GBrowse Details

Vigan.02G204700.01

Basic Information:
Name: Vigan.02G204700.01
Multiple alignment
Variant Information
Position: Chr02:27677460..27680308 (+ strand)
Length: 2849
Functional Information:
Description: Similar to Uncharacterized protein. [I1KBF7, Glycine max]
GO: Biological Process: glutamine catabolic process (GO:0006543)
Biological Process: carbamoyl phosphate biosynthetic process (GO:0070409)
InterPro: Carbamoyl-phosphate synthase, small subunit N-terminal domain (IPR002474)
Carbamoyl-phosphate synthase, small subunit (IPR006274)
Glutamine amidotransferase (IPR017926)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:79.87,74.01,53.16,58.79,92.32,89.07,18.20,39.75
Arabidopsis thaliana homolog: AT3G27740.1
Automatic updates:
Name: NM_001254660 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max carbamoyl-phosphate synthase small chain-like (LOC100788470), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:27677460..27677619 (+ strand)
Length: 160
Type: five_prime_UTR
Position: Chr02:27677620..27677743 (+ strand)
Length: 124
Type: CDS
Position: Chr02:27677954..27678086 (+ strand)
Length: 133
Type: CDS
Position: Chr02:27678182..27678270 (+ strand)
Length: 89
Type: CDS
Position: Chr02:27678361..27678421 (+ strand)
Length: 61
Type: CDS
Position: Chr02:27678516..27678583 (+ strand)
Length: 68
Type: CDS
Position: Chr02:27678691..27678819 (+ strand)
Length: 129
Type: CDS
Position: Chr02:27678893..27679002 (+ strand)
Length: 110
Type: CDS
Position: Chr02:27679090..27679437 (+ strand)
Length: 348
Type: CDS
Position: Chr02:27679672..27679837 (+ strand)
Length: 166
Type: CDS
Position: Chr02:27679946..27680034 (+ strand)
Length: 89
Type: CDS
Position: Chr02:27680035..27680308 (+ strand)
Length: 274
Type: three_prime_UTR

>Vigan.02G204700.01 class=Sequence position=Chr02:27677460..27680308 (+ strand)
TGTTACCAGT TGCATGGAGG AAAAATGATT ATTAAAAAAG TAAAAAAGGG AAAAAGAAGG TGATGAAATT GCAAAATAAA
AACCTAGGTA ACGCGAGGCT GTGCACTACG ACAGGACTGG TTTCACAGAC ATACCAGTAA CGGTGCTGCA GTGACTGTCC
ATGGCGACAA AAGCTTTGTC TTTCGCTTTG TCCTTCAACG ACCTCACCAA CTGCTTCTCC TCCAGTCCGC CATCCGCCGC
CGCCGCAGCT AAAGTTTCCG TCTTTACCGT CAGATGCTCT TCGGGTAACC TCTCAATGGG TTTCCTCAAT ACCTTCACAA
