GBrowse Details

Vigan.02G170900.01

Basic Information:
Name: Vigan.02G170900.01
Multiple alignment
Variant Information
Position: Chr02:17109194..17114374 (+ strand)
Length: 5181
Functional Information:
Description: Similar to stomatin-like protein 2, mitochondrial-like. [XP_004502783.1, Cicer arietinum]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Band 7 protein (IPR001107)
Stomatin family (IPR001972)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:21.13,24.13,16.42,14.14,37.57,20.34,13.72,13.04
Arabidopsis thaliana homolog: AT4G27585.1
Automatic updates:
Name: NM_001252947 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max stomatin-like protein 2-like (LOC100809006), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255339 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max stomatin-like protein 2-like (LOC100776545), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:17109194..17109379 (+ strand)
Length: 186
Type: five_prime_UTR
Position: Chr02:17109380..17109525 (+ strand)
Length: 146
Type: CDS
Position: Chr02:17109618..17109864 (+ strand)
Length: 247
Type: CDS
Position: Chr02:17110221..17110370 (+ strand)
Length: 150
Type: CDS
Position: Chr02:17111209..17111266 (+ strand)
Length: 58
Type: CDS
Position: Chr02:17111354..17111446 (+ strand)
Length: 93
Type: CDS
Position: Chr02:17111629..17111727 (+ strand)
Length: 99
Type: CDS
Position: Chr02:17112631..17112722 (+ strand)
Length: 92
Type: CDS
Position: Chr02:17113644..17113703 (+ strand)
Length: 60
Type: CDS
Position: Chr02:17113795..17114082 (+ strand)
Length: 288
Type: CDS
Position: Chr02:17114083..17114374 (+ strand)
Length: 292
Type: three_prime_UTR

>Vigan.02G170900.01 class=Sequence position=Chr02:17109194..17114374 (+ strand)
GAATTGTTAA TATATCGGAT CCAAAAAAGA ATTACCTGCT CATCACGAAA TTAATGTGTA AGATCTGACC ACACTAAAAA
AAATAGAAAG AAGAGGTTTT ACTAGGGTTT TATTACAAGC AAAGAGAAAG AATTAACAAG AGGAAGAAAA TTGAGGCTCA
AAAGAACTGA ACTCCGGAGT ACGAAAATGG CGACCATTTG GAAAACTAAC TCCGCGAGAA ACGCAGTGCG TTTTTTGAGC
CAATCGCTGG CTTCAACTAG CCGCACTCCT TCGATTCCCC CTCGTTTTTC CTCCGTTCGA TACCTCCGCA CTGGTCGCGA
TCCTAGTTCC AGGTTGGTTT CCTTGCTGCT AGGTTTCGCT GTCGAACAAT TATTATTTAT TTATTTATTT TTTTCATTTT
TAATGTTGAG GTTTTGTTGA GTAGGACCTA TGATATTATT CCGCCTGTGA ATTGGGGGAT TCGGATTGTG CCGGAGAAGA
