GBrowse Details

Vigan.02G140700.01

Basic Information:
Name: Vigan.02G140700.01
Multiple alignment
Variant Information
Position: Chr02:12755659..12757718 (+ strand)
Length: 2060
Functional Information:
Description: Similar to uncharacterized protein. [C6TH79, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
InterPro: Oxoglutarate/iron-dependent dioxygenase (IPR005123)
Non-haem dioxygenase N-terminal domain (IPR026992)
Isopenicillin N synthase-like (IPR027443)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.65,0.28,9.90,7.74,1.99,2.09,12.23,34.23
Arabidopsis thaliana homolog: AT1G77330.1
Automatic updates:
Name: NM_001253215 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 1-aminocyclopropane-1-carboxylate oxidase 5-like protein (LOC100790622), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001289374 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 1-aminocyclopropane-1-carboxylate oxidase 5-like (LOC100796909), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:12755659..12755995 (+ strand)
Length: 337
Type: five_prime_UTR
Position: Chr02:12755996..12756097 (+ strand)
Length: 102
Type: CDS
Position: Chr02:12756186..12756412 (+ strand)
Length: 227
Type: CDS
Position: Chr02:12756809..12757406 (+ strand)
Length: 598
Type: CDS
Position: Chr02:12757407..12757718 (+ strand)
Length: 312
Type: three_prime_UTR

>Vigan.02G140700.01 class=Sequence position=Chr02:12755659..12757718 (+ strand)
AATATGATGC ATCACCTGAA AGTGAAGGCC TTTTGTTGTA GACTTGTATG CTAAAAACAA GCAGTAACTC CCAAAGCAAG
CATTGACATA AGAATTTTTT TAATTAAATG TATCACCGTC TGTGACCTAA TTCTAACGGC TGCTTACTTT TAAAGGGAAC
ATATACTATT GGTTGATATC CAACTATGTA TCCAATAAGG TGGGAAGTTT TGCTATAAAT AGCCATAGGT ACTTCCCACC
CAAACCACAG CACAAAACAA CACTTGTTAT TATCTCTTTC CCTCTCTCAG ACTTCCACTC TATAACTTTT ATCACTTTTT
TGCACCTTTC TCATCTAATG GCAATTCCAG TGATTGATTT TTCAAAGCTG AATGGAGAAG AAAGAGCAAA AACTATGGCT
CAGATTGCTA ATGGCTGTGA AGAGTGGGGA TTTTTTCAGG TACTTACACT GTTTATGTTT CAAGGAATGG CTCATATGAT
GTTTAAAACA TGTTTATGCA TATCAAAACT CATGCTTTGT GTTACAGTTG ATCAACCATG GCATTCCAGA GGAACTCCTT
GAGAGGGTGA AGAAGGTTGC CTCTGAGTTT TATAAGCTGG AAAGAGAGGA GAATTTCAAG AAGTCGACAT CTGTGAAGCT
ACTGAGTGAT TTAGCTGAAA AGAAGGACAG TGAAAAGCAG GAGTATGTGG ATTGGGAGGA CGTTATCACT CTCCTTGATG
ATAACGAGTG GCCAGAAAAA ACACCAGGCT TCAGGTATAT GAATAAAGCA ATTCAACAGT TCTTCATACT TCAAGAAAGT
CAAACAAAAA CTAAAAAAAA GAATAAAAGT CGAACATCAC ATAAAAAATT ATATTTCATA TGAGGAAGGA CACCACCTAT
AATTTCATGC ACACTCCCTT GTCATATATA CTTTCTCTTA TGTTCTTTTG TACAACTTCA AGCAAATAGG CGTAAATCAG
AATTCAATCC ATCTTACTCT TGATGACTAA AATTGGTCAT TTCACCAAAC ATATAGATGA CATGAAAGCA AACCTGAATT
TGGAAACCAT AGACAACGAC CATAGAACAC TAATTGAGTG GTGTCATGTC ACAACACAAT AGGTAGAGCT TCATCATGAT
TGAATAACTG AATTTTCACA TGGATGACAG GGAAACCATG GCGGAATATC GGTGTGAGTT GAAGAAATTG GCGGAGAGGA
TGATGGAGGT GATGGATGAG AATCTGGAGT TACCCAAAGG ATACATCAAG AAGGCACTGA ATGGTGGAGA TGGAGAGGGT
GCATTCTTTG GCACCAAGGT GAGCCACTAC CCTCCATGTC CCCATCCAGA GCTTGTGAAA GGTCTGCGAG CTCACACTGA
TGCAGGAGGT GTCATCCTTC TCTTCCAAGA TGACAAGGTT GGTGGCCTTC AGATGCTCAA AGATGGGAAA TGGATTGATG
TGCAACCTCT GCCAAATGCC ATTGTGATCA ACACCGGTGA TCAGATTGAG GTCCTGAGCA ATGGAAGATA CAAGAGTTGT
TGGCACAGGG TTCTGGCCAC TCCAGATGGG AACAGAAGAT CAATTGCCTC CTTCTATAAC CCATCATTCA AGGCCACCAT
ATGTCCTGCA CCCCAACTCG TGGAAAAACA AGACCAACAA GTGGATGACA CTTATCCTAA GTTTGTTTTT GGTGATTACA
TGTCTGTCTA TGCTGAGCAG AAGTTCCTTC CGAAGGAACC AAGGTTCCGA GCTGTTAGGG CCATGTGAAG AAACCACTTG
CTTTCCGCAT AAAAAATACC ACTTTTTCCT TTTTTTTTCT ATATTTTCTT TGTTTTCGGG TTTTTGATAC CATAAGATAT
GCTTGATAGT AGCAAAGAAT ACCATTTGGT TGTCATTCTC TACACAATCG AAAATCACCA TGGGTATTTA GTATTGCCTT
TTTCAGGATT TTGTCTCCTC CTGATGTCAT GGGGGAACTA GTGTGTATCC ATCTGTGCTT GCATGGTACA ATAGTTCTAT
TAGATGAATT CTACTATAAA GTTGTCCATC ATAAATTTCT CTTCATTCTT TCCTTTTGTA 

