GBrowse Details

Vigan.02G246100.01

Basic Information:
Name: Vigan.02G246100.01
Multiple alignment
Variant Information
Position: Chr02:34571932..34574540 (- strand)
Length: 2609
Functional Information:
Description: Similar to Uncharacterized protein. [V4TI01, Citrus clementina.]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, LIM-type (IPR001781)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.83,3.81,2.85,1.64,8.38,20.13,19.36,7.28
Automatic updates:
Name: NM_001248342 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500501 (LOC100500501), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251261 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500444 (LOC100500444), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:34571932..34572234 (- strand)
Length: 303
Type: three_prime_UTR
Position: Chr02:34572235..34572444 (- strand)
Length: 210
Type: CDS
Position: Chr02:34572864..34572953 (- strand)
Length: 90
Type: CDS
Position: Chr02:34573090..34573130 (- strand)
Length: 41
Type: CDS
Position: Chr02:34573264..34573360 (- strand)
Length: 97
Type: CDS
Position: Chr02:34574186..34574323 (- strand)
Length: 138
Type: CDS
Position: Chr02:34574324..34574540 (- strand)
Length: 217
Type: five_prime_UTR

>Vigan.02G246100.01 class=Sequence position=Chr02:34571932..34574540 (- strand)
TTTATGTTAT TTTTGTCTCT AGCAAGTTTG AAAATTAGGT GCATCATATG CAGGACCAAC ATTTTCAACT GCTACTCTGA
ATTTGTCTGA GTCTGAGCTG TTGATTCTAC CAACACACAA CTCTGAGTGT GAAAAGGAAA AAGTGAAAAG AAGAAATTGG
GAGAAAAAAA AAAGGTATTC TCTTCATTCA GTGAGGTTCT GAATTGTGCA ACTTGAGATG GCATCATTTG CAGGGACTAC
CCAGAAGTGC AAAGCATGTG AGAAGACAGT GTATTTGGTG GATCAGCTCA CTGCTGACAA CAAGATCTAT CACAAATCCT
GTTTCAGATG CTACCACTGC AACGGTACCC TCAAGGTTTG ATCACACTTT TTTCTCTTGC TTCAACTCAC CAAGATCAAA
ACTTGATTTT TCTCCACTTT TCTCTTTATG TATGAACGAG GAGGATGCAT TGAGTTTGAT TGCCACATGT TTTATTTGAA
AACTTTCATT GTTTTTTGGT AGTTTGACTA TAGCTATTCT TTTATTCACT TGGTTTCTTT TCTTCTATTC ATGATGATTT
AATCTGCATG TTATTGCTTC AGTGAATGGT AAGTGCTTCA TAAGGAAATA TGATTTGGAT GGCCTAGTAG AGATTTTGTT
CTATTTCTAG CACTTACAAA ACACAGGGTT TTGAACATTT TTTCAATCTA ATTGTCAGAG AAATGAGTAG TTTAGTCATA
