GBrowse Details

Vigan.02G141800.01

Basic Information:
Name: Vigan.02G141800.01
Multiple alignment
Variant Information
Position: Chr02:12891691..12892989 (+ strand)
Length: 1299
Functional Information:
Description: Similar to Uncharacterized protein. [I1JZ11, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor (GO:0016655)
InterPro: NAD(P)H-quinone oxidoreductase subunit M (IPR018922)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.08,14.88,233.90,0.18,11.80,0.97,17.70
Arabidopsis thaliana homolog: AT4G37925.1
Automatic updates:
Name: NM_001249328 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527195 (LOC100527195), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:12891691..12891812 (+ strand)
Length: 122
Type: five_prime_UTR
Position: Chr02:12891813..12892265 (+ strand)
Length: 453
Type: CDS
Position: Chr02:12892452..12892637 (+ strand)
Length: 186
Type: CDS
Position: Chr02:12892638..12892989 (+ strand)
Length: 352
Type: three_prime_UTR

>Vigan.02G141800.01 class=Sequence position=Chr02:12891691..12892989 (+ strand)
GACCACAAAA AGTTCCCTCC TTGAGTTATG TAGGAGAAAT CTTATCCATA GCAGTGGGAA ACTAATATAA AGGCAATCAC
CACGAAATTA AACCTTAGCA ACGCACAACA CATCCTTAAA TCATGGCCAC GAGTTGCTCC TACATGGTTT CCACCAAATT
GTCCATGTTG GGTTGGAGTG GAGGAAGAAG AGAAGTCAGA AACCGGAGAA CAGTTTTAGT ATCAGCCCAA CAACAGAGCG
ATGTTCAGGA AGCAGAGGAC GTGAAGGAGA AAGAGCAGGA ACAAGTGCAA AGTGAGAAAC CGAAGCCAAA AGGAACGATA
CCAAGGCCAG TGGAACCTCA GGTGAATGTG AAGAGCAAAA ACATGATAAG GGAATATGGA GGGCAGTGGT TGAGCTGCAC
CACACGCCAT GTCAGGATCT TCGCAGCCTA TATCGACCCT GTAACTTTCG AGTTTGATCA AACCCAGATG GATAAGCTCA
CCCTTATTCT TGATCCTACT GATGAGTTTC TGTGGAACCC TGAAACCTGC AACATGGTCT ATTCTTACTT CCAGGAACTT
GTTGATCACT ACGAGGTACT TTCCTTAAAC ACAATTCATT TATCTTCGAT CTGTTTGTCT TAGGTTGGTG TCACAGTTTG
GTGTCACAGT TTCTGAGAGT CTAATTAACA AAATATGGAA GGAAAGAGGA TGTGAGATTT TAGATATGTG CTTTAGGTTG
TTGTGTGTGT TGAAATACTA AGGTGTGATT ATCCAAAACA GGGTGCTCCA TTGAACGATT ACACCCTTCG TCTGATTGGT
TCGGACATAG AGCACTACAT AAGAAAGATG TTATACGATG GCCTAATCAA GTACAACATG AATGCAAGGG TTCTGAATTT
CAGCATGGGC AAGCCACGGA TCATGTTCGA CAATGATATC AAACCTGAAG TTTCAATGGA GAAGTGATTT GTGAATACAG
CAAGAAAAGT GAGTAACCAT GGATGGTTTG CACGTGATTG TTTTGTAGAT TATAAAAAAG AAACTCTAAT CCAACATTAG
ATTGTTTTTG GATTCGAGTG AAACTAGTGC AGACCAAAAT ATAGTTACAG ATACAGAGTA TTCTTACTGT CTGTAATATA
GCTTCTGTTC ATCGCTTATG TTACTAAACT GGTATAATCA CCCACCCCTC CTACACATCC ATCTTATCTT AAAATTTAGT
TCTTTCTACA GACCAATAAG TTTCATCACA GAGGACGGAT AATTAAATGT CATAAGTATA TTAACAGGGT TTGATTGTAT
TGTTTATGCA TATGAAACA

