GBrowse Details

Vigan.02G141200.01

Basic Information:
Name: Vigan.02G141200.01
Multiple alignment
Variant Information
Position: Chr02:12802547..12805631 (+ strand)
Length: 3085
Functional Information:
Description: Similar to MADS box protein PIb. [Q533S4, Lotus japonicus]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Transcription factor, MADS-box (IPR002100)
Transcription factor, K-box (IPR002487)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.06,0.00,33.52,0.00,0.00,0.00,0.08,0.34
Automatic updates:
Name: NM_001249313 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306010 (LOC100306010), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:12802547..12802726 (+ strand)
Length: 180
Type: five_prime_UTR
Position: Chr02:12802727..12802914 (+ strand)
Length: 188
Type: CDS
Position: Chr02:12803073..12803139 (+ strand)
Length: 67
Type: CDS
Position: Chr02:12803698..12803759 (+ strand)
Length: 62
Type: CDS
Position: Chr02:12803864..12803963 (+ strand)
Length: 100
Type: CDS
Position: Chr02:12804062..12804091 (+ strand)
Length: 30
Type: CDS
Position: Chr02:12804317..12804361 (+ strand)
Length: 45
Type: CDS
Position: Chr02:12805376..12805429 (+ strand)
Length: 54
Type: CDS
Position: Chr02:12805430..12805631 (+ strand)
Length: 202
Type: three_prime_UTR