CGTTTTCTTT TTCAAAGGAC CCATATTTTA GTGCATTTCG TGACATGAAG ATTACTATTT CTTTTTCCCC TTTGATGTGA
ATGTCCCCTG TTTAGCTTTT GGTTTTGGAG GGTATTGTTA ATTTGCTATC CGTGGTTCAA ATAAGTCGAT GCTGTTGTAT
TACATATGAC ATAGGTAATG GAGAAAGACC TTGGAAAAAC TCAGATGCTA GACTGGTTCT AGAAGATGGT TCAATTTGGA
GAGCGAAATC GTTTGGTGCT TCAGGGACTC AAGTTGGCGA AGTTGTTTTC AATACATCAC TGACAGGGTC AGGAAACTAT
GAATCTTGGG ATGTTTCCTT TTTTTTACAG CTTTGCTTGC AAGCTAAACC GTGGTAATCT TTCTTATGTG TGCGATTGCC
AGGTATCAGG AAATTTTGAC AGATCCTAGT TATGCTGGCC AGTTTGTGCT GATGACAAAT CCTCATATTG GGAATACTGG
CGTTAATTTT GGTTGGTGGT TTCTTTTAAT AATTTGAGTG AGTCCTGAAT TGTCGAGCTT GGAAGCTATT TGATAACTGT
CTCTTGGTTC GCTATTGCCA GATGATGAGG AATCGATGCA GTGTTTCCTT GCTGGTCTTG TAATTAGAAG TTTGAGCATC
AGGTTCTGTT CTTGCGCTTT GAAATGTTTC ATGATTGACT GAGGTTTACT TAGTCTACTC ACTCTCCCTG TGTCTATGCA
ATGCATGTTT TTTCAGTACC TCTAACTGGA GATGTGCGAA GGCTCTGGGT GAATACTTAG CTGAAAGGAA TATCATGGGA
ATTTGTGAGT AGTTTATGTA AAAAGATATT CTGCGAAGAA TGTTGTTCTC TGCAATCTGC ATAGGTTTAA ATCCTGGTTT
CTGATTTTGA TGTTGCTTTG TGATGCAACA GATGATGTTG ATACTCGTGC AATCACACGC AGATTGCGGC AAGATGGCAG
TCTTATTGGT GTTTTGAGCA CGGACAATTC CAAAACAGAT GAGCAACTGC TTCAGATGTC TAAGTCATGG GACATTGTTG
GTAAGTATGT GAGTTTGAGT TTATGTACAT GTTTCTAAAA TTGGAATTAC ATGGATGCTA TTTCATTTTC CAGGTGTTGA
TCTAATAAGT GGAGTATCAT GCAAAAGTCC ACATGAGTGG GTTGATAAAA CAAAGCAACA ATGGGAGTTT AGTTCCGGTA
AAGTGGCAAG AGAGAATTTC CATGTACGTA ATGCTGTATG CTATTAGTAC TGAATTTTGT TACTATTGGG TTATTTAATT
TATATTGATT GCTGATGAAT GAAAATGCAG GTGGTTGCTT ATGATTTTGG AATCAAGCAT AATATTCTTA GACGCCTAGC
ATCTTATGGC TGCAAAATCA CTGTTGTGCC ATCTACATGG CCAGCATCAG AAACTTTGAA GATGAAGCCA GATGGGGTTC
TTTTTAGTAA TGGCCCTGGA GATCCATCTG CTGTTCCATA TGCTGTTGAA ACAGTGAAGA ATATAATTGG AAAGGTGCCT
GTTTTTGGAA TTTGCATGGG CCATCAATTG CTAGGCCAGG CTTTAGGAGG TAAAACATTC AAGATGAAAT TTGGTCACCA
CGGAGGAAAT CATCCTGTTC GTAACCTTCA AACCGGCCAT GTTGAAATTA GTGCTCAGGT ATGTGAACTA ATGGATGATT
ATCTGTTACT TATTTTTTGT GTTCCACCAT AATTATACTT AAAAATTCCA TTGGAGTGCA TTAGGCCGTG TGCTCAGTGC
TGAGGGAGAT ATTTTTACCT CATAAAATCA TAGTCACTTG AGATTTTTTT CTTGTTTTTA TCAAGAAAAG TGTTTTCATG
TTAAGTATGT TGTTTTATTC ATGGCTCATG GATTGGTATA TAAAATTGGC AGAACCACAA CTATGCTGTT GACCCTGCAA
CACTGCCGGA AGGAGTGAAG GTTACTCATA TCAATCTCAA TGATGGAAGC TGTGCCGGTC TTTCTTTCCC TGCACAACAA
CTTATGTCTC TTCAATACCA CCCTGAAGCA TCCCCTGGAC CTCATGATTC TGACTACGGT GAGACACTTA AAACTTGCTG
