GBrowse Details

Vigan.02G131200.01

Basic Information:
Name: Vigan.02G131200.01
Multiple alignment
Variant Information
Position: Chr02:11732833..11735743 (+ strand)
Length: 2911
Functional Information:
Description: Similar to Thioredoxin superfamily protein isoform 3. [XP_007019024.1, Theobroma cacao]
InterPro: Glutaredoxin-like (IPR008554)
Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.31,7.92,10.69,15.37,12.45,7.59,5.79,7.13
Arabidopsis thaliana homolog: AT4G08280.1
Automatic updates:
Name: NM_001250127 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306069 (LOC100306069), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:11732833..11732921 (+ strand)
Length: 89
Type: five_prime_UTR
Position: Chr02:11732922..11733164 (+ strand)
Length: 243
Type: CDS
Position: Chr02:11733250..11733339 (+ strand)
Length: 90
Type: CDS
Position: Chr02:11735396..11735476 (+ strand)
Length: 81
Type: CDS
Position: Chr02:11735477..11735743 (+ strand)
Length: 267
Type: three_prime_UTR

>Vigan.02G131200.01 class=Sequence position=Chr02:11732833..11735743 (+ strand)
GTAAAATGGG CTTTTGCAAC AAAGCCTATG GTGTATATGT AAAGTTGGGC ATAAGCTGAG AGAAAATTTG AGTTGTGTGG
AAGAGAAGCA TGGTAGTGGG AAGTGCTTTA GGAGCTTTTG CAGTAGCAAG GCCATCGCCA CTTTTGTTGT TTAGAGGACA
AAAGGCTTTC AAATTCAGAC CTCTGTCGTC TTCATCTTCG TCTGCCGAAC CTTCTAGAAA GCTTGTTCTC TACTCTAAAC
CAGGTTGCTG TTTGTGCGAT GGCCTTAAAG AAAAGCTTCA TGCTGCATTC TTACTGGCCG GTCCCGATTC ACTTAACGAC
GTTGATTTGC AGGCATATCT CTTTCTCTCA CGTTGGTTGT TTTATTGGTG ACAATGGGTA CGAGGTTTTT ATTTGATTTT
TGCTTTTGTT TCGTCAGATA AGGGATATAA CCAGCAATCC CGAGTGGGAA AATGCTTATC AATACGAGAT ACCTGTGTTG
GCTAAGGTGC TTTCCGATGG CACCGAGGTT TGTTCCCTTA CGCACACTAC TCTTCTTCAT TCATTGATGA TTATGAAGCT
CTTTAATTCA ACACAGTGGG GGCTACTACT CGCATTGACG AGTGTGTAAC TAGAAAATTT TAGACGGGAA TGAAAATTGA
AAGGGTGGGA CTTGCTTAAA AAAATTAGGC TAAAAGAGGT TGTTTTGGGA CACTTTCTGC CCCGGAGACC TAGGTGATTG
CATCTGATTT TCATTGGTGA AGGGTTACAA GGTAGGCAAG TGCCTAATTT CTTTGAATCG TGATTTAGCA GGGATTCATG
TTTCTCGTAG AAGTGTGTTA GCAAGCAAAC TATAAGTCAT CCAAATAATG CAAGGCCCAA AAGGATTACT ACCACACCAG
CCCATTTGAA GGATTATGTT CCATAAAAAA CCTCTTTGTT TCTAGAAGTG CCAGGTCATG TTTTTTCACT GCATCAGAAT
AATTCAGTTA TGCATTTTGG AAGATTTGCT TTCGATCTTT GTAGATTTCC TTACCCACCA AATCAGGAAT ACCCTTTGAT
TGTAACCAAC TGTGATATGA ATATTCCTTG TAATGGTTTT ATATAGATTT TGTATGAATG AAAAGGGGAG GAAAAATTCT
ATCATCTCTG TCTCTTCCCT TATTCTGTTT CAGGGGCTCC CTTAGCCATT AATTAAGGAA GTGAAACCTA ACAAAGTGTG
TGTCCCCCAC TAGGTTTTCA TAATGTCTTT AAATAGTTAA AGTTTGATGC TTGTATTTGT ATGCAAACCT GCAATCAGTA
GTAGGACAAA GAATTTTCCT GGAGATTTGA ATATCATCTT TGAATGACTG ATATCTTTTG CAGTTTTTTC TACTCAAACT
AAAAACAAAC ATTAGGAAAC CTCTCCTACT TTTTTGGTTT TATTAAGTCC TGAATTACTT GACTCTTGGA AGATTTTTAT
CTCCTTCAAG TATTCCCTAT TTGCAAACCT ACCAGAATTC GTTTTTGAAT TTGATATCAC AATTATTCAT CCTTGCTTTC
CCCAACATAA CATGCAGCCA TCTAGTTTGA ACTCAGCTTA TTGTTGATCA CTATTGACGA ACTTCTAACT TTTTCATTTG
AGTCTTCGTT GTGTCTTTTT ATTTGAAGAT GAATAATTGG TCCAATTTGT TAGCATAGTT GTTTGACTCC TTATTAAGCT
CATTCCCCTT CTAGTTTTCA CTATTATGTC ATGGTTTTGG TTATAGTACT TAGTTTGCGG TATATTGGTG TTTGCATATC
ATTCGGACCT TAACTGTTGG ATAGTCAGGT CTTACATTCA TACTTAGTCT GAATTTTGTT TAATATTTAG ATGTAATTTA
TTGCACACGG TGATTATAGT ACGCCATTGT GCCGGTAGAT ACTGAACTGT GGGCTTATGA AATATATTTG ATATAACCCC
AAAATGAACA CAACTAAAGC CTAAACAAAT AGGGCATAGA GTGTTAGCAA AGAAGTACTA AGAGATACCA TCTTTGAAAA
GAAAAAGAAG AGTGTTTCGT TTTAAGACTC TTTATAATTG TCTATAATTT ATTTGAAATT TACAAATTCT GGTGACCCTC
CAAAATGAGA AATGGGGATC CTCCAAAATT TATGATTTTC AATTACTTTC AACGAAATGG TAGATTGAAT GTTGGAGGGT
GTTGCTAACA TTCCTCGAAG AAAAGTCCAA AGAAACAACT TACTAATCTT AATCTATCAA AGCTTTTCCC TTTCCTTCTT
AATCATAATC CTCATTGAAA ACACAATTTG TAACTTTGGC CATCTTAAGC CTGAAGAACT ACCCATATAA GTCTGTCTTT
CTCATTTCGA AGTTGCATCG CAATTTGCTC AACCATCTTT ATGAAGATGG ACCTCATGGA AGCAAACCAG TTCATTAGAA
GTTTTTTAGT CCTATTAGTT TCTGATTTTA TGGTCCAACT CCAACTAATT GATACTGTGT TCTCCCTTTC TTGCAATATT
CATGACAACC AAGTAATAAT AAAATAAGAT TCAACATAGA GATGGAATGA TTCTGTCTGA GTAAACTTTG TTCTGTTTTC
TAGGTGGCTT TACCACGATT GTCCCCACGT CTAGGAGTGG AGCTCCTCCA TAAGAAGATA GCGGCTGCTC TGAAACAACA
ATAAAGGTGT CTCAGTTTTT GTTTTGTAAC TTTACATTTA CCATTTAAAA ACCATTTTTG TAAATTATAT TTGCTGTTTT
TCATTATTCT TTTAAGTTTT CTGTGAAGTA TAGTGTATGA ATAAATCAAA TACATAAAGC CGCCTCTGAT GTGTGGAAGT
TGCACAAACA TATACTCACT AACACCGAAG AAGTTCCTTA CATATTAAAA ATTAGAGGAA AGTTTAATGC ATTTTCTTAC
GTCTCTGAAA CACTGTATAA CAATGATCTT T