>Vigan.02G141200.01 class=Sequence position=Chr02:12802547..12805631 (+ strand)
CTCAGAAAGT TGTTCATCCA CAAACCCATA ATGGAATGTT CCGGTATTAC TTTTCTTGGT GCTTGTTATA TACCCTCTTT
ATCTCCCCAC TTCTTCATTC ACTGAAGTTA TAAGAAACAA AAGGAATACA TAGAAAATAA AGGAGAAGGT AAGAAGAGAA
AGGTTGTGAG TTTGTGAGAG ATGGGGAGGG GTAAGATTGA GATCAAAAGG ATTGAGAACT CAAGCAACAG GCAAGTTACA
TATTCAAAGA GGAAGAATGG GATCCTTAAG AAGGCAAAGG AAATTAGTGT TCTATGCGAT GCTCAAGTTT CCCTTATCAT
CTTTGGTGCC TCTGGAAAGA TGCACGAATA CATCAGCCCC TCCACCACGT AATTATATAA GGACTTCTTT CACTTCTTCA
TCTTCCTTTA GGCTAAACTT CTGCTTTTCT AGATTCCTGG TTTTCATTTT GTTTCATCAA GAACAGTGCA AAACTCTCAA
ATCTATTTTT CTTTCTGGTT TAACTTGGAT CTTTTCATTG GTTAAGGCTG ATTGACATCC TAGACAGATA CCAAAGAGCC
TCTGGGAAGA CCCTCTGGGA CGCCAAGCAT GAGGTAGCTA GGTTTTTTTT TCTTTGAAAA AAAAAACATG AAGAACAAAC
TAGTACTTTT TGTTTGATTT GCCTCAAAGG AAAACATGCA TATATATGTA GTTGTTTTTC TTAGAATATG TTCAGTTCCA
AGAACCGGTG ATTCTGTGGT TAGATCTAGA TTTGGAACAT GTAGGCAAGA GTAGTGAGAA TAGGTATGTG TCTATATGAA
CAGATCTGAC TATAAAACAA TATTATGAAC TCCCCTAATT CCTTTTCTTT GCAAAAGTTT CAAAAGCTGA ATGGTATACA
AGAGTTGTTT GTAGGGGTTA GGAACAAAGA TGTGACAAAT GTCTCTTCCT AGCTAGGGAG TACTCGGTCG ATGGATCTCT
CTCTTGACTA CACGTTTCTT CACTGACATT CAAACCAGCC ACTAGCTAGA CCCAGATCTA CTGCAAATAA TGTTCATTTA
TTTGATAAAT TTTCCTTTCA GTTCCATTTT TGTCTTTCTT TCTGGGGTGA GACTAGGGAC ATAATATATG TATTCGGATT
TTACATAATA TTGTTGTTGA ACTCACTGCA GAACCTCAGC AATGAAATTG ATAGACTCAA AAAAGAGAAT GACAGCATGC
AAATTGAGCT CAGGTATAAA TGTAAACATT AACTATTGCA CCTTGATTAT ATATCCAACG TCATCTCTTA ATTATTTCAG
ATCAAGTGTA TCTATATATA TATATATTTA TATTCAGGCA CTTGAAAGGG GAAGACATTA CGTCACTGAA TTACAAGGAA
CTGATGGCTC TAGAGGATGC CCTTGAAAAT GGCCTCAATG GTGTCCGTGA GAAAAAGGCA ATGATATTTT AATGATTACA
CTTATCACAG ATTCATTATT GGTTATCAAA CACAGAAAAC AAGTTTCCTC AAACCTTGTC TTCTTTGTGC CACAGGTGGA
AGTGCACAGG ATGTTCAAGA GAAATGTATG TAGGTTTTTC TCACATTGTA TACGATGAAA ACTTAATTAG TCTTTACATC
ATAAGTTGAA ATCATAATTA ATTATTCTCA CTTGATTCTA TTAACATATC TGTTATCATA ATCATAATAA TGCTATTTTT
TAGAATAAAA GTACTTTATA TATATATATA TATATATATA TGATACAAGG ATACTCCTGA CTGTTGTTTA ATACATTTGA
TATTGGTCAG GGCAAGATTT TGGAGGAGCA AAATAAGGAA CTCAATTTCC TTCTGGTAAG TGATATATAT ATGTTGTTTT
TCTGAAGCAT TATGAATAAT AATTTGCATG ATTTGAATTC AAAGTTATTT GTCGTTGTGA AAAAAAAAAT CTCATATACA
TAGAAGGGAT GAGAGAGGAA ACTAAATAAA AGGTAAAGAA TAAGATGAGA GATATTTTTA CAGGAAATAC GATATTTATA
GAAAAAAAAA AGAGAATGAG TGTAAGGAGA GAGATAAAAA AATATTTAAA TTGTATTTGA CTTATATTCT TTTAAAAATT
ACTTTTGCCA ATAAATCTTT TAAATTTGAA TCAATTTACT TTTGCTAAAG TAGTGTTTTT CATTTGTGGG ATCGCCGCAT
TTTTAGCTAG TTTAAGGTGT AAAATTTAAC CTACTATATA TATATTCACG AATACTATTG TATCCAAATC CAGATGATGG
TTACTGAAAA GGATCTTAAA CATTGTGAAC TTTTTGTGAA CACAGATCAA CAGGAAAAAA ATTGATACAT ATTAGCTTCT
TTTTTTATTT TATTTTATTT TAATTTGTTA GGTGTGCATT TTGCTGTCAT TTGTAGTTAA AGGACAAATT GAATTTTATA
GTTTTCATAT AAAAAAATAT AATAACACAA ACTTATGTCT TATAAACTTA GAAGCAATCA AATCAGTTGA AATTTAAAAT
ACAGATTTTT TTAAAAAAAT AGCTAAGATA TCATAAAATT AAAATGAATA AAAAGTGTAT ATATTACCTT AAAAAATCGC
TTTAATATAA GCTTGTTTAT GATATGTGGT ACTTGTTGAT TGCATATGTT ACTCATGAAT ACATCTGAGA CTTCATCACC
AGATCAGAAT CAAGACTTAT TGATATTTTA TTTCAATCTT TTATCACATT TTCTATACTG TTTCTCTCAT ATCTTAATAG
ATATTAGCTA ATATAATCTC TCATGAAGAA AATTTATAGC ATAATCCTGG CAGAAAATTT CATGAATGAA ACTAACATTT
ATTTTAATTG TTCTGTATGT GTATTACAGC AGCAACATTT GGCATTAGAA AGCGTGGGAA ACATGCATGG ACAGTGGATT
TGACAGACAA TATATCATAA TTATAAAGGG ATTTCCTATA TATATATAAT GTAGATTAAT GGCTGCTGTT GTCAAATTAA
TTCTGCTCAA AGCCTTGTAT AACTTATATA ATTTCCTATT TCCACCTATT ATTATAATAG TTCATTGTAG ACTCTGAAAC
TTGTTATACC ATGATGATTG AATATTATAT ATGAAACTAT TAATT

