GBrowse Details

Vigan.02G196200.01

Basic Information:
Name: Vigan.02G196200.01
Multiple alignment
Variant Information
Position: Chr02:25150505..25155173 (+ strand)
Length: 4669
Functional Information:
Description: Similar to Superoxide dismutase. [V7AZE6, Phaseolus vulgaris]
GO: Biological Process: superoxide metabolic process (GO:0006801)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: superoxide dismutase activity (GO:0004784)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Manganese/iron superoxide dismutase (IPR001189)
Manganese/iron superoxide dismutase, N-terminal (IPR019831)
Manganese/iron superoxide dismutase, C-terminal (IPR019832)
Manganese/iron superoxide dismutase, binding site (IPR019833)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:201.92,234.81,114.75,86.13,125.16,152.48,216.13,80.72
Arabidopsis thaliana homolog: AT3G10920.1
Automatic updates:
Name: BT092642 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-11M24 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248137 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MnSOD (LOC100101896), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:25150505..25150660 (+ strand)
Length: 156
Type: five_prime_UTR
Position: Chr02:25150661..25150979 (+ strand)
Length: 319
Type: CDS
Position: Chr02:25151638..25151684 (+ strand)
Length: 47
Type: CDS
Position: Chr02:25151769..25151894 (+ strand)
Length: 126
Type: CDS
Position: Chr02:25152006..25152062 (+ strand)
Length: 57
Type: CDS
Position: Chr02:25153169..25153246 (+ strand)
Length: 78
Type: CDS
Position: Chr02:25154736..25154828 (+ strand)
Length: 93
Type: CDS
Position: Chr02:25154829..25155173 (+ strand)
Length: 345
Type: three_prime_UTR

>Vigan.02G196200.01 class=Sequence position=Chr02:25150505..25155173 (+ strand)
ATAAATTAAT CATATAATAT GTATTAAATA CGGGAACATA TGTATTACTA GCATTTTATT TTGTGACAAA ATATTTGATT
TATAATTCCA TCCACTCTGC TGTCACCGAA TCTCCTTCAT TTAGGTGTGT CGCAGAAGGT CTCCATATCT TTCCCGATGG
CTGCGCGAGC CCTATTGACC AGAAAAACCC TAGCATCGGT GCTCCGCAAT GACGCGAGGC CTCTCGGAGT AGGCGCAGCG
GTGGCTACTC ATTCCCGCGG TTTGCATGTT TACACGCTAC CTGATCTGGA CTACGACTAT GGCGCACTGG AGCCAGCCAT
CAGCGGTGAA ATCATGCAGC TCCACCACCA GAAGCACCAT CAGACTTACA TCACCAACTA CAACAAGGCT CTTGAGCAGC
TCCAAGATGC CGTTGCCAAG GCCGATTCCT CTGCCGTCGT TAAGCTCCAG GCCGCCATCA AGTTCAACGG CGGAGGTCTG