AAATTGAGGA TGATTGAATA GGATGAAGTA ATGACATGAT TTTGAGAAGG ATTTTATGAT CCTGAGTAGT TGAAGGCTCT
TGATTGATCT AAAGAAATGG AATCAAGGCT TTATATTTTT ATTGATTGAA GCTCAGGCTA TGCAGCTGCT ATTTGCCCCT
TTTCTTCATT ACTTAAACAA AATGCATCAC ACTCTTCTCA ATGTGTCATT TGCTATCCCG AATTTCTCTT TTAGCCCCCC
AATTTCTTGC TCTTTTACGA TCATGCATTT TGTATGTTTT TTGACTCAAT GATTTCAGAT GTTCTGATTC TGAATGATAA
AATCTATAAT GGGGTCATAT GAAATAGGAC ATAATGTCAG CTCAAATGGT TGTTTTTCTC TGAAGCCTAA AGATTGAAAT
TGTTAAAGAT CAAATTGGTG AATACATATT TAATCCTCTT TGCTTCATTC ATCCCTGCAG CTGAGTAACT ATTGTTCCTT
TGAGGGTGTT TTATACTGTA AGCCTCATTT TGATCAACTC TTTAAGAAGA CTGGTAGCTT GGAGAAAAGT TTTGAAGGTG
AATTGCTGTT ATTTAGCTGT TTCTGACACA CAATACTTAC AATTTCTATC ATTCGGATCA GCCCGCTACT AATATTGTTT
CTTCCTTGTT TTCTTGTTTT CTCTTTAACT TCTACATTTA TTGCTTGCAG GTATTCCAAG AACTGCTAGA CTTGAAAGAT
CTGCTGATCA GGTTTTCCAC CTCATTTTAA CTTCAAAAAT ATTTCTTTTC ATCTCAGAAT TATTACTCAG TCTTCTTACA
TAGAGTTCTT TTTTACACAT TTCTGTTTGA TTCTTCTTGT ACGTAAATAC TCTCTGGGAT TTTTCAGGTC CAAACCAATA
GCAAGGTTTC AAATTTATTT GCTGGAACTC AGGAAAAATG TGTTGCTTGC AAGAAAACAG TGTACCCAAT TGAAAAGGTA
CATAACTATA TTTATCAATA TTTTTGCTTC ATATCAAGCA AAACTGATCG ATCTGGTTAA CCTTTTCATA ACATTCCCCT
CTCCATCATC ATTTGATTTG TGATCCTTAT TCAAATCTAG ATCTAGAATC TGTACAAGAA CTTATTTAGA CTTAAAAATT
CGGCTCATGC AGCAATGAAA AAAAAAACTA GCCACTAGCC AAACCTCTGA TACTCATAAT AGAGAGACAA TCTAACAAAT
GTCTAAATTC ATGTCTTTCT TATTGTTATC ATTATGAGGG TGAGTTGGTG CGACATAATG ATGAGGGAGA CAGAGTGAAA
GATCCATTTT TGAAACATTT GTTGTTAACT TTAGCAACAA TTTTAGTGAT TTACATCATA TTATGTCTTA TATGACTATC
CACTTTTGTT TTTCAGGTAG CTGTTGATGG AACATCTTAC CATAAGGCTT GTTTCAGGTG CACTCATGGA GGATGTGTAA
TTAGCCCATC AAATTATGTT GCCCATGAAC ACCGTCTTTA TTGTAGGCAC CATCACACTC AGTTGTTCAA GCAGAAAGGT
AACTTTAGCC AACTCGACAA GCAAGAAAAT GATGAAGGGG TAACCGAGAA CACAACAACA GAGTAGTAAT AGCATGCATG
CAACTTTCAA ATTACAGTGG CAATACAACT TTAGTTCGTG ACTCTTTTTC AGGAACATAT GTGCCATTGT TTCAATCCAC
TTTTCTCTCT TTTTGTTTTG TATGAGAAAA ATTTTGCTAG ACAAATTTTG GGGTTAATAA TTGAGAAGTA ATTAGTAGTT
ATTTCAGCAT AATCATATGG CTGACAAATC TGAATTTTGC TTTGAAGGTT TATGAAGTTT GTACTTTTCA TTCCTGTGAT
AAAATCTTGT CTGTAAATTT CCTGTTGGTC CTTGTTATTG ACATAAAAA

