VIGGS:GBrowse

Vigan.02G161300.01

Basic Information:

Name:	Vigan.02G161300.01 Multiple alignment Variant Information
Position:	Chr02:15514179..15515879 (+ strand)
Length:	1701

Functional Information:

Description:	Similar to Uncharacterized protein. [Q0GLD1, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
GO:	Molecular Function: DNA binding (GO:0003677)
InterPro:	Zinc finger, Dof-type (IPR003851)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:6.01,20.68,13.28,14.68,27.90,26.70,14.96,26.76

Automatic updates:

Name:	NM_001249848 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max Dof21 (LOC778114), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:15514179..15514419 (+ strand)
Length:	241
Type:	five_prime_UTR

Position:	Chr02:15514420..15514443 (+ strand)
Length:	24
Type:	CDS

Position:	Chr02:15514979..15515791 (+ strand)
Length:	813
Type:	CDS

Position:	Chr02:15515792..15515879 (+ strand)
Length:	88
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.02G161300.01 class=Sequence position=Chr02:15514179..15515879 (+ strand)
GGGAGAGAAA GAAGTGATAA AAAAATAAAA GTTGTGAAGG GAAAGGGTTT CGAAAGACAA TGCTACCCTT TCATGTGTAA
TACTAATATA GCTAGCTAGT TGGCCAACAC ATGGATGGAA CCACCACTAC ATCCCAATTC TGAAAGCTTT ACACGCTTTT
AACACTCTCT AGAAAAGTGG TGTTCTTTTC TTTCTCTGAG GACTCCTAGC TTTTCCTTTT TCCCATTCTC TTCTTAAATC
CATGGACACA GCTCAGTGGG CACAGGTACA CAGAACTACT TTTTCTGTTT TCTTTCCATA TAATCATGAA AATCTCTGCT
GGGGTTTTGA TTTTCAACCA TAATTTAGAT TATTAAGTTT TGGGTTTGGG AAATTATTTT GATTATATTG TTAGTTCTGA
GGGGGGAAGT TAAGTTTCAC TTTATCCCCA ACTTTTTTCT GATGTTCAGC TCAACCCTCC ACTAAATTCA ATTTTTCTTG
CTGTCTTTTT AAGATCTTTC CCTCATTTAT TTTTATCTGC TATTCAAAGT ACTGCACCTT TCTTTTTCCC ATTTTTTTTT
TCCTTTCCAC CATCTGATAA AGGATAAAGG ACCCAAGATA AAGTTAACAT ATTTGTTTGT ATCATACCAC TGCTGTTGTA
ATCCCTCAAA GTGTTGCAAT AAAAACACCT TCTTTGTATA CCTGTCTTGT TTGTTTCCTT CCTAGACTCT CCTTTTTTTC
TCCTCAAAGG TTTTGAATTC AGTTATGGGC TTTTGCTCTC CTTTTGATTT TATTGTTTTG AAATTTGGAT ATTTTTTCAG
GGTATTGGAG TGGTTAAACC TATGGAAGGT TCAAAGCCTC CTCCTATGTT GGAGAGAAGG GCGAGGCCTC AGAAGGATCA
AGCTTTGAAC TGCCCAAGGT GCAATTCCAC CAACACCAAA TTCTGCTACT ACAATAACTA TAGCCTCTCC CAGCCAAGGT
ACTTTTGCAA GACATGTAGA AGGTATTGGA CTGAGGGTGG TTCTCTCAGA AACGTTCCTG TGGGTGGTGG CTCTAGAAAG
AACAAGAGAT CAACTCCATC AGCTCCATCA CCAGCATCGG CACCAACAAA GAAGCTTCCT GATCTCACAC CACCAAATTT
CCCTCAATCG GCTTCTCAGG ACCCTAAGAT CCACCAAGGC CAAGACCTTA ACTTAGCATA TCCTCCAGCC GAGGACTATA
ACACTGTGTC TAAGTTCATC GAGGTTCCTT ACACCACGGA ATTAGACAAG GGCAGTCTTC AAAACGCCAC TTCCTCATCA
ACACCGTCTC AGTTGTCTGC CATGGAGCTT CTCAAGACTG GGATTGCTTC CTCAAGGGGT TTAAACTCCT TCATGCCAAT
GTATAATTCA ACTGGGTTTC CTTTGCCTGA CTTCAAGCCA CCACCTGGCC TTAACTTCAG TCTGGAGGGC TTTGAAAATG
GTTACGGGGG TCTTCAGGGA ATTCAAGAGG GTCCTACTGG TGCAAGGATC TTGTTTCCTG TGGAGGATTT AAAGCAGCAG
GTTCCAACCA CAAATGAGTT CGATCAGCAG AATAGAAGTC AAGGGGATTC ATCTGGGTAT TGGAATGGCA TGTTAGGTGG
AGGATCGTGG TAGATATTTA GAGAAGAAGA AGAAGAAAAA AAAGAGAACA AGGGTTGCTG TTTTAGCCTT TTATTTTATT
TTTTTTTCTT TTCTTTTCTT T