CTTCCCCTTT CTCTTTCTTT TTCGTTTCTT CTTTTAGTTT TGGTTTATCG AATGCTGAAT TACGGCGACT GCGTGATTTG
TTCATTGAAT TAATATCGAG TCGTGAATAG TTGACAGTGG ATTATTTAGT TTGTTGTGTT GTGGATGATA AGTAATTGGC
CTTTGTTGAT GTAATAAGTC AGGTGTAAAC TACAGGCAGG GGAGTGGGGA TTTGCTTAAT ACGCCGCTGT GATTTTGGTA
GTACTTAGTG AAAGTAACGT ATTGTATTGT ATCCTAGGCA TTGAGGCACA GATGCTTAAA ATGACGACCA ATCCGTTTGT
TTCGTACTCG AACGAACACA ATTTTTATTT TACCCAAATG CAGTAGTTGT GTAACATGGA TCTTTGAGTG CTTGTGTGTG
TTTCCCAAAA TTTTATTGTT GTCATTCTGC TTGGAATCCG AAGGGGGTGG TTGGTGTGTA GCATCTATAC TAAGATGGAT
TGGTTGATGA GAATGAATAG TGGTTGCATA TTTTTTCATA TTTTACTCTT TGTGTGAGAA ATTATGCCTG GTTTAAGAAT
GAACCAAACA GACTTTTGAG TGATGGAGCC AGGCTATATC TTCCATGGTT TTTAAAGTTA TCTAAATGTA CAACTAAGGA
TCATTTCTTG CAGGTCATAT CAACCATTCT ATTTTCTGGA AAAATCTAGC TCCTGTTCGT GTAAGTTTGT ATCTTTATCC
TATTTTTTGG ATGTATTTGG TCTTTGGTAG TCTTTTACCT AATAAAACTT CTCCCCTTTT GTAGGAAGGA GGTGGTGAAC
CACCGAAGGG TCCACTGGGA TGGGCTATTG ACACGCATTT TGGCTCTTTT GAAGCATTGA TACAAAAAGT TAATGCAGAA
GGTGCAGCAC TGCAGGGGTC TGGTTGGGTG GTGAGTTGAT CAGATTCTGA AATTCCCAGA ATATTTTCGT TCCTTGCATT
AATGTCTTGG TCGTTGTTTG AAATGTTGCT TCCTTTTGCG TATTCTGTAC TGCCTTGCCA GTGGCTTGGT CTGGACAAAG
AGTTGAAGAG GCTTGTAGTT GAAACCACTG CCAACCAGGT AAACTGACCC TTCCATCGTC ATTTCCCCTC ATCATTTTCT
ACATGATCCT AATAGGCTTC ATAGATCAGC AGTAACATTA AAAAAGAAAA TAAATGAAAG TAGTCTTTTG GTCTGGCCTC
CAATTCTCCC TTTTTGTATT TCTTTTGTAT CACTTGTAAG TTGTCACACC TTTCAAGATC TTTTACTTGA TAGTCAACAG
TCAAAGAATA CTTCACCAAA CAATACTTGT AGTAAGGCTT TGTAAATTCC TATTTCTCTA AGTAAAGAAT ATCTTGCCTG
GTGGACAAAA ATAAAATGTA TTATATGCAT ATCAAACTAT ATTTACCTGT GTAAACCAAC TGTGTTTATT TGTCCTTCCA
TTCGTTTTTA ATCTCTTTTT CATGTTCATT TTCTCTTGTC ATTTATTGCT GAGACAGAGC AACCTCTCAA GTTCTCATTT
TTTAAGTCTG ACCACGGGAG GACCTGCAGT CACCTGCCGC CATATCTTAT CAGTTTTCCC CCCAATTCAT CTCTTTAAAC
TGTTGATTCT CTTTGACTGC CGTTTTATTC TTTTCTGATC TGGCTATCAA ACTGCTTCTT TCAATTTATT AGTCTAGACC
CAACCTCCAA AACACCAACA GATCTCAGGT GAACTTTTTC TCTCTAGCTC TATTTAATCT TGCTCTCTCT GAATCAATGG
TTGACTTATA GTTGAAGGTT GCAGAAGTAA TTTGGCCTGT TTTCATTTTT TCTAGATCTG TTAAGACAAG TTTCAGTCAT
GTCAGTTCAG TTCTAATGAA GTTTTAGCAA TTAATGATTA CAGCGACCTG CTACGACATT TTAAAATAGC CAGGACTTAA
TTCTAAATTA ACAAAAAAGT GTTGGGACCC AATTAATATT GAGTGACATT GTTGGAATGT GGAGGACTTC TTCAAATTTT
AATGGTGTTC AGATGTATAA ATATTGCTAT AGTGAAAACT ATAGATAAGA GAAGGAACTA GTTAGAGTTT TTTGTCTTTT
CTCGATCCTC ATACTCATTT TTTTAGCTTT AGTGAACCAT GTTTATTCTC TCTGCATATA TGTCTATTGA TTTTCACATG