>Vigan.02G131200.01
GTAAAATGGG CTTTTGCAAC AAAGCCTATG GTGTATATGT AAAGTTGGGC ATAAGCTGAG AGAAAATTTG AGTTGTGTGG
AAGAGAAGCA TGGTAGTGGG AAGTGCTTTA GGAGCTTTTG CAGTAGCAAG GCCATCGCCA CTTTTGTTGT TTAGAGGACA
AAAGGCTTTC AAATTCAGAC CTCTGTCGTC TTCATCTTCG TCTGCCGAAC CTTCTAGAAA GCTTGTTCTC TACTCTAAAC
CAGGTTGCTG TTTGTGCGAT GGCCTTAAAG AAAAGCTTCA TGCTGCATTC TTACTGGCCG GTCCCGATTC ACTTAACGAC
GTTGATTTGC AGATAAGGGA TATAACCAGC AATCCCGAGT GGGAAAATGC TTATCAATAC GAGATACCTG TGTTGGCTAA
GGTGCTTTCC GATGGCACCG AGGTGGCTTT ACCACGATTG TCCCCACGTC TAGGAGTGGA GCTCCTCCAT AAGAAGATAG
CGGCTGCTCT GAAACAACAA TAAAGGTGTC TCAGTTTTTG TTTTGTAACT TTACATTTAC CATTTAAAAA CCATTTTTGT
AAATTATATT TGCTGTTTTT CATTATTCTT TTAAGTTTTC TGTGAAGTAT AGTGTATGAA TAAATCAAAT ACATAAAGCC
GCCTCTGATG TGTGGAAGTT GCACAAACAT ATACTCACTA ACACCGAAGA AGTTCCTTAC ATATTAAAAA TTAGAGGAAA
GTTTAATGCA TTTTCTTACG TCTCTGAAAC ACTGTATAAC AATGATCTTT 

>Vigan.02G131200.01
ATGGTAGTGG GAAGTGCTTT AGGAGCTTTT GCAGTAGCAA GGCCATCGCC ACTTTTGTTG TTTAGAGGAC AAAAGGCTTT
CAAATTCAGA CCTCTGTCGT CTTCATCTTC GTCTGCCGAA CCTTCTAGAA AGCTTGTTCT CTACTCTAAA CCAGGTTGCT
GTTTGTGCGA TGGCCTTAAA GAAAAGCTTC ATGCTGCATT CTTACTGGCC GGTCCCGATT CACTTAACGA CGTTGATTTG
CAGATAAGGG ATATAACCAG CAATCCCGAG TGGGAAAATG CTTATCAATA CGAGATACCT GTGTTGGCTA AGGTGCTTTC
CGATGGCACC GAGGTGGCTT TACCACGATT GTCCCCACGT CTAGGAGTGG AGCTCCTCCA TAAGAAGATA GCGGCTGCTC
TGAAACAACA ATAA

>Vigan.02G131200.01
MVVGSALGAF AVARPSPLLL FRGQKAFKFR PLSSSSSSAE PSRKLVLYSK PGCCLCDGLK EKLHAAFLLA GPDSLNDVDL
QIRDITSNPE WENAYQYEIP VLAKVLSDGT EVALPRLSPR LGVELLHKKI AAALKQQ*