>Vigan.02G141800.01
GACCACAAAA AGTTCCCTCC TTGAGTTATG TAGGAGAAAT CTTATCCATA GCAGTGGGAA ACTAATATAA AGGCAATCAC
CACGAAATTA AACCTTAGCA ACGCACAACA CATCCTTAAA TCATGGCCAC GAGTTGCTCC TACATGGTTT CCACCAAATT
GTCCATGTTG GGTTGGAGTG GAGGAAGAAG AGAAGTCAGA AACCGGAGAA CAGTTTTAGT ATCAGCCCAA CAACAGAGCG
ATGTTCAGGA AGCAGAGGAC GTGAAGGAGA AAGAGCAGGA ACAAGTGCAA AGTGAGAAAC CGAAGCCAAA AGGAACGATA
CCAAGGCCAG TGGAACCTCA GGTGAATGTG AAGAGCAAAA ACATGATAAG GGAATATGGA GGGCAGTGGT TGAGCTGCAC
CACACGCCAT GTCAGGATCT TCGCAGCCTA TATCGACCCT GTAACTTTCG AGTTTGATCA AACCCAGATG GATAAGCTCA
CCCTTATTCT TGATCCTACT GATGAGTTTC TGTGGAACCC TGAAACCTGC AACATGGTCT ATTCTTACTT CCAGGAACTT
GTTGATCACT ACGAGGGTGC TCCATTGAAC GATTACACCC TTCGTCTGAT TGGTTCGGAC ATAGAGCACT ACATAAGAAA
GATGTTATAC GATGGCCTAA TCAAGTACAA CATGAATGCA AGGGTTCTGA ATTTCAGCAT GGGCAAGCCA CGGATCATGT
TCGACAATGA TATCAAACCT GAAGTTTCAA TGGAGAAGTG ATTTGTGAAT ACAGCAAGAA AAGTGAGTAA CCATGGATGG
TTTGCACGTG ATTGTTTTGT AGATTATAAA AAAGAAACTC TAATCCAACA TTAGATTGTT TTTGGATTCG AGTGAAACTA
GTGCAGACCA AAATATAGTT ACAGATACAG AGTATTCTTA CTGTCTGTAA TATAGCTTCT GTTCATCGCT TATGTTACTA
AACTGGTATA ATCACCCACC CCTCCTACAC ATCCATCTTA TCTTAAAATT TAGTTCTTTC TACAGACCAA TAAGTTTCAT
CACAGAGGAC GGATAATTAA ATGTCATAAG TATATTAACA GGGTTTGATT GTATTGTTTA TGCATATGAA ACA

>Vigan.02G141800.01
ATGGCCACGA GTTGCTCCTA CATGGTTTCC ACCAAATTGT CCATGTTGGG TTGGAGTGGA GGAAGAAGAG AAGTCAGAAA
CCGGAGAACA GTTTTAGTAT CAGCCCAACA ACAGAGCGAT GTTCAGGAAG CAGAGGACGT GAAGGAGAAA GAGCAGGAAC
AAGTGCAAAG TGAGAAACCG AAGCCAAAAG GAACGATACC AAGGCCAGTG GAACCTCAGG TGAATGTGAA GAGCAAAAAC
ATGATAAGGG AATATGGAGG GCAGTGGTTG AGCTGCACCA CACGCCATGT CAGGATCTTC GCAGCCTATA TCGACCCTGT
AACTTTCGAG TTTGATCAAA CCCAGATGGA TAAGCTCACC CTTATTCTTG ATCCTACTGA TGAGTTTCTG TGGAACCCTG
AAACCTGCAA CATGGTCTAT TCTTACTTCC AGGAACTTGT TGATCACTAC GAGGGTGCTC CATTGAACGA TTACACCCTT
CGTCTGATTG GTTCGGACAT AGAGCACTAC ATAAGAAAGA TGTTATACGA TGGCCTAATC AAGTACAACA TGAATGCAAG
GGTTCTGAAT TTCAGCATGG GCAAGCCACG GATCATGTTC GACAATGATA TCAAACCTGA AGTTTCAATG GAGAAGTGA

>Vigan.02G141800.01
MATSCSYMVS TKLSMLGWSG GRREVRNRRT VLVSAQQQSD VQEAEDVKEK EQEQVQSEKP KPKGTIPRPV EPQVNVKSKN
MIREYGGQWL SCTTRHVRIF AAYIDPVTFE FDQTQMDKLT LILDPTDEFL WNPETCNMVY SYFQELVDHY EGAPLNDYTL
RLIGSDIEHY IRKMLYDGLI KYNMNARVLN FSMGKPRIMF DNDIKPEVSM EK*