TACTTATGAA CATTTTGTAT GCAGGACCCA CTGGTTACCA AGGGACCAAA TTTGGTTCCG TTGCTTGGCA TTGATGTTTG
GGAGCATGCG TACTACTTAC AGGTAGAATT GACTTGGTGA TCCACTACTG ATTGCATGGT TGCTGTAATA TTGTTATTTG
AATCCTGTGC ATATTTTCAG TTTGGTGGTT ATGACTTGTG AGATGCAAAG GGTGGTCAAA ATTTGATTCT TGGTTTCCAA
ATGGAATTTC AAAATAAGAT ATGTTCAGTT AAAATAGAAT TGAATTATTT TTATCTCAAT TTTTAAGCAC TTTTTTAGAG
CTTATTTCAT CCCAACACTT TTATCTTAAT AAAATGCCAA TTACAAAGAA TTGGTTTCCT AACATAGTTA ATATTCTGAC
TTATTTTCAT CCTGAAATTT GACCTTCAAA CGTTCTTCTA GAGCTTCTAT ATTTATTTGC ATTTTGATAG ATGATATTAT
TGATTGGTTT TAGTGAATCA AAATGTGAAT TTAGCGTGAA CATAAACTAA TAATAGAGAC AAGTAGAAAA TGATGCAATA
GCTTTCTCCT AAATCTCAGA AGTTTATGAT TAACTGCTGT TAAGATCTCT TATTGATTAG GGATAATAGT CCTTATAAGA
ATTGGGTAAT CCTCCCCCGT TCTTGGGCTA GGTTTTGCAA TTGGAAGACT TTGTACAATT TTAGTCACTA TGTTATACTT
ATGTAATTGT GATAGTCTTC TTTTATCAAG AAGTTGATCA ACACTCTCCT CTTCTAAAAC ACACACGAAA AGACACAAAA
CAGTATGTAT ATTATTGTTG TATGAATGAA CCAATGTACA AAGAATTACA CCAGAAAAGC CCTCTCTCCC TCCACTGGAA
CAAATATCCC ATCTATACCC AAATGTACAA AAGAACTAAC TAACTCCCTG TACAATACAT CCCCTATTTA TAGTATTTCC
TCCCCTTCAC ACTTCCTGAC TAACGGTCAA CAACCTTTCC CGCTTTCTAA ACTCCTTACC CTGCACTCAT TTCCTCTTCT
TTCTTTCATA TACCTTTAAT GCTCTATCAA ATTGCTCGTA TTTAGTCCTC AGTTTGTTTA TTTTCTTGAA GCAAAGTCTT
AGTAGTTTTT CAGCAGTCCA AATAAAGCCC CTCTTCCTAA AATTCCGTCC AATAATTAAC AGAAATGTAG AGGTATGAAA
AAACTTTCAA ATGTATAAAT TAGCAAAGGA AGACATGTAT AAAATGCAGC AAAGCCATTT TTTTGTTTTT TTATTATCAA
AGTAAAACAA AAGCTTAGTG AAGCTTATAA TTTCAAGAAT TCAGGTAAAG TCACAACTTA CAATGGAATA TTCATTTTTC
GTCCTTTATG TTAGTTAGGA ATTGGAATCC ACACACCCAC CGTAGATTAG AATATTCACA TACTCACAAG TTTAGAAATA
AATTAATTTT TCGTCACGTA CAATATGTTG AAACTTTTAT CGTGCTATTA TTTGGCAATC AGGAGGAAAA GGTTACACGC
TTTCCCAGAT TCCTAGATGC ATATCCGTTG TTAAAAATAA TTCTGATGTA TGCTTGTTTT TCTTAATGCA GTACAAGAAT
GTTAGACCAG ATTATCTGAA GAACATTTGG AAAGTTATTA ATTGGAAATA TGCTAATGAT GTGTATGAGA AAGAGAGCTC
TTAGTCTGAA AGTGCTGAAT TATATGGTAC CTGAGATGAC AGATTTCCAG CAAGGTGAGA AAAGTGGAAT AAAATGATGT
AATGTAGAAG ATAACACTAA CTATTTATAC AGTTGTGACA AAGAACCTCG AGCTTTTATG GCTGCATTGC TCATGTCTTA
TGGATTTTCT GATGCTCTGT TAAGGTGATA TTTGTGTCCG TCGATGTATA TTTTTTGCTT CTTGGGTGTG ATCCTTTTTG
TCGAATAAGT AGTATAATTA TGAAATCCAA GCCCCGTATT ATTTGTTGGG TGAACAAGTG GGAGTTATTT AGTTGCGATT
ATTCATTAGA AAATTAAATT TAAAAGAAA

>Vigan.02G196200.01
ATAAATTAAT CATATAATAT GTATTAAATA CGGGAACATA TGTATTACTA GCATTTTATT TTGTGACAAA ATATTTGATT
