GBrowse Details

Vigan.02G205200.01

Basic Information:
Name: Vigan.02G205200.01
Multiple alignment
Variant Information
Position: Chr02:27725417..27726461 (+ strand)
Length: 1045
Functional Information:
Description: Similar to UPF0235 protein C15orf40 homolog isoform X1. [XP_004502908.1, Cicer arietinum]
InterPro: Protein of unknown function DUF167 (IPR003746)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.00,9.34,9.77,6.99,12.70,17.84,10.80,7.94
Arabidopsis thaliana homolog: AT1G49170.1
Automatic updates:
Name: NM_001250704 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527290 (LOC100527290), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251604 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499954 (LOC100499954), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:27725417..27725534 (+ strand)
Length: 118
Type: five_prime_UTR
Position: Chr02:27725535..27725694 (+ strand)
Length: 160
Type: CDS
Position: Chr02:27725775..27725863 (+ strand)
Length: 89
Type: CDS
Position: Chr02:27726127..27726255 (+ strand)
Length: 129
Type: CDS
Position: Chr02:27726256..27726461 (+ strand)
Length: 206
Type: three_prime_UTR

>Vigan.02G205200.01 class=Sequence position=Chr02:27725417..27726461 (+ strand)
TAACTTTTTA ATCCCATGCA GCAAACTGCA TCTTATAATC GGTACTCTCA CGCATCATAA AATTAAGAAG AGAAGGACGG
CGTTCCTTGT ACGCAACGGA AAGGCGTCGT TTTAAATTAT GCCGCCGGCG AAGAAGGGAA AAGCAAAGGC CGAGCCTAGG
GTAACGCCGC CGCCGGAGAA ACCTAACGAC TTTCCGTCTT GTATTCGCTG CGTGCCTCCT TCCTCCGTCG CCGTAACCAT
CCACGCCAAA CCTGGTTCCA AATCTGCATC CGTAACCGGT CTTTTTCAAT CTCAATCTAT CTAGCGTTTC TATGATTTTA
GTTGTTAAAT GCGATTTTAA TTTTTTTTCA ATAATTAGAT ATTAGCGATG AAGCGGTGGG AGTTCAAATT GACGCACCTG
CCAGGGATGG CGAAGCAAAT GCAGCTCTTC TCGATTTCTT CAGCTCTGTA AGTTCCGATT TCTGATTGTG ACATTTTCAT
TTGTATGGTA TTATTCTATC CATGCGGTGG GCGATCAAAA GGTGTAATTG CATATATTTG GTGTCTATAA TTCCAAACAA
AATTTAGTCT ACATTTGAAA CATTTTCTAC TAATTTTTAT GCATATTATT ATTTTTAATT TTTTTAATCT CTTCATATGC
CATTTTAATT CTTTATTAAA ATGAAAAAAA ACATATTTTA AAGTATTAAG AGTAAAATAT TAATTTACAG GTTTTAGGTG
TGAAACGAAG ACAAGTCTCT ATAGGCACAG GTTCTAAGTC GAGAGATAAA ACGGTGATCG TGGAAGATGT GACTCAGCAA
TATGTTTTTG ATGCTTTGGA TAAAGTCTCG AAGCAGTAGT GATGTTTTAT TGATGAGGAG GCATCTTGCT GTTATTATTA
TTATAATTAA TATCTGTTAG AAGAGTAATA TAGTGGTAGT GTTGCAGTGA AGAGCCTTGT ATTGGTTTTA TTTTGGTTTT
TTCCTTCATA GTGTATACTT TGACAACTTG ATGGAGTGCA TGTTTGGATT CAATTCAATT CTTCTATTCA TTCCAATTCC
ATAAA

>Vigan.02G205200.01
TAACTTTTTA ATCCCATGCA GCAAACTGCA TCTTATAATC GGTACTCTCA CGCATCATAA AATTAAGAAG AGAAGGACGG
CGTTCCTTGT ACGCAACGGA AAGGCGTCGT TTTAAATTAT GCCGCCGGCG AAGAAGGGAA AAGCAAAGGC CGAGCCTAGG
GTAACGCCGC CGCCGGAGAA ACCTAACGAC TTTCCGTCTT GTATTCGCTG CGTGCCTCCT TCCTCCGTCG CCGTAACCAT
CCACGCCAAA CCTGGTTCCA AATCTGCATC CGTAACCGAT ATTAGCGATG AAGCGGTGGG AGTTCAAATT GACGCACCTG
CCAGGGATGG CGAAGCAAAT GCAGCTCTTC TCGATTTCTT CAGCTCTGTT TTAGGTGTGA AACGAAGACA AGTCTCTATA
GGCACAGGTT CTAAGTCGAG AGATAAAACG GTGATCGTGG AAGATGTGAC TCAGCAATAT GTTTTTGATG CTTTGGATAA
AGTCTCGAAG CAGTAGTGAT GTTTTATTGA TGAGGAGGCA TCTTGCTGTT ATTATTATTA TAATTAATAT CTGTTAGAAG
AGTAATATAG TGGTAGTGTT GCAGTGAAGA GCCTTGTATT GGTTTTATTT TGGTTTTTTC CTTCATAGTG TATACTTTGA
CAACTTGATG GAGTGCATGT TTGGATTCAA TTCAATTCTT CTATTCATTC CAATTCCATA AA

>Vigan.02G205200.01
ATGCCGCCGG CGAAGAAGGG AAAAGCAAAG GCCGAGCCTA GGGTAACGCC GCCGCCGGAG AAACCTAACG ACTTTCCGTC
TTGTATTCGC TGCGTGCCTC CTTCCTCCGT CGCCGTAACC ATCCACGCCA AACCTGGTTC CAAATCTGCA TCCGTAACCG
ATATTAGCGA TGAAGCGGTG GGAGTTCAAA TTGACGCACC TGCCAGGGAT GGCGAAGCAA ATGCAGCTCT TCTCGATTTC
TTCAGCTCTG TTTTAGGTGT GAAACGAAGA CAAGTCTCTA TAGGCACAGG TTCTAAGTCG AGAGATAAAA CGGTGATCGT
GGAAGATGTG ACTCAGCAAT ATGTTTTTGA TGCTTTGGAT AAAGTCTCGA AGCAGTAG

>Vigan.02G205200.01
MPPAKKGKAK AEPRVTPPPE KPNDFPSCIR CVPPSSVAVT IHAKPGSKSA SVTDISDEAV GVQIDAPARD GEANAALLDF
FSSVLGVKRR QVSIGTGSKS RDKTVIVEDV TQQYVFDALD KVSKQ*