[show][hide][copy]TRANSCRIPT

>Vigan.02G161300.01
GGGAGAGAAA GAAGTGATAA AAAAATAAAA GTTGTGAAGG GAAAGGGTTT CGAAAGACAA TGCTACCCTT TCATGTGTAA
TACTAATATA GCTAGCTAGT TGGCCAACAC ATGGATGGAA CCACCACTAC ATCCCAATTC TGAAAGCTTT ACACGCTTTT
AACACTCTCT AGAAAAGTGG TGTTCTTTTC TTTCTCTGAG GACTCCTAGC TTTTCCTTTT TCCCATTCTC TTCTTAAATC
CATGGACACA GCTCAGTGGG CACAGGGTAT TGGAGTGGTT AAACCTATGG AAGGTTCAAA GCCTCCTCCT ATGTTGGAGA
GAAGGGCGAG GCCTCAGAAG GATCAAGCTT TGAACTGCCC AAGGTGCAAT TCCACCAACA CCAAATTCTG CTACTACAAT
AACTATAGCC TCTCCCAGCC AAGGTACTTT TGCAAGACAT GTAGAAGGTA TTGGACTGAG GGTGGTTCTC TCAGAAACGT
TCCTGTGGGT GGTGGCTCTA GAAAGAACAA GAGATCAACT CCATCAGCTC CATCACCAGC ATCGGCACCA ACAAAGAAGC
TTCCTGATCT CACACCACCA AATTTCCCTC AATCGGCTTC TCAGGACCCT AAGATCCACC AAGGCCAAGA CCTTAACTTA
GCATATCCTC CAGCCGAGGA CTATAACACT GTGTCTAAGT TCATCGAGGT TCCTTACACC ACGGAATTAG ACAAGGGCAG
TCTTCAAAAC GCCACTTCCT CATCAACACC GTCTCAGTTG TCTGCCATGG AGCTTCTCAA GACTGGGATT GCTTCCTCAA
GGGGTTTAAA CTCCTTCATG CCAATGTATA ATTCAACTGG GTTTCCTTTG CCTGACTTCA AGCCACCACC TGGCCTTAAC
TTCAGTCTGG AGGGCTTTGA AAATGGTTAC GGGGGTCTTC AGGGAATTCA AGAGGGTCCT ACTGGTGCAA GGATCTTGTT
TCCTGTGGAG GATTTAAAGC AGCAGGTTCC AACCACAAAT GAGTTCGATC AGCAGAATAG AAGTCAAGGG GATTCATCTG
GGTATTGGAA TGGCATGTTA GGTGGAGGAT CGTGGTAGAT ATTTAGAGAA GAAGAAGAAG AAAAAAAAGA GAACAAGGGT
TGCTGTTTTA GCCTTTTATT TTATTTTTTT TTCTTTTCTT TTCTTT

[show][hide][copy]CDS

>Vigan.02G161300.01
ATGGACACAG CTCAGTGGGC ACAGGGTATT GGAGTGGTTA AACCTATGGA AGGTTCAAAG CCTCCTCCTA TGTTGGAGAG
AAGGGCGAGG CCTCAGAAGG ATCAAGCTTT GAACTGCCCA AGGTGCAATT CCACCAACAC CAAATTCTGC TACTACAATA
ACTATAGCCT CTCCCAGCCA AGGTACTTTT GCAAGACATG TAGAAGGTAT TGGACTGAGG GTGGTTCTCT CAGAAACGTT
CCTGTGGGTG GTGGCTCTAG AAAGAACAAG AGATCAACTC CATCAGCTCC ATCACCAGCA TCGGCACCAA CAAAGAAGCT
TCCTGATCTC ACACCACCAA ATTTCCCTCA ATCGGCTTCT CAGGACCCTA AGATCCACCA AGGCCAAGAC CTTAACTTAG
CATATCCTCC AGCCGAGGAC TATAACACTG TGTCTAAGTT CATCGAGGTT CCTTACACCA CGGAATTAGA CAAGGGCAGT
CTTCAAAACG CCACTTCCTC ATCAACACCG TCTCAGTTGT CTGCCATGGA GCTTCTCAAG ACTGGGATTG CTTCCTCAAG
GGGTTTAAAC TCCTTCATGC CAATGTATAA TTCAACTGGG TTTCCTTTGC CTGACTTCAA GCCACCACCT GGCCTTAACT
TCAGTCTGGA GGGCTTTGAA AATGGTTACG GGGGTCTTCA GGGAATTCAA GAGGGTCCTA CTGGTGCAAG GATCTTGTTT
CCTGTGGAGG ATTTAAAGCA GCAGGTTCCA ACCACAAATG AGTTCGATCA GCAGAATAGA AGTCAAGGGG ATTCATCTGG
GTATTGGAAT GGCATGTTAG GTGGAGGATC GTGGTAG

[show][hide][copy]PROTEIN

>Vigan.02G161300.01
MDTAQWAQGI GVVKPMEGSK PPPMLERRAR PQKDQALNCP RCNSTNTKFC YYNNYSLSQP RYFCKTCRRY WTEGGSLRNV
PVGGGSRKNK RSTPSAPSPA SAPTKKLPDL TPPNFPQSAS QDPKIHQGQD LNLAYPPAED YNTVSKFIEV PYTTELDKGS
LQNATSSSTP SQLSAMELLK TGIASSRGLN SFMPMYNSTG FPLPDFKPPP GLNFSLEGFE NGYGGLQGIQ EGPTGARILF
PVEDLKQQVP TTNEFDQQNR SQGDSSGYWN GMLGGGSW*