TATAATTCCA TCCACTCTGC TGTCACCGAA TCTCCTTCAT TTAGGTGTGT CGCAGAAGGT CTCCATATCT TTCCCGATGG
CTGCGCGAGC CCTATTGACC AGAAAAACCC TAGCATCGGT GCTCCGCAAT GACGCGAGGC CTCTCGGAGT AGGCGCAGCG
GTGGCTACTC ATTCCCGCGG TTTGCATGTT TACACGCTAC CTGATCTGGA CTACGACTAT GGCGCACTGG AGCCAGCCAT
CAGCGGTGAA ATCATGCAGC TCCACCACCA GAAGCACCAT CAGACTTACA TCACCAACTA CAACAAGGCT CTTGAGCAGC
TCCAAGATGC CGTTGCCAAG GCCGATTCCT CTGCCGTCGT TAAGCTCCAG GCCGCCATCA AGTTCAACGG CGGAGGTCAT
ATCAACCATT CTATTTTCTG GAAAAATCTA GCTCCTGTTC GTGAAGGAGG TGGTGAACCA CCGAAGGGTC CACTGGGATG
GGCTATTGAC ACGCATTTTG GCTCTTTTGA AGCATTGATA CAAAAAGTTA ATGCAGAAGG TGCAGCACTG CAGGGGTCTG
GTTGGGTGTG GCTTGGTCTG GACAAAGAGT TGAAGAGGCT TGTAGTTGAA ACCACTGCCA ACCAGGACCC ACTGGTTACC
AAGGGACCAA ATTTGGTTCC GTTGCTTGGC ATTGATGTTT GGGAGCATGC GTACTACTTA CAGTACAAGA ATGTTAGACC
AGATTATCTG AAGAACATTT GGAAAGTTAT TAATTGGAAA TATGCTAATG ATGTGTATGA GAAAGAGAGC TCTTAGTCTG
AAAGTGCTGA ATTATATGGT ACCTGAGATG ACAGATTTCC AGCAAGGTGA GAAAAGTGGA ATAAAATGAT GTAATGTAGA
AGATAACACT AACTATTTAT ACAGTTGTGA CAAAGAACCT CGAGCTTTTA TGGCTGCATT GCTCATGTCT TATGGATTTT
CTGATGCTCT GTTAAGGTGA TATTTGTGTC CGTCGATGTA TATTTTTTGC TTCTTGGGTG TGATCCTTTT TGTCGAATAA
GTAGTATAAT TATGAAATCC AAGCCCCGTA TTATTTGTTG GGTGAACAAG TGGGAGTTAT TTAGTTGCGA TTATTCATTA
GAAAATTAAA TTTAAAAGAA A

>Vigan.02G196200.01
ATGGCTGCGC GAGCCCTATT GACCAGAAAA ACCCTAGCAT CGGTGCTCCG CAATGACGCG AGGCCTCTCG GAGTAGGCGC
AGCGGTGGCT ACTCATTCCC GCGGTTTGCA TGTTTACACG CTACCTGATC TGGACTACGA CTATGGCGCA CTGGAGCCAG
CCATCAGCGG TGAAATCATG CAGCTCCACC ACCAGAAGCA CCATCAGACT TACATCACCA ACTACAACAA GGCTCTTGAG
CAGCTCCAAG ATGCCGTTGC CAAGGCCGAT TCCTCTGCCG TCGTTAAGCT CCAGGCCGCC ATCAAGTTCA ACGGCGGAGG
TCATATCAAC CATTCTATTT TCTGGAAAAA TCTAGCTCCT GTTCGTGAAG GAGGTGGTGA ACCACCGAAG GGTCCACTGG
GATGGGCTAT TGACACGCAT TTTGGCTCTT TTGAAGCATT GATACAAAAA GTTAATGCAG AAGGTGCAGC ACTGCAGGGG
TCTGGTTGGG TGTGGCTTGG TCTGGACAAA GAGTTGAAGA GGCTTGTAGT TGAAACCACT GCCAACCAGG ACCCACTGGT
TACCAAGGGA CCAAATTTGG TTCCGTTGCT TGGCATTGAT GTTTGGGAGC ATGCGTACTA CTTACAGTAC AAGAATGTTA
GACCAGATTA TCTGAAGAAC ATTTGGAAAG TTATTAATTG GAAATATGCT AATGATGTGT ATGAGAAAGA GAGCTCTTAG

>Vigan.02G196200.01
MAARALLTRK TLASVLRNDA RPLGVGAAVA THSRGLHVYT LPDLDYDYGA LEPAISGEIM QLHHQKHHQT YITNYNKALE
QLQDAVAKAD SSAVVKLQAA IKFNGGGHIN HSIFWKNLAP VREGGGEPPK GPLGWAIDTH FGSFEALIQK VNAEGAALQG
SGWVWLGLDK ELKRLVVETT ANQDPLVTKG PNLVPLLGID VWEHAYYLQY KNVRPDYLKN IWKVINWKYA NDVYEKESS*