTG GGTTTATGCA
ATTACAAAAT ATGAACCAAT TGCTAAAATT GCTGATTCTG TATATGGTGT CTGGGCTAAA TACCGACTTC AAGTTACAGG
ACGGCAGCCT ATAGAAGAAA TATTAGAAGC TCGAAAGAAG AAGGGTGAAT TATGCAAAGA CAGCAATGCT TGCAAGATGT
AAATTTCCTT AATATCAGAT TCCAAATTGC TCTTTATGCG ATTTGTTTCC AAATTTGGTC GTCATCCTCT GAAGCAGGGT
TTTATATGAT CTCATTTACA AAAAGAAGCC AACATAGATT AGTCTCGCAA CATTTTCTGT CTGTCAGCAT ATGCAATTGA
TTAACGTTTT CAAATTTTTC TGCAATGCAT CTGGCATAGA AATAGTAGTG TAAATAAAAT ATATTTGTAT TTACCCTGTA
CTCCCCATTA AGTCTTAGCT GACTGTTCAA GATTGTACAA GTTACATGAC ACCAGCATCT GTGCTCTGGT GTACTTATCA
GTTATCACAA CAGACTTGGC GGGGACAAAT TGAGAAGTTT ATTTTGTCTA AACATACATA CATGTATATG TACACACTGA
GGGTGGAAGA TAGTGTTTTA CTGTTGGAGA TTCCCTTATC TCTGCCAGTA GAATCAATTA TATTTATCCA TATCCGTCAT
CAAAACCTTC ATAACTGGGC TGATATTTTT CTCTGGACTC CCATCTGTTT TAGTATCTTC ACTTTATTTT TTTATCTCT

>Vigan.02G246200.01
ATGGCTCTCC CTTTGAGAGT CGCAACTGCT GTTTCTGTTT CACGCAATTC AATGCCCAAA AACCCAACGT TCATTTCACT
TCCATATTTG AACTGCACTC TCAAATTCCA CAACTCACCT TCTCATAATC CACGCCCCAA CGCTCTTCCC ACGCGGCCTC
ACCACTACAT TCGAGTCATC AGCGAGACAA CTGTGGAACC TGAAATTTCT AAGAAGAAAA AAAATGATTC GCCAAAAGAT
TGGAAAATTA AAATGCTCTA TGATGGAGAT TGTCCCCTCT GCATGCGCGA GGTGAATATG CTAAGAGAGA GAAATAAGAG
TTATGGCACA ATCAAGTTTG TTGATATTGG TTCTGATGAA TACTCTCCCG ACGAGAATCA AAACATTGAC TACGAAACCG
CTATGGGAAG AATTCATGCT ATTCTCTCAG ATGGAACTGT GGTTACAGAT GTTGAGGCGT TTAGGAGATT ATATGAACAT
GTTGGTCTTG GTTGGGTTTA TGCAATTACA AAATATGAAC CAATTGCTAA AATTGCTGAT TCTGTATATG GTGTCTGGGC
TAAATACCGA CTTCAAGTTA CAGGACGGCA GCCTATAGAA GAAATATTAG AAGCTCGAAA GAAGAAGGGT GAATTATGCA
AAGACAGCAA TGCTTGCAAG ATGTAA

>Vigan.02G246200.01
MALPLRVATA VSVSRNSMPK NPTFISLPYL NCTLKFHNSP SHNPRPNALP TRPHHYIRVI SETTVEPEIS KKKKNDSPKD
WKIKMLYDGD CPLCMREVNM LRERNKSYGT IKFVDIGSDE YSPDENQNID YETAMGRIHA ILSDGTVVTD VEAFRRLYEH
VGLGWVYAIT KYEPIAKIAD SVYGVWAKYR LQVTGRQPIE EILEARKKKG ELCKDSNACK M*