TCTAGAGAAA TGTTTTCAAG AGCTGTATTG TGAGCTATGT AGACAGACAT TTGTCATATC TTAATTCAAA TTTGTTGGTA
ATGCAGCTTT TAAGGAGTTT ATAGAGCTAA TGAAGCAAGG AAAAAACAGA ACAAAGGAAA GTCTACCCGA ATTATCTGCA
CTGCATAGCA GTTGAAGCAT GCTGTTCTCC TCTGGGCAGA AAGAATAAAA GCATCTGCTA AGAAATTATG AGTGTCTATG
ATTTTGTAGA TGAGTTTGTT AAGGTTTTCT AGGGTTCAAT TAAGATTTTC TCTTAATTTT CTGTGCTAGT GTGAGTATAT
GGTCATGATT GTCATAAACC TCAATGAGGC TTAATGTTCT GCTACTCGCA GTCAGCATCA AACTTTGGTT GCTGCCTTTA
CTAATGTTAA GATTAATAAT TGTTTCCTTT TCAAAGATTT TGAGACTAA

>Vigan.02G204700.01
TGTTACCAGT TGCATGGAGG AAAAATGATT ATTAAAAAAG TAAAAAAGGG AAAAAGAAGG TGATGAAATT GCAAAATAAA
AACCTAGGTA ACGCGAGGCT GTGCACTACG ACAGGACTGG TTTCACAGAC ATACCAGTAA CGGTGCTGCA GTGACTGTCC
ATGGCGACAA AAGCTTTGTC TTTCGCTTTG TCCTTCAACG ACCTCACCAA CTGCTTCTCC TCCAGTCCGC CATCCGCCGC
CGCCGCAGCT AAAGTTTCCG TCTTTACCGT CAGATGCTCT TCGGGTAATG GAGAAAGACC TTGGAAAAAC TCAGATGCTA
GACTGGTTCT AGAAGATGGT TCAATTTGGA GAGCGAAATC GTTTGGTGCT TCAGGGACTC AAGTTGGCGA AGTTGTTTTC
AATACATCAC TGACAGGGTA TCAGGAAATT TTGACAGATC CTAGTTATGC TGGCCAGTTT GTGCTGATGA CAAATCCTCA
TATTGGGAAT ACTGGCGTTA ATTTTGATGA TGAGGAATCG ATGCAGTGTT TCCTTGCTGG TCTTGTAATT AGAAGTTTGA
GCATCAGTAC CTCTAACTGG AGATGTGCGA AGGCTCTGGG TGAATACTTA GCTGAAAGGA ATATCATGGG AATTTATGAT
GTTGATACTC GTGCAATCAC ACGCAGATTG CGGCAAGATG GCAGTCTTAT TGGTGTTTTG AGCACGGACA ATTCCAAAAC
AGATGAGCAA CTGCTTCAGA TGTCTAAGTC ATGGGACATT GTTGGTGTTG ATCTAATAAG TGGAGTATCA TGCAAAAGTC
CACATGAGTG GGTTGATAAA ACAAAGCAAC AATGGGAGTT TAGTTCCGGT AAAGTGGCAA GAGAGAATTT CCATGTGGTT
GCTTATGATT TTGGAATCAA GCATAATATT CTTAGACGCC TAGCATCTTA TGGCTGCAAA ATCACTGTTG TGCCATCTAC
ATGGCCAGCA TCAGAAACTT TGAAGATGAA GCCAGATGGG GTTCTTTTTA GTAATGGCCC TGGAGATCCA TCTGCTGTTC
CATATGCTGT TGAAACAGTG AAGAATATAA TTGGAAAGGT GCCTGTTTTT GGAATTTGCA TGGGCCATCA ATTGCTAGGC
CAGGCTTTAG GAGGTAAAAC ATTCAAGATG AAATTTGGTC ACCACGGAGG AAATCATCCT GTTCGTAACC TTCAAACCGG
CCATGTTGAA ATTAGTGCTC AGAACCACAA CTATGCTGTT GACCCTGCAA CACTGCCGGA AGGAGTGAAG GTTACTCATA
TCAATCTCAA TGATGGAAGC TGTGCCGGTC TTTCTTTCCC TGCACAACAA CTTATGTCTC TTCAATACCA CCCTGAAGCA
TCCCCTGGAC CTCATGATTC TGACTACGCT TTTAAGGAGT TTATAGAGCT AATGAAGCAA GGAAAAAACA GAACAAAGGA
AAGTCTACCC GAATTATCTG CACTGCATAG CAGTTGAAGC ATGCTGTTCT CCTCTGGGCA GAAAGAATAA AAGCATCTGC