>Vigan.02G140700.01
AATATGATGC ATCACCTGAA AGTGAAGGCC TTTTGTTGTA GACTTGTATG CTAAAAACAA GCAGTAACTC CCAAAGCAAG
CATTGACATA AGAATTTTTT TAATTAAATG TATCACCGTC TGTGACCTAA TTCTAACGGC TGCTTACTTT TAAAGGGAAC
ATATACTATT GGTTGATATC CAACTATGTA TCCAATAAGG TGGGAAGTTT TGCTATAAAT AGCCATAGGT ACTTCCCACC
CAAACCACAG CACAAAACAA CACTTGTTAT TATCTCTTTC CCTCTCTCAG ACTTCCACTC TATAACTTTT ATCACTTTTT
TGCACCTTTC TCATCTAATG GCAATTCCAG TGATTGATTT TTCAAAGCTG AATGGAGAAG AAAGAGCAAA AACTATGGCT
CAGATTGCTA ATGGCTGTGA AGAGTGGGGA TTTTTTCAGT TGATCAACCA TGGCATTCCA GAGGAACTCC TTGAGAGGGT
GAAGAAGGTT GCCTCTGAGT TTTATAAGCT GGAAAGAGAG GAGAATTTCA AGAAGTCGAC ATCTGTGAAG CTACTGAGTG
ATTTAGCTGA AAAGAAGGAC AGTGAAAAGC AGGAGTATGT GGATTGGGAG GACGTTATCA CTCTCCTTGA TGATAACGAG
TGGCCAGAAA AAACACCAGG CTTCAGGGAA ACCATGGCGG AATATCGGTG TGAGTTGAAG AAATTGGCGG AGAGGATGAT
GGAGGTGATG GATGAGAATC TGGAGTTACC CAAAGGATAC ATCAAGAAGG CACTGAATGG TGGAGATGGA GAGGGTGCAT
TCTTTGGCAC CAAGGTGAGC CACTACCCTC CATGTCCCCA TCCAGAGCTT GTGAAAGGTC TGCGAGCTCA CACTGATGCA
GGAGGTGTCA TCCTTCTCTT CCAAGATGAC AAGGTTGGTG GCCTTCAGAT GCTCAAAGAT GGGAAATGGA TTGATGTGCA
ACCTCTGCCA AATGCCATTG TGATCAACAC CGGTGATCAG ATTGAGGTCC TGAGCAATGG AAGATACAAG AGTTGTTGGC
ACAGGGTTCT GGCCACTCCA GATGGGAACA GAAGATCAAT TGCCTCCTTC TATAACCCAT CATTCAAGGC CACCATATGT
CCTGCACCCC AACTCGTGGA AAAACAAGAC CAACAAGTGG ATGACACTTA TCCTAAGTTT GTTTTTGGTG ATTACATGTC
TGTCTATGCT GAGCAGAAGT TCCTTCCGAA GGAACCAAGG TTCCGAGCTG TTAGGGCCAT GTGAAGAAAC CACTTGCTTT
CCGCATAAAA AATACCACTT TTTCCTTTTT TTTTCTATAT TTTCTTTGTT TTCGGGTTTT TGATACCATA AGATATGCTT
GATAGTAGCA AAGAATACCA TTTGGTTGTC ATTCTCTACA CAATCGAAAA TCACCATGGG TATTTAGTAT TGCCTTTTTC
AGGATTTTGT CTCCTCCTGA TGTCATGGGG GAACTAGTGT GTATCCATCT GTGCTTGCAT GGTACAATAG TTCTATTAGA
TGAATTCTAC TATAAAGTTG TCCATCATAA ATTTCTCTTC ATTCTTTCCT TTTGTA

