GBrowse Details

Vigan.02G161100.01

Basic Information:
Name: Vigan.02G161100.01
Multiple alignment
Variant Information
Position: Chr02:15426339..15428347 (- strand)
Length: 2009
Functional Information:
Description: Similar to Uncharacterized protein. [I1JYP1, Glycine max]
InterPro: Pentapeptide repeat (IPR001646)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:27.19,38.47,21.30,100.84,10.24,20.10,2.47,20.74
Arabidopsis thaliana homolog: AT5G53490.3
Automatic updates:
Name: NM_001254972 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max thylakoid lumenal 17.4 kDa protein, chloroplastic-like (LOC100785667), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:15426339..15426600 (- strand)
Length: 262
Type: three_prime_UTR
Position: Chr02:15426601..15426824 (- strand)
Length: 224
Type: CDS
Position: Chr02:15427227..15427473 (- strand)
Length: 247
Type: CDS
Position: Chr02:15427899..15428035 (- strand)
Length: 137
Type: CDS
Position: Chr02:15428205..15428307 (- strand)
Length: 103
Type: CDS
Position: Chr02:15428308..15428347 (- strand)
Length: 40
Type: five_prime_UTR

>Vigan.02G161100.01 class=Sequence position=Chr02:15426339..15428347 (- strand)
TTTCAAAACT GAAGTGAAGA GTGAAGAAGA GACAAGAACA ATGGCCAACG TTTCAATTCC ACTCCCTCGA AACGGTTTCT
GCATACCCAG TTACACAACC AAACGCCCAT CTTTCACCCC TCCACTCACA ATTTCTTGCT CTGGTCTTAC TCTTCCTCTC
TTTTTTTTCT TATTTTTTTT ATGATTTACA CAATGCTTAG CTTATCCATT TTCTCAATGT GTTGTCTAAA TTACAGTTTT
ACCTCTTGAT CTCCGCATCA ATCTTAGATA ACTAATTATT TTGTTGGTAA AATGATTACC CCTGTTTTGT AGGAGTAGCT
GACTTAGATG GATCTCATCA GAATAAGGGA GGTTTCTTCA GTTTCAATGG AATGAAGGGC GTGGCCTGTG GTATTCTTGC
AGCTTGTGCT GTTACTTCTG CTGCATTTCC CGTTACTGCT GCTACCCAGG TTCAAACTGT GTTTAAATTT CAACACTTAT
AGAAAATCTT TAATTTAATT CTACACATTG CATATAGGAA TCTTATCTAA TTTTCCCTAC TTATTTTATC AATCCATAAA
AAATGGTCAC ATCATTAATA GATTTCTAGG TTCTACAGGT TGCCTGATTT GGTTGTAGTC ATGTAAACTA CATATGTAAA
CAGAAGCTGT TGCAATTGAT GTGCTTTGAA TTCCTAATTT TAACTTTTAA GCTCCCATTT GGTCTCAGAA GCTCATGTGC
CCAATGAGGA AATTTCATGG ATGAGTTTTC CTTTGCTGAT AGATTAGCTA ACAAAAGTTA AAGGAGGCCC TTGTTTGAAA
GGAGAGTGGT AAAACAGGTT TTATGTGCAA TATATGTACT GAAATTGTTT AGTGCGTGTA TGTTTTCCAT GCAGAGACTT
CCCCCATTGT CGACTGAGCC CAATCGCTGT GAGCGTGCAT TTATTGGCAA CACAATTGGT CAGGCAAATG GTGTATACGA
TAAACCATTA GATCTCCGGC AATGTGATTT CACAAATGAA AAATCCAACC TCAAGGGGAA GTCCCTCTCT GCAGCACTCA
TGTCGGATGC TAAGTTTGAT GGTGCTGATA TGACAGAAGT TATAATGTCT AAGGCTTATG CTGCTGGTGC CAGCTTTAAA
GGTAACATTT TTCACTTGTG CAAAATCAAC CAAACAATGG ATTACTGTGT CACTTCGTCA GCCTTTAGGG ACCGAATACA
AGTTCTTCAG TGTATCTATA TTTATCAAAT GTATCTCCTC CTTTCGTCGT TGTTGTTGAG AGCAGTAATC TACTAAGCTT
GAATGGCAGA ACATATAAAA CTACCTTCAT TTATTTATCT TTCACAAAAC TAGTTTAACT GGGCGATTAA GAGATGTTCT
GATACTTATC ATTGTTCGAA GTGTTCTTTT CTGCCACAAC TAGATGAACA AGATGAGTCT ATGGAGATTC TATAGAATAG
TTCCAAATTA TATGTCAACC TGCAAGTTGT GATTCATTCT ATTTGGCACA TAGACAAAGC AATGATCCAG GGATATTTTA
CAGGGGTGGA CTTCTCAAAT GCAGTGTTGG ACCGTGTGAA CTTCGAGAAA GCTGATCTTG AAGGAGCTGT ATTTAAGAAC
ACAGTATTGT CGGGCTCCAC CTTTGACGAG GCTAAGCTGG ACAAGGCAGT TTTTGAGGAC ACTATTATTG GTTATATTGA
TCTCCAGAAA CTCTGCACAA ACAAGTCCAT CAATGATGAA GGGAGAGCTG AACTAGGATG TCGATGAAAA GAACTAAAGT
ATGCTGCTAT GCCATGACGT ACCACAGCTA TTTTGATGAG GGTAGCCAGT GGATTAATGT TACGTCCGAA AGAAAATTTA
ATTCTTTGCT TTTCTTGCAT GATGTTGCAT AACTTTGTAG TATTCCTCGT GATTTTAACA TATAAATCCA AGTATATTTG
ATCATTTTAC ATGTATTTGA TTGTACAATA TCCAGTTGAT TCTAAACAAC CTTGTTAACT TTTCAGTTTT CGCCATGACT
TAGATAAGG