TAAGAAATTA TGAGTGTCTA TGATTTTGTA GATGAGTTTG TTAAGGTTTT CTAGGGTTCA ATTAAGATTT TCTCTTAATT
TTCTGTGCTA GTGTGAGTAT ATGGTCATGA TTGTCATAAA CCTCAATGAG GCTTAATGTT CTGCTACTCG CAGTCAGCAT
CAAACTTTGG TTGCTGCCTT TACTAATGTT AAGATTAATA ATTGTTTCCT TTTCAAAGAT TTTGAGACTA A

>Vigan.02G204700.01
ATGGCGACAA AAGCTTTGTC TTTCGCTTTG TCCTTCAACG ACCTCACCAA CTGCTTCTCC TCCAGTCCGC CATCCGCCGC
CGCCGCAGCT AAAGTTTCCG TCTTTACCGT CAGATGCTCT TCGGGTAATG GAGAAAGACC TTGGAAAAAC TCAGATGCTA
GACTGGTTCT AGAAGATGGT TCAATTTGGA GAGCGAAATC GTTTGGTGCT TCAGGGACTC AAGTTGGCGA AGTTGTTTTC
AATACATCAC TGACAGGGTA TCAGGAAATT TTGACAGATC CTAGTTATGC TGGCCAGTTT GTGCTGATGA CAAATCCTCA
TATTGGGAAT ACTGGCGTTA ATTTTGATGA TGAGGAATCG ATGCAGTGTT TCCTTGCTGG TCTTGTAATT AGAAGTTTGA
GCATCAGTAC CTCTAACTGG AGATGTGCGA AGGCTCTGGG TGAATACTTA GCTGAAAGGA ATATCATGGG AATTTATGAT
GTTGATACTC GTGCAATCAC ACGCAGATTG CGGCAAGATG GCAGTCTTAT TGGTGTTTTG AGCACGGACA ATTCCAAAAC
AGATGAGCAA CTGCTTCAGA TGTCTAAGTC ATGGGACATT GTTGGTGTTG ATCTAATAAG TGGAGTATCA TGCAAAAGTC
CACATGAGTG GGTTGATAAA ACAAAGCAAC AATGGGAGTT TAGTTCCGGT AAAGTGGCAA GAGAGAATTT CCATGTGGTT
GCTTATGATT TTGGAATCAA GCATAATATT CTTAGACGCC TAGCATCTTA TGGCTGCAAA ATCACTGTTG TGCCATCTAC
ATGGCCAGCA TCAGAAACTT TGAAGATGAA GCCAGATGGG GTTCTTTTTA GTAATGGCCC TGGAGATCCA TCTGCTGTTC
CATATGCTGT TGAAACAGTG AAGAATATAA TTGGAAAGGT GCCTGTTTTT GGAATTTGCA TGGGCCATCA ATTGCTAGGC
CAGGCTTTAG GAGGTAAAAC ATTCAAGATG AAATTTGGTC ACCACGGAGG AAATCATCCT GTTCGTAACC TTCAAACCGG
CCATGTTGAA ATTAGTGCTC AGAACCACAA CTATGCTGTT GACCCTGCAA CACTGCCGGA AGGAGTGAAG GTTACTCATA
TCAATCTCAA TGATGGAAGC TGTGCCGGTC TTTCTTTCCC TGCACAACAA CTTATGTCTC TTCAATACCA CCCTGAAGCA
TCCCCTGGAC CTCATGATTC TGACTACGCT TTTAAGGAGT TTATAGAGCT AATGAAGCAA GGAAAAAACA GAACAAAGGA
AAGTCTACCC GAATTATCTG CACTGCATAG CAGTTGA

>Vigan.02G204700.01
MATKALSFAL SFNDLTNCFS SSPPSAAAAA KVSVFTVRCS SGNGERPWKN SDARLVLEDG SIWRAKSFGA SGTQVGEVVF
NTSLTGYQEI LTDPSYAGQF VLMTNPHIGN TGVNFDDEES MQCFLAGLVI RSLSISTSNW RCAKALGEYL AERNIMGIYD
VDTRAITRRL RQDGSLIGVL STDNSKTDEQ LLQMSKSWDI VGVDLISGVS CKSPHEWVDK TKQQWEFSSG KVARENFHVV
AYDFGIKHNI LRRLASYGCK ITVVPSTWPA SETLKMKPDG VLFSNGPGDP SAVPYAVETV KNIIGKVPVF GICMGHQLLG
QALGGKTFKM KFGHHGGNHP VRNLQTGHVE ISAQNHNYAV DPATLPEGVK VTHINLNDGS CAGLSFPAQQ LMSLQYHPEA
SPGPHDSDYA FKEFIELMKQ GKNRTKESLP ELSALHSS*