GBrowse Details

Vigan.02G150600.01

Basic Information:
Name: Vigan.02G150600.01
Multiple alignment
Variant Information
Position: Chr02:13964789..13970535 (- strand)
Length: 5747
Functional Information:
Description: Similar to Ubiquitin-associated/translation elongation factor EF1B protein. [Q8LG11, Arabidopsis thaliana]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: UBA-like (IPR009060)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.77,5.38,2.17,2.20,2.68,2.00,4.03,1.52
Arabidopsis thaliana homolog: AT5G53330.1
Automatic updates:
Name: NM_001253218 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100808287 (LOC100808287), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:13964789..13967646 (- strand)
Length: 2858
Type: three_prime_UTR
Position: Chr02:13967647..13967781 (- strand)
Length: 135
Type: CDS
Position: Chr02:13969209..13969310 (- strand)
Length: 102
Type: CDS
Position: Chr02:13969520..13969684 (- strand)
Length: 165
Type: CDS
Position: Chr02:13969957..13970015 (- strand)
Length: 59
Type: CDS
Position: Chr02:13970165..13970279 (- strand)
Length: 115
Type: CDS
Position: Chr02:13970280..13970535 (- strand)
Length: 256
Type: five_prime_UTR

>Vigan.02G150600.01 class=Sequence position=Chr02:13964789..13970535 (- strand)
AAATCCTTGG ACTTTATCCC GGTGTTAGCG TGCATGGACA TGTATTATCT AATGACTAAC TGAACAAATT TAGCTATCAA
CAATTTTCCA TTTTAGAACT CAATTCAGCT TTGATTAGTC AATTTCTTTT GCTGATAAAT AGTCAAATTT TCAAATAATT
ATTGAGTAAA CATTTTGTTT GATCAGTCAA AGAAAACAAA ACTTACAAGG TGAAGTTAGA ATCCGGTTCC GAAGTGGGAC
GGCACACGTT TGTTCGATGG ACTACGATTT CAGAAGCAGG TCGGGCCTAC AAGCTCCGAT GTACCGTCCG CAGCCGCCAC
CGCCACCGAT GTACCGTCCG ACACCGTATG AGCAGAATCC CACACCTTCA TGTAACCCTT TCTCTCTCCC TCTGATTAAG
GGTTTAAGTT TTCGTTTGTT TTGTGTTCTT TCTTGAAACT TGCGGAAATG AAAGAAAAAT TGATTCAGAT GCGTTTTCAC
TGCGGTGAAG TTGATTTTTC GCATTGAATT GAATGTGCAG CAGGATTAGG ATTTGGCGTT AGGGTTGCTA TAAGGCCAGA
ATATAGGATC ACACCGCCGG TAAGATTTGC TTTGCTATTA CTTTTGTGAA TTGATAGAAT TTCTAAATTA CTCTGCGTTT
TAATGCTTGT AAGAATGATT TGTAATTTAA ACGGATACGA TTACTTTGTG AAGTCCATTT TGGATGTTGG TGAAAGCAAG