>Vigan.02G161100.01
TTTCAAAACT GAAGTGAAGA GTGAAGAAGA GACAAGAACA ATGGCCAACG TTTCAATTCC ACTCCCTCGA AACGGTTTCT
GCATACCCAG TTACACAACC AAACGCCCAT CTTTCACCCC TCCACTCACA ATTTCTTGCT CTGGAGTAGC TGACTTAGAT
GGATCTCATC AGAATAAGGG AGGTTTCTTC AGTTTCAATG GAATGAAGGG CGTGGCCTGT GGTATTCTTG CAGCTTGTGC
TGTTACTTCT GCTGCATTTC CCGTTACTGC TGCTACCCAG AGACTTCCCC CATTGTCGAC TGAGCCCAAT CGCTGTGAGC
GTGCATTTAT TGGCAACACA ATTGGTCAGG CAAATGGTGT ATACGATAAA CCATTAGATC TCCGGCAATG TGATTTCACA
AATGAAAAAT CCAACCTCAA GGGGAAGTCC CTCTCTGCAG CACTCATGTC GGATGCTAAG TTTGATGGTG CTGATATGAC
AGAAGTTATA ATGTCTAAGG CTTATGCTGC TGGTGCCAGC TTTAAAGGGG TGGACTTCTC AAATGCAGTG TTGGACCGTG
TGAACTTCGA GAAAGCTGAT CTTGAAGGAG CTGTATTTAA GAACACAGTA TTGTCGGGCT CCACCTTTGA CGAGGCTAAG
CTGGACAAGG CAGTTTTTGA GGACACTATT ATTGGTTATA TTGATCTCCA GAAACTCTGC ACAAACAAGT CCATCAATGA
TGAAGGGAGA GCTGAACTAG GATGTCGATG AAAAGAACTA AAGTATGCTG CTATGCCATG ACGTACCACA GCTATTTTGA
TGAGGGTAGC CAGTGGATTA ATGTTACGTC CGAAAGAAAA TTTAATTCTT TGCTTTTCTT GCATGATGTT GCATAACTTT
GTAGTATTCC TCGTGATTTT AACATATAAA TCCAAGTATA TTTGATCATT TTACATGTAT TTGATTGTAC AATATCCAGT
TGATTCTAAA CAACCTTGTT AACTTTTCAG TTTTCGCCAT GACTTAGATA AGG

>Vigan.02G161100.01
ATGGCCAACG TTTCAATTCC ACTCCCTCGA AACGGTTTCT GCATACCCAG TTACACAACC AAACGCCCAT CTTTCACCCC
TCCACTCACA ATTTCTTGCT CTGGAGTAGC TGACTTAGAT GGATCTCATC AGAATAAGGG AGGTTTCTTC AGTTTCAATG
GAATGAAGGG CGTGGCCTGT GGTATTCTTG CAGCTTGTGC TGTTACTTCT GCTGCATTTC CCGTTACTGC TGCTACCCAG
AGACTTCCCC CATTGTCGAC TGAGCCCAAT CGCTGTGAGC GTGCATTTAT TGGCAACACA ATTGGTCAGG CAAATGGTGT
ATACGATAAA CCATTAGATC TCCGGCAATG TGATTTCACA AATGAAAAAT CCAACCTCAA GGGGAAGTCC CTCTCTGCAG
CACTCATGTC GGATGCTAAG TTTGATGGTG CTGATATGAC AGAAGTTATA ATGTCTAAGG CTTATGCTGC TGGTGCCAGC
TTTAAAGGGG TGGACTTCTC AAATGCAGTG TTGGACCGTG TGAACTTCGA GAAAGCTGAT CTTGAAGGAG CTGTATTTAA
GAACACAGTA TTGTCGGGCT CCACCTTTGA CGAGGCTAAG CTGGACAAGG CAGTTTTTGA GGACACTATT ATTGGTTATA
TTGATCTCCA GAAACTCTGC ACAAACAAGT CCATCAATGA TGAAGGGAGA GCTGAACTAG GATGTCGATG A

>Vigan.02G161100.01
MANVSIPLPR NGFCIPSYTT KRPSFTPPLT ISCSGVADLD GSHQNKGGFF SFNGMKGVAC GILAACAVTS AAFPVTAATQ
RLPPLSTEPN RCERAFIGNT IGQANGVYDK PLDLRQCDFT NEKSNLKGKS LSAALMSDAK FDGADMTEVI MSKAYAAGAS
FKGVDFSNAV LDRVNFEKAD LEGAVFKNTV LSGSTFDEAK LDKAVFEDTI IGYIDLQKLC TNKSINDEGR AELGCR*