>Vigan.02G246100.01
TTTATGTTAT TTTTGTCTCT AGCAAGTTTG AAAATTAGGT GCATCATATG CAGGACCAAC ATTTTCAACT GCTACTCTGA
ATTTGTCTGA GTCTGAGCTG TTGATTCTAC CAACACACAA CTCTGAGTGT GAAAAGGAAA AAGTGAAAAG AAGAAATTGG
GAGAAAAAAA AAAGGTATTC TCTTCATTCA GTGAGGTTCT GAATTGTGCA ACTTGAGATG GCATCATTTG CAGGGACTAC
CCAGAAGTGC AAAGCATGTG AGAAGACAGT GTATTTGGTG GATCAGCTCA CTGCTGACAA CAAGATCTAT CACAAATCCT
GTTTCAGATG CTACCACTGC AACGGTACCC TCAAGCTGAG TAACTATTGT TCCTTTGAGG GTGTTTTATA CTGTAAGCCT
CATTTTGATC AACTCTTTAA GAAGACTGGT AGCTTGGAGA AAAGTTTTGA AGGTATTCCA AGAACTGCTA GACTTGAAAG
ATCTGCTGAT CAGGTCCAAA CCAATAGCAA GGTTTCAAAT TTATTTGCTG GAACTCAGGA AAAATGTGTT GCTTGCAAGA
AAACAGTGTA CCCAATTGAA AAGGTAGCTG TTGATGGAAC ATCTTACCAT AAGGCTTGTT TCAGGTGCAC TCATGGAGGA
TGTGTAATTA GCCCATCAAA TTATGTTGCC CATGAACACC GTCTTTATTG TAGGCACCAT CACACTCAGT TGTTCAAGCA
GAAAGGTAAC TTTAGCCAAC TCGACAAGCA AGAAAATGAT GAAGGGGTAA CCGAGAACAC AACAACAGAG TAGTAATAGC
ATGCATGCAA CTTTCAAATT ACAGTGGCAA TACAACTTTA GTTCGTGACT CTTTTTCAGG AACATATGTG CCATTGTTTC
AATCCACTTT TCTCTCTTTT TGTTTTGTAT GAGAAAAATT TTGCTAGACA AATTTTGGGG TTAATAATTG AGAAGTAATT
AGTAGTTATT TCAGCATAAT CATATGGCTG ACAAATCTGA ATTTTGCTTT GAAGGTTTAT GAAGTTTGTA CTTTTCATTC
CTGTGATAAA ATCTTGTCTG TAAATTTCCT GTTGGTCCTT GTTATTGACA TAAAAA

>Vigan.02G246100.01
ATGGCATCAT TTGCAGGGAC TACCCAGAAG TGCAAAGCAT GTGAGAAGAC AGTGTATTTG GTGGATCAGC TCACTGCTGA
CAACAAGATC TATCACAAAT CCTGTTTCAG ATGCTACCAC TGCAACGGTA CCCTCAAGCT GAGTAACTAT TGTTCCTTTG
AGGGTGTTTT ATACTGTAAG CCTCATTTTG ATCAACTCTT TAAGAAGACT GGTAGCTTGG AGAAAAGTTT TGAAGGTATT
CCAAGAACTG CTAGACTTGA AAGATCTGCT GATCAGGTCC AAACCAATAG CAAGGTTTCA AATTTATTTG CTGGAACTCA
GGAAAAATGT GTTGCTTGCA AGAAAACAGT GTACCCAATT GAAAAGGTAG CTGTTGATGG AACATCTTAC CATAAGGCTT
GTTTCAGGTG CACTCATGGA GGATGTGTAA TTAGCCCATC AAATTATGTT GCCCATGAAC ACCGTCTTTA TTGTAGGCAC
CATCACACTC AGTTGTTCAA GCAGAAAGGT AACTTTAGCC AACTCGACAA GCAAGAAAAT GATGAAGGGG TAACCGAGAA
CACAACAACA GAGTAG

>Vigan.02G246100.01
MASFAGTTQK CKACEKTVYL VDQLTADNKI YHKSCFRCYH CNGTLKLSNY CSFEGVLYCK PHFDQLFKKT GSLEKSFEGI
PRTARLERSA DQVQTNSKVS NLFAGTQEKC VACKKTVYPI EKVAVDGTSY HKACFRCTHG GCVISPSNYV AHEHRLYCRH
HHTQLFKQKG NFSQLDKQEN DEGVTENTTT E*