GCGAATTTTT GCGTTAAATT CATTTTGAGG CTGTTCTTCC ATGAGTCTGA AAATTCTAAA GCTTTGCATA ATTGACTTGG
TCTGTTTCGA TGGTTGAATA TGATCTTTTA ATTGTTTTGA CAATTTTGCA GCCTCATTTA TCGCCTCATG CGGGAGATAA
TCCAAGGAGC AACTTCCAAT TTGAATTTGA ATTAGAGAGA AAAATTTTAG CTGAAGCGGA TAAGGATAAC CCAAATTGGA
GCAAATTTGG ATCAGAAAAT ATCCCGACCA AAGTTTCTGA TTCTTCAACA GCAAAGGTTT GTTCTTGATT TAGAGCAAGA
AGTTACAAGT TATGCTATTG TAATGGGTTT AATGAATTCT TTTCCTGTAT TTATTATGCA GAGGTGATAC ATTACTATTT
CTTAATTTGT AATTAATTTG GAGTACTCTT TTTCTGTGTG TGTATACATC ATTTACTGTT TCCAAGTTCC AATTCTCAGT
GTAAAATGAA ACCATTTTTG TTTAGGTTCC TGCTGTGGAT TCCATTATGA GCAAATTTAT AGCTATGGGG CTCAGCCAAG
AAGCTGTTCC AATTGCTGTT GAAAACTATG GTGATGATCC AACCAAAGTA AGTTATGATC ACTGACAGTC ATTGTTAACG
TGATGTTTCA GTTAATAACA TTAGTAAAAA GTGTGATTAT GATTCTGAAA ATAATGTCAT ACAGCTCTCT CTTTTGTAAT
GACCATGTTG ACTACATTTG TTTGTAACCC AAATGGTTCT TCCCTCGATA CTAGACTCTC TCCAGATTAT TTTTTTGAAC
TTATTTCCAG TCATGGAGTT GATTGCTTTA CCAAGAATGA TAAAGTGATC AGTTTAATAG ATAGTTAGCT AAACAATGTG
TAAATCTTTG GATGTCTCGC TTGATTGATT GTCTTCTTAC CACGTCTCTT TGTCTTGGTA AGGAGAGTAG CATTGGTATT
CTATGAGTCT ACTAGTTCCT TTTATTTACA AACCTCAATG GTCATTAAGG AGAGTTGCTT TGATATCCTT ACATGTTATG
CTTTAGGCCT AAATGGAAGA ATTTTGACTT AAGTTTCTAT TCAACTCATA GTTTTCTGAA CTAGACCGAA CTAACTAGTT
TGACCAGTCT AGCAGAGGAA CTGGTCCAGT GTCGGTTCAG TTATACAAAA AAACCCAGCT AATTTCAAAA CTGGTAAAGA
ACTGTGCGGA ACTGGTGTTG GAAATCAATT TGAACCGGTA TTTCAAAATT TTAAACCTTT TTTATATTTT GAATTTAATC
TGAAATATTG AGGTTAATAA AAACACATAT TTGCACATAG TTATGCATTA TTGCCTATTG TTATTAATTT TTTTTATCTT
ATAGAACATA CGATTTAGCT TTTTATATTA ATATGCAATT TTTTATATCA TGAGTTTTAT GATTTTATAC TTTTTCATCA
CTTAAAATAT TAAATAAATC TAAAAATATA AACTTTATTT CTACCAGTTT GATCGAGGTT CAACATAAAT TGTGAACCAA
TTTCTTCTCT GGTTTAACTG TAGATCTTGT TTTTATAACA TCGATTTTTA GTTGACCAGT TGTCTACTTC ATGTTTGCAT
TCTGTTAAAA GCTTTTCCAG TTCATTTTGG AGGCTGCTTC CAAATCGAAT ATAACTATTG GCCTTTCTTA GCATTAGAGA
ATTTCAAGAG CTTCCCCAGC TTGGATCTTA TTTCTTAGTG TTTTGCTTTG TCATTCTTAG GATGATGGCC AGGACTAAGC
CTGCCTTGAA GGGGTATTGT ATATAAATTG CATCACGTGG TTTTTTTATT GTTGGTACTT ACCACATTGG ATGCATGTTT
CTGGTTTTCG AAGTAATCAT TACATTGTAT TTTCTGCTTA GGGTTTAGCA TCTGATGACT TCATGTTTTT CTTATTTAGA