AGGCGTTTGT GATTGAGCGA TTCGGGAAGT ACGTTAAGAC TCTTCCCTCT GGAATCCATT TTTTGATTCC TTTCGTGGAT
CGTATCGCTT ATGTGCATTC GCTCAAGGAG GAGGCTATTA ACATTCCTGA CCAGAGTGCA ATTACCAAGG ACAATGTCAC
CATCCTCATC GATGGCGTGC TTTACGTCAA GGTTTCTGGT TTTTCTTTTT GTCTATGCAT TCGGTTATTG TATTTGAGTG
GTCAGTGGCG TTGAACTATT TTTTTTGTTA AATATCTCAA TGAGCCATTC TGGGATAAAA GTTAAGCAGG TAAAGTAAAT
TGAAATTCTC ATATAGGTTA AAATAAATTT GTGTATAAGT TGATTTATAG AAATGATTTC GTTTAGCTTC TACAATAGCT
GATTTTTAGT TTATGTATAA GCTAATTTGA ACTTATGGGG AGTGTTTGGT TCATTTTGAC CTTTCTATTT TCTTCTTCGA
GAAGTTTGTC CAGACCAGAT CATATTTTTA TTTATTTGTT TATTAGGGTT TTTTTTTGGG AGTGCAGATT GTGGATCCTA
AGCTCGCGTC TTATGGAGTG GAGAATCCCA TTTATGCTGT CATTCAGCTG GCACAAACGA CAATGCGTAG TGAGCTTGGT
AAGATTACTC TTGACAAGAC CTTTGAAGAA AGAGACACAC TCAATGAAAA GATTGTGGTG AGTTTAGTTA TAAGTTCTTT
GAATTTGTTG TCTGTGCTGG TCATTTATCC CCCTTTACTT ACATGAGGAA GCATTTTAGA TACTTTAAAT TGAAGTCACG
CATAAAATCT TGTTGGTGAA GCCTTCTATA AAGCAGAAGA GAAAATAGTT GTGAAAAGTA AAGACATGTC TCTTTAGATG
GAGCTGTGCA AATTGTGGAA AGGATGATCG TGTACCTTAA ATTTCGTAGT CCTATACCTA CGGGGGTTGG GTCTAATAGA
AGCGGCTAGT TCCTCATAAC ATGGCTAAAT AAGGTTTGAA TTGAATCTTT GCTGGGAGAG ATATTCACAT TTAGTGTGAG
GTCTTGTTTT CGATAGGATG GTCTCAAAAG GAGTGACCTG TAAGAAACAA AAAAAAAAAT TCCCAGTCCT ATTTCAATCC
AGTTATATGT AGGAAAGAAA AAGAGAAACC AGACAATAGC TAAAGATGAA AATTTTGTAG TGGTTGTGCT GGTTGGTGAT
ATTGGTTTCT TTCCTACTGT AATCACGTGC AACGTTGCCT AAGTCCTTAA CTTATGATAA CATAGGATTC ATTTTTTACA
ATTGGTTACA GGTTTATATA TTAGACTTAT TTAGAAAGGT TGGCATAATG AGCATGATTT CTAAGCTAGC TTGGTGCCAA
GGAATTAGGA CTGAACAATG ACAGGAAGAT ATAATAAACA TGATCTAACA GCTATGCATA GCCCTTCCAT AAGAGTTAGT
CCTGTGTTTT CTTTCTGACG TACCCTAAAA ATTGTACTGA CAGAGTTAGT CTTGTGTTGA CCATATAGTG ATTAATTGTG
TGACAATTAT TGCAGGAGGC CATTAATGTG GCTGCAAAAA GTTGGGGTCT GGAGTGCCTT CGATATGAAA TAAGTAAGTT
TTGGCAGTGC ATAAATAATT TTACTATGTT TTTTACTTGA TGGTTTCTTT GTAATTCTTT TTGCGATTTT CCTTCTGTAG
GGGATATCTC TCCTCCACGT GGAGTGAGAG CAGCTATGGA GATGCAAGCA GAAGCAGAAA GAAAAAAGAG AGCTCAAATT
CTTGAGTCTG AAGGTAATCA ATTTGATATT CCAAATCTTC GAATGCTCAG TTTATACTTT TTTGCATTAT TTTTCATCAT
GAAATTAACT TTAGTATCCA TATCATTCAA CTGAAAGGGG ATCATGTTCC TGAGCCAACA ACTACCTGTA GTCTCTAAGT
TTTACTGGTA TTGATATCCT ATAGTTATTA AACAGGAGAA AGACAGGCTC ACATAAACAT TGCTGATGGA AAGAAGAGTT
