VIGGS:GBrowse

Vigan.02G199600.01

Basic Information:

Name:	Vigan.02G199600.01 Multiple alignment Variant Information
Position:	Chr02:26128417..26129444 (- strand)
Length:	1028

Functional Information:

Description:	Similar to Uncharacterized protein. [I1JY11, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO:	Molecular Function: DNA binding (GO:0003677)
InterPro:	NAC domain (IPR003441)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.48,0.04,3.76,2.37,0.05,24.22,8.50,13.45

Automatic updates:

Name:	KT031209 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max clone HN_CCL_4 NAC transcription factor (Glyma04g38990.1) mRNA, complete cds.
PubMed ID:	26268547 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001317670 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max NAC transcription factor 25 (LOC100170711), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:26128417..26128445 (- strand)
Length:	29
Type:	three_prime_UTR

Position:	Chr02:26128446..26128613 (- strand)
Length:	168
Type:	CDS

Position:	Chr02:26128706..26128974 (- strand)
Length:	269
Type:	CDS

Position:	Chr02:26129143..26129302 (- strand)
Length:	160
Type:	CDS

Position:	Chr02:26129303..26129444 (- strand)
Length:	142
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.02G199600.01 class=Sequence position=Chr02:26128417..26129444 (- strand)
GCAACTCACT CAATTTTTGA ATAATAATGA TAATAATAAA GTTTCTCTTT CTCTATCTCT AACTATTCTT CGCTATATAT
AGTGACAAAT CAAAACTGAA TTTTGGTGCC AAATTCCACT CTCAAATTCA ACAATACAGA AGATGGAAGA TGCAAGATTC
AACCTTCCTC CTGGTTTTTT CTTCTCTCCA ACTGATGAAG AACTTGTTCT TCACTTTCTC TATTGCAAGA CTTCTCTTAT
TCCATGTCAT CCCAACATCA TTCCAGACCT CGATTCTCGC CTTCATCCTT GGGAACTAAA TGGTATAATA TGAACTTCTT
TTCAATTTTT CAAAACTATA TATATATATA TATATATATA TATATATATA TATATATATA TATACACACA CACACACATT
GTATATGATA TATAAGAATG ACATGGCCAT TTGTTGTGTA TTCATGAATG CATGTGTTTA ATTTATGCAG GTAAGGCTTT
GTTAAGTGGG AATCAGTACT ATTTCTTTAC CAAAGTGAAT GAAAACAGAA CAACGGAAAA TGGGTGTTGG AAGGAAATAG
GTGTGACGGA ACCTATATTT TCAACTTTTG ACAAGAAAGT GGGAACGAAG AAGTACTTGG TATTCCACAT TGGTGAAGCT
CCACATGTTA CTGAAACCAG CTGGGTAATG CAAGAATATA ATATATGTTC TTCTGGGTTT GGCACTGCGT CCTGTAGAAG
TTCTAGGAGA CGAAAACATG TAAGTGACTT TGTTTAATTC ATTTGTTAAG CTAATTACAG GAGAGATTAT TTTCTATTAA
TATGTTAATA TTGTTGTTGT CCCTGACACA GGATCAAAGT TTGAGCCAGT GGGTTTTGTG CAGAGTGTAC GAGAAGATGA
GGTCTGAAGG TGTAAACTGC TATAGCGATG ACGATGAGAG TGGATCAGAG CTTTCATGGT TAGATGAAGT TTATCTGTCG
TTGGATGATG ATCTTGATGA AATTGGCATG CCAAATTAGA TCGAATATTA TTTTATACTG ATGTTAAT

[show][hide][copy]TRANSCRIPT

>Vigan.02G199600.01
GCAACTCACT CAATTTTTGA ATAATAATGA TAATAATAAA GTTTCTCTTT CTCTATCTCT AACTATTCTT CGCTATATAT
AGTGACAAAT CAAAACTGAA TTTTGGTGCC AAATTCCACT CTCAAATTCA ACAATACAGA AGATGGAAGA TGCAAGATTC
AACCTTCCTC CTGGTTTTTT CTTCTCTCCA ACTGATGAAG AACTTGTTCT TCACTTTCTC TATTGCAAGA CTTCTCTTAT
TCCATGTCAT CCCAACATCA TTCCAGACCT CGATTCTCGC CTTCATCCTT GGGAACTAAA TGGTAAGGCT TTGTTAAGTG
GGAATCAGTA CTATTTCTTT ACCAAAGTGA ATGAAAACAG AACAACGGAA AATGGGTGTT GGAAGGAAAT AGGTGTGACG
GAACCTATAT TTTCAACTTT TGACAAGAAA GTGGGAACGA AGAAGTACTT GGTATTCCAC ATTGGTGAAG CTCCACATGT
TACTGAAACC AGCTGGGTAA TGCAAGAATA TAATATATGT TCTTCTGGGT TTGGCACTGC GTCCTGTAGA AGTTCTAGGA
GACGAAAACA TGATCAAAGT TTGAGCCAGT GGGTTTTGTG CAGAGTGTAC GAGAAGATGA GGTCTGAAGG TGTAAACTGC
TATAGCGATG ACGATGAGAG TGGATCAGAG CTTTCATGGT TAGATGAAGT TTATCTGTCG TTGGATGATG ATCTTGATGA
AATTGGCATG CCAAATTAGA TCGAATATTA TTTTATACTG ATGTTAAT

[show][hide][copy]CDS

>Vigan.02G199600.01
ATGGAAGATG CAAGATTCAA CCTTCCTCCT GGTTTTTTCT TCTCTCCAAC TGATGAAGAA CTTGTTCTTC ACTTTCTCTA
TTGCAAGACT TCTCTTATTC CATGTCATCC CAACATCATT CCAGACCTCG ATTCTCGCCT TCATCCTTGG GAACTAAATG
GTAAGGCTTT GTTAAGTGGG AATCAGTACT ATTTCTTTAC CAAAGTGAAT GAAAACAGAA CAACGGAAAA TGGGTGTTGG
AAGGAAATAG GTGTGACGGA ACCTATATTT TCAACTTTTG ACAAGAAAGT GGGAACGAAG AAGTACTTGG TATTCCACAT
TGGTGAAGCT CCACATGTTA CTGAAACCAG CTGGGTAATG CAAGAATATA ATATATGTTC TTCTGGGTTT GGCACTGCGT
CCTGTAGAAG TTCTAGGAGA CGAAAACATG ATCAAAGTTT GAGCCAGTGG GTTTTGTGCA GAGTGTACGA GAAGATGAGG
TCTGAAGGTG TAAACTGCTA TAGCGATGAC GATGAGAGTG GATCAGAGCT TTCATGGTTA GATGAAGTTT ATCTGTCGTT
GGATGATGAT CTTGATGAAA TTGGCATGCC AAATTAG

[show][hide][copy]PROTEIN

>Vigan.02G199600.01
MEDARFNLPP GFFFSPTDEE LVLHFLYCKT SLIPCHPNII PDLDSRLHPW ELNGKALLSG NQYYFFTKVN ENRTTENGCW
KEIGVTEPIF STFDKKVGTK KYLVFHIGEA PHVTETSWVM QEYNICSSGF GTASCRSSRR RKHDQSLSQW VLCRVYEKMR
SEGVNCYSDD DESGSELSWL DEVYLSLDDD LDEIGMPN*