CTATTGCTAA AATCCTTTAT TTGTGTTGCC AGCTGTCACA GTAGTACCCA TAAGATCCGT AAGAGTCTAA CTGATTAATT
CGTTTTTCTG ACTTAATGTA TTTCTCATTT GAAGGTTCAA GAATTTGTGA AAGGCTACAC ACTTCTACGT GAAATGGGAT
TTTCATCAAA TAGTGTTGCG GAAGCTCTGG TTATGAATGA CAACCGTACC GACAGGGCAC TAGCGCATTT CCTTAACGGT
TCATCGTAGA GACTATTAAT GACTGAGGAA TATGTTAGTT TCTTTGGACG ATGATAAATA ATGGTCAGAT ATAGGTTGAA
ACATGGGCCA TCTGTTGGTG TCCTTAGTTT TATATACACA TATGTTGGTG ATTTGTGGAA TTGGTTTTGG TTTGAAAGGA
TTGGTAATTC TTAGAGATAA CAAATAGATC TAATTTCCTC CCCGTATTAT GTCTTGCTTT GTTTGGATGT CAAACGATTA
ATTACGTTAT TCTATTGCGA ATCTTCAGAT TCTAATGATA AATAGTTAAC TTATATGAAA AAACCATAAT CATGAATCAA
AATTCACTGT CCTATCTCAT GTACAAAGTT CCCTTAACTG CGAATGAGAT TATGAGCCAC CATGTCATTC CTATAAATTC
TTTCATCAAG TACATTTTTG GAAGTTCTTT AACTAATAGG ACCCTCTTTC CAATGCCTAC GAAAAGAAGG AACCCAATAA
TGATAGAAAT CAATTTATAG GCAGCAAGCT CTTGTAGAAA AAAAAAAAAA ACAAGGCGGG AAGCTGAAGT TTTATTTGCT
GTAGATGTTG CATGCCTCAG TTATAACTGC AAGTAAACCT TCAACCACTC AACTTGCCAA CTGTGCTCAT AAGATGAAAC
TGTTTCTCGA TGGACATCAA ACAACTTTTC CAAAGACATC TCTACGAATA ACTCCTCTTC CAATAGAAAT TAAAAAAAAA
AATCTTAGGA AGCAAACCTT GTAACATGAC TCCCATGTAT TAACGTTTGT GGTCTTCTCA CAAGAATGAA CTGGAATGAA
TTCAAACACC AGCACAGATT GCTCCTGAAA AACATAATCA TGTATACTTC AAAATTTGAC GACGTCAACC ATTATTATGG
TAAGTAGATT TTCTATATAA ATTTCTTGTA TACTTTAAAC TAGAACATGA AATTTTAAAC TAGCACACAT GCACATGTAA
TACATGGATA GAGAGGGAGA CCTGTCGACC AAGATGAACA ACAAAACTTT GCCTCATCAA CATGCTTCAC GTCAAGTCCA
ATAAACCAGG ATCCAGCGCT CACATCATCG TGGGCATATG TACGAAGAAT AGATCTGTCA AGTCAATAGA TTCAAGATTA
ATGCATAAAT GGCAACTAAC AGCATATGTG CAGATAGGAG TATATCTGAC CTGTTTATTG ATATAAATTT GGCCAAAGCT
CGTGATATAA CATACATCTC TCCTGATGCA TGGCGAAAGT ATCTGTTGAG ATATTTGATC ATTATTTCAA GAGGAGATAG
ATGACACGAA GAAAAATATT TATGATGGTT AGTGCACCTC AAGGCATTCG GTGTTTTGCA CCATAACACT AAATAAATAC
ATGAAATATT CAAATCACAT GATAGGGATA CAGAAATTTT ACATTGACTT GACATTTTGG CATTTAATAA TGTATAATCA
TGTCTGTAGA GTATTTTTTT TATTAGGAAT TGTATGTGCA GAAAACATAA TTTTATTCAT ATAAAAGTCA ACATATTTAT
AGAACATGAG TAAAACAGAA AAACTATCAA CTAATAAACT GCCTAAAAAA TATTGTCCAG AAAAAAGATA ACAAATGTAT
CCTAACAGTC AATATGGCTT TTAAAATAAA TCATAAAAAT CTAAAATACT GTGTTGCTAA TTAGTTCCAA CAGTTACATA