CAGTGATCTT AGCATCAGAA GCTGCAAGGA TGGATCAAGT TAACAGAGCT CAAGGTTATT TATATCTTGA TAACTTAGTT
CCAACTTCCA TTTATGTTTC AATAGTAATC TTAAAGATAA GCTTTGATGT CTAGTGAACA TGATGTGATA AGATATCCCT
TCATATTATT TCAAACTGGC CTTTATATCA AGGTCATTTC CTATGTGCAT TCTCTTGTTG AGAGGAATGA TCTTATGCAC
TTTCTAGATG ATAATGAATT GCAGTTTGAA TGATAGTCTA ATGAATATTT GATTTGTGTT TTATTTAATA ACATGTCATG
ATTAATGATA CAATCCTATC CAGGAAAGAG TACGATTGCA TAAGACAGGG ATGAGATGCC ACATTCTAAT AGATTGATAA
GTCAAGTGAA TCTTTGATAA GAATCGTTCT AATCCAAGAA TCACGAGAAT CTCTTTCAAA GAATGCAACC AAATGTGCCC
GAAAAAGAAT AGCAGAGCAA ATGAAGCATG CCCAAAAGTA AACCAACCCC TTGGACTGCT ACAAGAAACA TCATCTGATT
TCAAAGTAGC ACGTCTAGCA TATTTTTTGA AAGTAGCGGG ATCACTATAA CTTACTCCAT TAAGCTCACC ACCATAGAAC
TCAACAGTTA CACCTACTTG TTCGACAATA TATAGGTACA TAAGTTTAAG AAAATCTACA AACCCTAACA AAAAGTCTTA
AGCTCAAAAC ACATAAGAGA AAACTAAAAT TACAAACACA GACTTTCTTC TAGTAAGACT CGCTCGCCTA AAAACAGAAG
CTGATTCATC CAATAAATTT AATAGTCTGT AAATTTAAAA TAAAATTACA ATTTATTTAA TTTTTTAAAT TATTGTTTAA
TTGTGCTCAT GATCTTCATA TATTGGTTGA TTTGATATCT TCAAAACCTA GTGATTAGCA TTCTTCTTCT TCTTTAGGTG
AGGCTGAAGC CATCCTATCT AAAGCAAAAG CAACAGCTGA GGGATTAGCT CGTGTCTCAA CTGCCCTAAA AGAAAATGGA
GGACCTGAGG TGAGGACCTT CATGTTCATA TTTTGTATAT CACGGCCAGT ACTAGCATTT TATATTGATT AGACTTGAGT
GTAAAATAAG AGGCTTAATT GATCCTTCTC GTAATATTTT ATTTATAAAA ATAAATTGAT ACAAGAATAT ATGATAATTA
GGATAACCTT AGACACAATA TAATCATGAT AGGATAACCT AGACACAATA TAATCATGAT AAATAGGGTA ACCTAGACAC
AATATAATCA TGATAAATAG GATAATTCTA GACACAATAT AATCATGATA GATAGGGTAA CCTAGACACA ATATAATCAT
GATAAATAGG ATAATCCTAG ACACAATATA ATCATGATAG ATAGGATAAC CCTAAACATA ATATAATCAT GATAAATAGG
GTAAATATTC TAACCATTAG TTTAAAAAAT ATTTCTTGTT ATACGTTGCA CATATAAATT TCTTTTATCC ATATCGCTTT
TGTAATTTTC TAGCTTTGTT TAGTTTAGAT TGGGTTGGTC GAAAAAGTGT ATGATGAAAA CTTCTTGGAT TAATTTATTT
CTACGGTAAC TCTGATGCTT GATATTTTTT ATTTTTGGAT TGCCATTCCA GCCATATAAT ATGTCATAAC TGGGAGACTT
GTTTTGTTGC TAAACCAGAT TATTGATTTT TCTTTCCTAG TCAGTTTTCA ATACAAGTTC TGATTGACTT TTTTATAGCA
TTTGATATCT TGAAGACAAT CAAACATGTT ACTGTCCATA TAAATAGGAT AGAAAGGTTT ATTAAGTTGA TGTTGGTTGA
TCATTGAAAA TGGGAGACAA ATGAGGTGGT GAATGTGGTA GATAAATTGC CTCTTAATTG GTACATCTGT TTGAGCCTTG
GTCCCTTGGA CTGACCGGCA AGGGAATATT ACTGTCATTT GATTTTGCAG GCAGCAAGTT TAAGGATTGC AGAGCAATAT
ATTCAAGCTT TCAGTAACAT AGCCAAGGAG GTAATATAGC CCATAAACTG ATTATTTCTT GCATTGCATA ATTTGTTTAG