>Vigan.02G141200.01
CTCAGAAAGT TGTTCATCCA CAAACCCATA ATGGAATGTT CCGGTATTAC TTTTCTTGGT GCTTGTTATA TACCCTCTTT
ATCTCCCCAC TTCTTCATTC ACTGAAGTTA TAAGAAACAA AAGGAATACA TAGAAAATAA AGGAGAAGGT AAGAAGAGAA
AGGTTGTGAG TTTGTGAGAG ATGGGGAGGG GTAAGATTGA GATCAAAAGG ATTGAGAACT CAAGCAACAG GCAAGTTACA
TATTCAAAGA GGAAGAATGG GATCCTTAAG AAGGCAAAGG AAATTAGTGT TCTATGCGAT GCTCAAGTTT CCCTTATCAT
CTTTGGTGCC TCTGGAAAGA TGCACGAATA CATCAGCCCC TCCACCACGC TGATTGACAT CCTAGACAGA TACCAAAGAG
CCTCTGGGAA GACCCTCTGG GACGCCAAGC ATGAGAACCT CAGCAATGAA ATTGATAGAC TCAAAAAAGA GAATGACAGC
ATGCAAATTG AGCTCAGGCA CTTGAAAGGG GAAGACATTA CGTCACTGAA TTACAAGGAA CTGATGGCTC TAGAGGATGC
CCTTGAAAAT GGCCTCAATG GTGTCCGTGA GAAAAAGGTG GAAGTGCACA GGATGTTCAA GAGAAATGGC AAGATTTTGG
AGGAGCAAAA TAAGGAACTC AATTTCCTTC TGCAGCAACA TTTGGCATTA GAAAGCGTGG GAAACATGCA TGGACAGTGG
ATTTGACAGA CAATATATCA TAATTATAAA GGGATTTCCT ATATATATAT AATGTAGATT AATGGCTGCT GTTGTCAAAT
TAATTCTGCT CAAAGCCTTG TATAACTTAT ATAATTTCCT ATTTCCACCT ATTATTATAA TAGTTCATTG TAGACTCTGA
AACTTGTTAT ACCATGATGA TTGAATATTA TATATGAAAC TATTAATT

>Vigan.02G141200.01
ATGGGGAGGG GTAAGATTGA GATCAAAAGG ATTGAGAACT CAAGCAACAG GCAAGTTACA TATTCAAAGA GGAAGAATGG
GATCCTTAAG AAGGCAAAGG AAATTAGTGT TCTATGCGAT GCTCAAGTTT CCCTTATCAT CTTTGGTGCC TCTGGAAAGA
TGCACGAATA CATCAGCCCC TCCACCACGC TGATTGACAT CCTAGACAGA TACCAAAGAG CCTCTGGGAA GACCCTCTGG
GACGCCAAGC ATGAGAACCT CAGCAATGAA ATTGATAGAC TCAAAAAAGA GAATGACAGC ATGCAAATTG AGCTCAGGCA
CTTGAAAGGG GAAGACATTA CGTCACTGAA TTACAAGGAA CTGATGGCTC TAGAGGATGC CCTTGAAAAT GGCCTCAATG
GTGTCCGTGA GAAAAAGGTG GAAGTGCACA GGATGTTCAA GAGAAATGGC AAGATTTTGG AGGAGCAAAA TAAGGAACTC
AATTTCCTTC TGCAGCAACA TTTGGCATTA GAAAGCGTGG GAAACATGCA TGGACAGTGG ATTTGA

>Vigan.02G141200.01
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEISVLCD AQVSLIIFGA SGKMHEYISP STTLIDILDR YQRASGKTLW
DAKHENLSNE IDRLKKENDS MQIELRHLKG EDITSLNYKE LMALEDALEN GLNGVREKKV EVHRMFKRNG KILEEQNKEL
NFLLQQHLAL ESVGNMHGQW I*