TTCAACAACA TCGCATACTG GACTTCTCCC AAAACTATTG TTCTGAAAAA ATGTATTGCA GTTTTACATA CTGGATCAAC
AAACTCAGTT GCAGAATATC GTGAAAAAAA AAATGTTTCA CCAAAGATAC ACTTTCAGCT ATGAAAAACT GGTAAATACT
GCATAATTCA TGACTAATTT ATACAAGTTT GACAAGCAGT AAAATTAATA CAGTTGTTCA GTCATATGAA ATAACAGGTT
GCTTGGCTTA CGATTTTTTG TCACCAAATT TCCACCATTC TGGTTCATAC CATTTATGGT TCCTGTCATA TTACAAGATA
CCAGCATGAG AATCATAACA TATATTCTCT CTAGAGCACA TAAAATAAAA CATTTTAAGC AACTTAAGGG GCTCACAGCT
CAGAGAAAAC TTCGCCTGAT TTCATGCATC CCAAGTAAAC ACGTGGTTTG TCCAAGTGAG CAGCCAGTGT AGCTCCCAAG
GCATCTGTGC AAGGAAAAAT AAAGTGGTAA GACACATGTA CATATAAAAA TGGGTAACAA GTTCTCTGGA ATTTCATTAA
ATAGGGTGGA GGGACGAGCA CACAATAAAA TGTTAGCATA CAATCATCAA AGGAACAATT AAATTTTTTT CTTCTTTGTT
TTCTTTAACA TATTTCCTCT ATTCTTGCTG GTGCTTGAAA TTGGTAATGG GTTGTAGCCT AATAATACAA TCTTGGATAA
TAGATGTCTA ATAAGATGAA ACTTGAAGAT TACTCCACAA GAACCTCAGT TGCTATCAAG AGAAATGCTT TATTCTTCCT
ATATTTCTCT AATAGGTTGA AGTTTCCATC GGAAGCATGC AACCATTTAC GACGAGAATG TTTGAATTAG CTATTATATA
TTATTTAACA TGAACTTTTA ATATTTTAAA ATTCATCAAG TACGAAGTTC TTGGTATCAC AAGGCCTGAA ATTCTTGACA
TATATAAAAG GAATATACAT TTGTATTTGC AGGTTAAGAA AAATAGAAAG GATAGATCAC TGTTACACTG GACAAGCAAT
AACCTTCTGC CGAAAGATTG ATAATTTTTC GAAAACAGTT TTAAGATGAA CGTATAAAGA TGACAGAAAA GTACACTATA
GTCTAATAGC CGTAGCTATC ATATGATATA GCCATCATAT CAAATTTTCT GAACATCCAG CTGCAAG

>Vigan.02G150600.01
AAATCCTTGG ACTTTATCCC GGTGTTAGCG TGCATGGACA TGTATTATCT AATGACTAAC TGAACAAATT TAGCTATCAA
CAATTTTCCA TTTTAGAACT CAATTCAGCT TTGATTAGTC AATTTCTTTT GCTGATAAAT AGTCAAATTT TCAAATAATT
ATTGAGTAAA CATTTTGTTT GATCAGTCAA AGAAAACAAA ACTTACAAGG TGAAGTTAGA ATCCGGTTCC GAAGTGGGAC
GGCACACGTT TGTTCGATGG ACTACGATTT CAGAAGCAGG TCGGGCCTAC AAGCTCCGAT GTACCGTCCG CAGCCGCCAC
CGCCACCGAT GTACCGTCCG ACACCGTATG AGCAGAATCC CACACCTTCA TCAGGATTAG GATTTGGCGT TAGGGTTGCT
ATAAGGCCAG AATATAGGAT CACACCGCCG CCTCATTTAT CGCCTCATGC GGGAGATAAT CCAAGGAGCA ACTTCCAATT
TGAATTTGAA TTAGAGAGAA AAATTTTAGC TGAAGCGGAT AAGGATAACC CAAATTGGAG CAAATTTGGA TCAGAAAATA
TCCCGACCAA AGTTTCTGAT TCTTCAACAG CAAAGGTTCC TGCTGTGGAT TCCATTATGA GCAAATTTAT AGCTATGGGG
CTCAGCCAAG AAGCTGTTCC AATTGCTGTT GAAAACTATG GTGATGATCC AACCAAAGTT CAAGAATTTG TGAAAGGCTA