TTCGAAAATT GTTTTTCATT TCATCTTTAC TTTTTCATCA GGGCACAACA ATGTTGCTTC CTAGCTCTGC ATCCAATCCT
GCTAACATGA TGGCCCAAGC GCTTACTATG TATAAAAGTC TGCTTGGTAA CGTTTCGAAT GATAATAAGC AGAATGGAAA
TATGCCCCTT TCAATATCAG GAAAATTAGA AGTAAATGAT GCCTCGGGAG AGATTAAAGA CAAGAGCTCC ACAACTGCTA
ATGAAAGTAA TGATATTCAA GATTATAGTG AAAAATCTAG ATTTCCATTT CCGAGGCCAC CGAGATTTCC ATTTCCGAGC
CCAGAATAGT TTTATTACTA TTTTCAAGAA TTCATATTTT TTTTAGCGTA TGGATGTTAC AGTAAACTGA ATTCGGACTT
TGGAGAGAAG AAAACAGAAA GTTTGAGTGG ACTTTCTTTA ATTCACTTTT GTGTTTCTTT CTTGAGGAAA TAATGGCTTA
TAATTTCGCA CCTGAGGAGT TATTTTTTGG TTTCGTTCAG TCACTAAGAA ATATAAGCTT GTCTGCCATC CACACCAGAA
TAAGGATCTT TTGTGTATAA TCCAGTTTCT AGATTCATCG AGATATAGAA CAGCATATAA G

>Vigan.02G170900.01
GAATTGTTAA TATATCGGAT CCAAAAAAGA ATTACCTGCT CATCACGAAA TTAATGTGTA AGATCTGACC ACACTAAAAA
AAATAGAAAG AAGAGGTTTT ACTAGGGTTT TATTACAAGC AAAGAGAAAG AATTAACAAG AGGAAGAAAA TTGAGGCTCA
AAAGAACTGA ACTCCGGAGT ACGAAAATGG CGACCATTTG GAAAACTAAC TCCGCGAGAA ACGCAGTGCG TTTTTTGAGC
CAATCGCTGG CTTCAACTAG CCGCACTCCT TCGATTCCCC CTCGTTTTTC CTCCGTTCGA TACCTCCGCA CTGGTCGCGA
TCCTAGTTCC AGGACCTATG ATATTATTCC GCCTGTGAAT TGGGGGATTC GGATTGTGCC GGAGAAGAAG GCGTTTGTGA
TTGAGCGATT CGGGAAGTAC GTTAAGACTC TTCCCTCTGG AATCCATTTT TTGATTCCTT TCGTGGATCG TATCGCTTAT
GTGCATTCGC TCAAGGAGGA GGCTATTAAC ATTCCTGACC AGAGTGCAAT TACCAAGGAC AATGTCACCA TCCTCATCGA
TGGCGTGCTT TACGTCAAGA TTGTGGATCC TAAGCTCGCG TCTTATGGAG TGGAGAATCC CATTTATGCT GTCATTCAGC
TGGCACAAAC GACAATGCGT AGTGAGCTTG GTAAGATTAC TCTTGACAAG ACCTTTGAAG AAAGAGACAC ACTCAATGAA
AAGATTGTGG AGGCCATTAA TGTGGCTGCA AAAAGTTGGG GTCTGGAGTG CCTTCGATAT GAAATAAGGG ATATCTCTCC
TCCACGTGGA GTGAGAGCAG CTATGGAGAT GCAAGCAGAA GCAGAAAGAA AAAAGAGAGC TCAAATTCTT GAGTCTGAAG
GAGAAAGACA GGCTCACATA AACATTGCTG ATGGAAAGAA GAGTTCAGTG ATCTTAGCAT CAGAAGCTGC AAGGATGGAT
CAAGTTAACA GAGCTCAAGG TGAGGCTGAA GCCATCCTAT CTAAAGCAAA AGCAACAGCT GAGGGATTAG CTCGTGTCTC
AACTGCCCTA AAAGAAAATG GAGGACCTGA GGCAGCAAGT TTAAGGATTG CAGAGCAATA TATTCAAGCT TTCAGTAACA
TAGCCAAGGA GGGCACAACA ATGTTGCTTC CTAGCTCTGC ATCCAATCCT GCTAACATGA TGGCCCAAGC GCTTACTATG
TATAAAAGTC TGCTTGGTAA CGTTTCGAAT GATAATAAGC AGAATGGAAA TATGCCCCTT TCAATATCAG GAAAATTAGA
AGTAAATGAT GCCTCGGGAG AGATTAAAGA CAAGAGCTCC ACAACTGCTA ATGAAAGTAA TGATATTCAA GATTATAGTG