>Vigan.02G140700.01
ATGGCAATTC CAGTGATTGA TTTTTCAAAG CTGAATGGAG AAGAAAGAGC AAAAACTATG GCTCAGATTG CTAATGGCTG
TGAAGAGTGG GGATTTTTTC AGTTGATCAA CCATGGCATT CCAGAGGAAC TCCTTGAGAG GGTGAAGAAG GTTGCCTCTG
AGTTTTATAA GCTGGAAAGA GAGGAGAATT TCAAGAAGTC GACATCTGTG AAGCTACTGA GTGATTTAGC TGAAAAGAAG
GACAGTGAAA AGCAGGAGTA TGTGGATTGG GAGGACGTTA TCACTCTCCT TGATGATAAC GAGTGGCCAG AAAAAACACC
AGGCTTCAGG GAAACCATGG CGGAATATCG GTGTGAGTTG AAGAAATTGG CGGAGAGGAT GATGGAGGTG ATGGATGAGA
ATCTGGAGTT ACCCAAAGGA TACATCAAGA AGGCACTGAA TGGTGGAGAT GGAGAGGGTG CATTCTTTGG CACCAAGGTG
AGCCACTACC CTCCATGTCC CCATCCAGAG CTTGTGAAAG GTCTGCGAGC TCACACTGAT GCAGGAGGTG TCATCCTTCT
CTTCCAAGAT GACAAGGTTG GTGGCCTTCA GATGCTCAAA GATGGGAAAT GGATTGATGT GCAACCTCTG CCAAATGCCA
TTGTGATCAA CACCGGTGAT CAGATTGAGG TCCTGAGCAA TGGAAGATAC AAGAGTTGTT GGCACAGGGT TCTGGCCACT
CCAGATGGGA ACAGAAGATC AATTGCCTCC TTCTATAACC CATCATTCAA GGCCACCATA TGTCCTGCAC CCCAACTCGT
GGAAAAACAA GACCAACAAG TGGATGACAC TTATCCTAAG TTTGTTTTTG GTGATTACAT GTCTGTCTAT GCTGAGCAGA
AGTTCCTTCC GAAGGAACCA AGGTTCCGAG CTGTTAGGGC CATGTGA

>Vigan.02G140700.01
MAIPVIDFSK LNGEERAKTM AQIANGCEEW GFFQLINHGI PEELLERVKK VASEFYKLER EENFKKSTSV KLLSDLAEKK
DSEKQEYVDW EDVITLLDDN EWPEKTPGFR ETMAEYRCEL KKLAERMMEV MDENLELPKG YIKKALNGGD GEGAFFGTKV
SHYPPCPHPE LVKGLRAHTD AGGVILLFQD DKVGGLQMLK DGKWIDVQPL PNAIVINTGD QIEVLSNGRY KSCWHRVLAT
PDGNRRSIAS FYNPSFKATI CPAPQLVEKQ DQQVDDTYPK FVFGDYMSVY AEQKFLPKEP RFRAVRAM*