CACACTTCTA CGTGAAATGG GATTTTCATC AAATAGTGTT GCGGAAGCTC TGGTTATGAA TGACAACCGT ACCGACAGGG
CACTAGCGCA TTTCCTTAAC GGTTCATCGT AGAGACTATT AATGACTGAG GAATATGTTA GTTTCTTTGG ACGATGATAA
ATAATGGTCA GATATAGGTT GAAACATGGG CCATCTGTTG GTGTCCTTAG TTTTATATAC ACATATGTTG GTGATTTGTG
GAATTGGTTT TGGTTTGAAA GGATTGGTAA TTCTTAGAGA TAACAAATAG ATCTAATTTC CTCCCCGTAT TATGTCTTGC
TTTGTTTGGA TGTCAAACGA TTAATTACGT TATTCTATTG CGAATCTTCA GATTCTAATG ATAAATAGTT AACTTATATG
AAAAAACCAT AATCATGAAT CAAAATTCAC TGTCCTATCT CATGTACAAA GTTCCCTTAA CTGCGAATGA GATTATGAGC
CACCATGTCA TTCCTATAAA TTCTTTCATC AAGTACATTT TTGGAAGTTC TTTAACTAAT AGGACCCTCT TTCCAATGCC
TACGAAAAGA AGGAACCCAA TAATGATAGA AATCAATTTA TAGGCAGCAA GCTCTTGTAG AAAAAAAAAA AAAACAAGGC
GGGAAGCTGA AGTTTTATTT GCTGTAGATG TTGCATGCCT CAGTTATAAC TGCAAGTAAA CCTTCAACCA CTCAACTTGC
CAACTGTGCT CATAAGATGA AACTGTTTCT CGATGGACAT CAAACAACTT TTCCAAAGAC ATCTCTACGA ATAACTCCTC
TTCCAATAGA AATTAAAAAA AAAAATCTTA GGAAGCAAAC CTTGTAACAT GACTCCCATG TATTAACGTT TGTGGTCTTC
TCACAAGAAT GAACTGGAAT GAATTCAAAC ACCAGCACAG ATTGCTCCTG AAAAACATAA TCATGTATAC TTCAAAATTT
GACGACGTCA ACCATTATTA TGGTAAGTAG ATTTTCTATA TAAATTTCTT GTATACTTTA AACTAGAACA TGAAATTTTA
AACTAGCACA CATGCACATG TAATACATGG ATAGAGAGGG AGACCTGTCG ACCAAGATGA ACAACAAAAC TTTGCCTCAT
CAACATGCTT CACGTCAAGT CCAATAAACC AGGATCCAGC GCTCACATCA TCGTGGGCAT ATGTACGAAG AATAGATCTG
TCAAGTCAAT AGATTCAAGA TTAATGCATA AATGGCAACT AACAGCATAT GTGCAGATAG GAGTATATCT GACCTGTTTA
TTGATATAAA TTTGGCCAAA GCTCGTGATA TAACATACAT CTCTCCTGAT GCATGGCGAA AGTATCTGTT GAGATATTTG
ATCATTATTT CAAGAGGAGA TAGATGACAC GAAGAAAAAT ATTTATGATG GTTAGTGCAC CTCAAGGCAT TCGGTGTTTT
GCACCATAAC ACTAAATAAA TACATGAAAT ATTCAAATCA CATGATAGGG ATACAGAAAT TTTACATTGA CTTGACATTT
TGGCATTTAA TAATGTATAA TCATGTCTGT AGAGTATTTT TTTTATTAGG AATTGTATGT GCAGAAAACA TAATTTTATT
CATATAAAAG TCAACATATT TATAGAACAT GAGTAAAACA GAAAAACTAT CAACTAATAA ACTGCCTAAA AAATATTGTC
CAGAAAAAAG ATAACAAATG TATCCTAACA GTCAATATGG CTTTTAAAAT AAATCATAAA AATCTAAAAT ACTGTGTTGC
TAATTAGTTC CAACAGTTAC ATATTCAACA ACATCGCATA CTGGACTTCT CCCAAAACTA TTGTTCTGAA AAAATGTATT