AAAAATCTAG ATTTCCATTT CCGAGGCCAC CGAGATTTCC ATTTCCGAGC CCAGAATAGT TTTATTACTA TTTTCAAGAA
TTCATATTTT TTTTAGCGTA TGGATGTTAC AGTAAACTGA ATTCGGACTT TGGAGAGAAG AAAACAGAAA GTTTGAGTGG
ACTTTCTTTA ATTCACTTTT GTGTTTCTTT CTTGAGGAAA TAATGGCTTA TAATTTCGCA CCTGAGGAGT TATTTTTTGG
TTTCGTTCAG TCACTAAGAA ATATAAGCTT GTCTGCCATC CACACCAGAA TAAGGATCTT TTGTGTATAA TCCAGTTTCT
AGATTCATCG AGATATAGAA CAGCATATAA G

>Vigan.02G170900.01
ATGGCGACCA TTTGGAAAAC TAACTCCGCG AGAAACGCAG TGCGTTTTTT GAGCCAATCG CTGGCTTCAA CTAGCCGCAC
TCCTTCGATT CCCCCTCGTT TTTCCTCCGT TCGATACCTC CGCACTGGTC GCGATCCTAG TTCCAGGACC TATGATATTA
TTCCGCCTGT GAATTGGGGG ATTCGGATTG TGCCGGAGAA GAAGGCGTTT GTGATTGAGC GATTCGGGAA GTACGTTAAG
ACTCTTCCCT CTGGAATCCA TTTTTTGATT CCTTTCGTGG ATCGTATCGC TTATGTGCAT TCGCTCAAGG AGGAGGCTAT
TAACATTCCT GACCAGAGTG CAATTACCAA GGACAATGTC ACCATCCTCA TCGATGGCGT GCTTTACGTC AAGATTGTGG
ATCCTAAGCT CGCGTCTTAT GGAGTGGAGA ATCCCATTTA TGCTGTCATT CAGCTGGCAC AAACGACAAT GCGTAGTGAG
CTTGGTAAGA TTACTCTTGA CAAGACCTTT GAAGAAAGAG ACACACTCAA TGAAAAGATT GTGGAGGCCA TTAATGTGGC
TGCAAAAAGT TGGGGTCTGG AGTGCCTTCG ATATGAAATA AGGGATATCT CTCCTCCACG TGGAGTGAGA GCAGCTATGG
AGATGCAAGC AGAAGCAGAA AGAAAAAAGA GAGCTCAAAT TCTTGAGTCT GAAGGAGAAA GACAGGCTCA CATAAACATT
GCTGATGGAA AGAAGAGTTC AGTGATCTTA GCATCAGAAG CTGCAAGGAT GGATCAAGTT AACAGAGCTC AAGGTGAGGC
TGAAGCCATC CTATCTAAAG CAAAAGCAAC AGCTGAGGGA TTAGCTCGTG TCTCAACTGC CCTAAAAGAA AATGGAGGAC
CTGAGGCAGC AAGTTTAAGG ATTGCAGAGC AATATATTCA AGCTTTCAGT AACATAGCCA AGGAGGGCAC AACAATGTTG
CTTCCTAGCT CTGCATCCAA TCCTGCTAAC ATGATGGCCC AAGCGCTTAC TATGTATAAA AGTCTGCTTG GTAACGTTTC
GAATGATAAT AAGCAGAATG GAAATATGCC CCTTTCAATA TCAGGAAAAT TAGAAGTAAA TGATGCCTCG GGAGAGATTA
AAGACAAGAG CTCCACAACT GCTAATGAAA GTAATGATAT TCAAGATTAT AGTGAAAAAT CTAGATTTCC ATTTCCGAGG
CCACCGAGAT TTCCATTTCC GAGCCCAGAA TAG

>Vigan.02G170900.01
MATIWKTNSA RNAVRFLSQS LASTSRTPSI PPRFSSVRYL RTGRDPSSRT YDIIPPVNWG IRIVPEKKAF VIERFGKYVK
TLPSGIHFLI PFVDRIAYVH SLKEEAINIP DQSAITKDNV TILIDGVLYV KIVDPKLASY GVENPIYAVI QLAQTTMRSE
LGKITLDKTF EERDTLNEKI VEAINVAAKS WGLECLRYEI RDISPPRGVR AAMEMQAEAE RKKRAQILES EGERQAHINI
ADGKKSSVIL ASEAARMDQV NRAQGEAEAI LSKAKATAEG LARVSTALKE NGGPEAASLR IAEQYIQAFS NIAKEGTTML
LPSSASNPAN MMAQALTMYK SLLGNVSNDN KQNGNMPLSI SGKLEVNDAS GEIKDKSSTT ANESNDIQDY SEKSRFPFPR
PPRFPFPSPE *