GCAGTTTTAC ATACTGGATC AACAAACTCA GTTGCAGAAT ATCGTGAAAA AAAAAATGTT TCACCAAAGA TACACTTTCA
GCTATGAAAA ACTGGTAAAT ACTGCATAAT TCATGACTAA TTTATACAAG TTTGACAAGC AGTAAAATTA ATACAGTTGT
TCAGTCATAT GAAATAACAG GTTGCTTGGC TTACGATTTT TTGTCACCAA ATTTCCACCA TTCTGGTTCA TACCATTTAT
GGTTCCTGTC ATATTACAAG ATACCAGCAT GAGAATCATA ACATATATTC TCTCTAGAGC ACATAAAATA AAACATTTTA
AGCAACTTAA GGGGCTCACA GCTCAGAGAA AACTTCGCCT GATTTCATGC ATCCCAAGTA AACACGTGGT TTGTCCAAGT
GAGCAGCCAG TGTAGCTCCC AAGGCATCTG TGCAAGGAAA AATAAAGTGG TAAGACACAT GTACATATAA AAATGGGTAA
CAAGTTCTCT GGAATTTCAT TAAATAGGGT GGAGGGACGA GCACACAATA AAATGTTAGC ATACAATCAT CAAAGGAACA
ATTAAATTTT TTTCTTCTTT GTTTTCTTTA ACATATTTCC TCTATTCTTG CTGGTGCTTG AAATTGGTAA TGGGTTGTAG
CCTAATAATA CAATCTTGGA TAATAGATGT CTAATAAGAT GAAACTTGAA GATTACTCCA CAAGAACCTC AGTTGCTATC
AAGAGAAATG CTTTATTCTT CCTATATTTC TCTAATAGGT TGAAGTTTCC ATCGGAAGCA TGCAACCATT TACGACGAGA
ATGTTTGAAT TAGCTATTAT ATATTATTTA ACATGAACTT TTAATATTTT AAAATTCATC AAGTACGAAG TTCTTGGTAT
CACAAGGCCT GAAATTCTTG ACATATATAA AAGGAATATA CATTTGTATT TGCAGGTTAA GAAAAATAGA AAGGATAGAT
CACTGTTACA CTGGACAAGC AATAACCTTC TGCCGAAAGA TTGATAATTT TTCGAAAACA GTTTTAAGAT GAACGTATAA
AGATGACAGA AAAGTACACT ATAGTCTAAT AGCCGTAGCT ATCATATGAT ATAGCCATCA TATCAAATTT TCTGAACATC
CAGCTGCAAG 

>Vigan.02G150600.01
ATGGACTACG ATTTCAGAAG CAGGTCGGGC CTACAAGCTC CGATGTACCG TCCGCAGCCG CCACCGCCAC CGATGTACCG
TCCGACACCG TATGAGCAGA ATCCCACACC TTCATCAGGA TTAGGATTTG GCGTTAGGGT TGCTATAAGG CCAGAATATA
GGATCACACC GCCGCCTCAT TTATCGCCTC ATGCGGGAGA TAATCCAAGG AGCAACTTCC AATTTGAATT TGAATTAGAG
AGAAAAATTT TAGCTGAAGC GGATAAGGAT AACCCAAATT GGAGCAAATT TGGATCAGAA AATATCCCGA CCAAAGTTTC
TGATTCTTCA ACAGCAAAGG TTCCTGCTGT GGATTCCATT ATGAGCAAAT TTATAGCTAT GGGGCTCAGC CAAGAAGCTG
TTCCAATTGC TGTTGAAAAC TATGGTGATG ATCCAACCAA AGTTCAAGAA TTTGTGAAAG GCTACACACT TCTACGTGAA
ATGGGATTTT CATCAAATAG TGTTGCGGAA GCTCTGGTTA TGAATGACAA CCGTACCGAC AGGGCACTAG CGCATTTCCT
TAACGGTTCA TCGTAG

>Vigan.02G150600.01
MDYDFRSRSG LQAPMYRPQP PPPPMYRPTP YEQNPTPSSG LGFGVRVAIR PEYRITPPPH LSPHAGDNPR SNFQFEFELE
RKILAEADKD NPNWSKFGSE NIPTKVSDSS TAKVPAVDSI MSKFIAMGLS QEAVPIAVEN YGDDPTKVQE FVKGYTLLRE
MGFSSNSVAE ALVMNDNRTD RALAHFLNGS S*