GBrowse Details

Vigan.02G128800.01

Basic Information:
Name: Vigan.02G128800.01
Multiple alignment
Variant Information
Position: Chr02:11422937..11425180 (+ strand)
Length: 2244
Functional Information:
Description: Similar to C2H2-like zinc finger protein. [XP_007018982.1, Theobroma cacao]
GO: Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950)
InterPro: Poly(ADP-ribose) polymerase, catalytic domain (IPR012317)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.06,0.58,7.03,7.43,0.38,3.83,1.74,3.39
Automatic updates:
Name: NM_001317619 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100817333 (LOC100817333), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:11422937..11423218 (+ strand)
Length: 282
Type: five_prime_UTR
Position: Chr02:11423219..11423891 (+ strand)
Length: 673
Type: CDS
Position: Chr02:11424248..11424852 (+ strand)
Length: 605
Type: CDS
Position: Chr02:11424853..11425180 (+ strand)
Length: 328
Type: three_prime_UTR

>Vigan.02G128800.01 class=Sequence position=Chr02:11422937..11425180 (+ strand)
CGGGGGGACC CGTTGGCCAA TAAACCCTTT ACTTTCCCAC TATTTAGAAA TAAAAAAGAA CTCTTCAACC TAGAAAAATC
AATGGTGAGA GATGCTCATC ATAAAGTCAT ATATCTCCCC CACGGGAAGA GAGCCACAGG TTCTTCAAAG CTAAATGACT
TGAGAGGCGA CTTAACACTT TCATTCAACT CCTAAATGAC TCAAATTCAG AATCTTGTTC TAGTTCCAAC CTTGTTCTAA
AGCCATCATT TGTAAGCTCA AGAAACTTCC ATCCTTTCTA CAATGAGCAA ACCCAAAACC CAAAGAAAAC CAACCATTAC
CAAACATGTC AGCCAAAACC AAAACCAAGA GCTACAGAAA ACAGAAAAAC AACCTTCATG GGTGGTAAGA GGCCTGTTGG
CTTGTAGGAA TGTTCAAATC CAGCAACATC AGCAGCAGCA GCAGAAGGAA GCAAAACCAC CTCCAGAAGC AAAAGATCAT
CAACACAGGA AAAAACAGGA ACAGAGAAAG CTGCAAGAGG AAAGAATCCC GGAAGATAAC AGCAAGAAGT GCAAGAAGAT
GAAGTGCTCA GGTTCGCTTT GTAACAACAC CAAGATCACG GCAAAGCCGG ACACATCAAC CCCAGATATC CACAAGAAAA
GGTTGTTTCT AAATGGATGC AACAGCAACG ATGCTTCCAG CAGATCCATG AAAGCACCTC TTACCGAACA CAATGGACCC
GTTTCAGCTT CTTCCTCTTC ATTGTCAGCA TCTTCCAATT CTTCTGGCGC TGGCTCTTTC AGGGGAATGC CATTCAGGAG
ACTTTCCGGC TGTTATGAGT GTAGAATGGT GGTAGACCCG GTTCTAGGCT TCACTAGAGA TCCTTCTCTC AGGAGTAGCA
TTTGTTCTTG CCCCGACTGT GGCGAGATCA TGAAAGCTGA AAGCTTGGAG CATCACCAGG CAGTCAAACA TGCAGGTATC
GTATGATGTG ATGCTTTCAA TTTTCATTAA GAAAATAAGC TTTTCTCTGC ATTTTTATTT AAGTTTTCAG TGTGTTTGGT
CTCACATGTA TCTGATTCTA TGAAGCTAAC AGGTGTAGTT TCTACATTGT AAGCATGACA TATATCTCAT CTAATTTTTT
CTTCAAAACT GATATTCATA GGTTAGTTTT AGTGTAATTT GCTTTATTTT CTTGTTCTCT GGGATGAAGT GTGCTTATTT
ATATAAATGT TGATGTGTTT GTCACTTTAT CATCTATGAT TTTAATGATG ATACCAATGT ACCATGACTA ATGATTTACC
TACTTTTTTT TCTTCCGGTT ACCAATTTCA GTTTCTGAAC TGGGTCCAGA AGACACCAGC AAGAACATAG TTGAAATAAT
ATTCCACTCC AGCTGGCTGA AGAAGCAATC TCCAGTGTGC AAAATAGACC GCATCCTCAA GGTCCACAAC ACCCAGAAAA
CCATTACCAG ATTCGAAGAA TACAGAGATT CCATAAAAGC AAAGGCCACG AAACTCCCCA AGAAACACCC ACGTTGCATA
GCAGATGGCA ACGAGCTACT CAGGTTTCAC TGCACCTCCT TCGCGTGTTC TCTAGGCCTA AACGGGTCCT CCAACTTGTG
CAACTCCGTT CCACAGTGCA ACATTTGCAG CATAATCAAG CACGGGTTCA AGGTTACCGG AGGGAGCGGT ATCTTGACAA
CGGCAACGAG TGGGAAGGCT CACGACAAGG CGTGTGTGGA TGAGAGTGAA GAGAAGAGAG CAATGCTGGT TTGTCGGGTT
ATAGCAGGAA GGGTGAAGAA GAATGCAGAA GGAGGCATGG AGGAGTATGA TTCGGTTGCA GGGGCTGTTG GGGCTTATTC
CAATTTGGAT GAGTTGGTTG TATTCAACCC AAGAGCCATT TTGCCTTGCT TTGTTGTAAT CTATAGTGGC TTTTGATGAT
ATGTGTTGTT GGATTGGGGG GTGAGTGAGG TCACAACTTC CTTTCATATA TCAGTTCCTT TGCTTTGTTA GCTCTTTTTA
AGTTCTAGCA TCATCTGGTT GATTATTTCG TTGGTGCTTT ATGGGGGGAG TATAGATCAG TCTCAGATCA TTTTTGTATG
TGTTGGCTGG TATCACTGAC TCTCCAATCC ATGGCAGATT TAATCAACGA CTGTATATTA CTATAACAGT TATATATTAA
CCGCATGATA AGCCTTTATT TTCTGTACAT TTAGCTAAGG TAAGACTTTT GTCTCATTTA TTGTATTTCA GATGACTATT
AAAG

>Vigan.02G128800.01
CGGGGGGACC CGTTGGCCAA TAAACCCTTT ACTTTCCCAC TATTTAGAAA TAAAAAAGAA CTCTTCAACC TAGAAAAATC
AATGGTGAGA GATGCTCATC ATAAAGTCAT ATATCTCCCC CACGGGAAGA GAGCCACAGG TTCTTCAAAG CTAAATGACT
TGAGAGGCGA CTTAACACTT TCATTCAACT CCTAAATGAC TCAAATTCAG AATCTTGTTC TAGTTCCAAC CTTGTTCTAA
AGCCATCATT TGTAAGCTCA AGAAACTTCC ATCCTTTCTA CAATGAGCAA ACCCAAAACC CAAAGAAAAC CAACCATTAC
CAAACATGTC AGCCAAAACC AAAACCAAGA GCTACAGAAA ACAGAAAAAC AACCTTCATG GGTGGTAAGA GGCCTGTTGG
CTTGTAGGAA TGTTCAAATC CAGCAACATC AGCAGCAGCA GCAGAAGGAA GCAAAACCAC CTCCAGAAGC AAAAGATCAT
CAACACAGGA AAAAACAGGA ACAGAGAAAG CTGCAAGAGG AAAGAATCCC GGAAGATAAC AGCAAGAAGT GCAAGAAGAT
GAAGTGCTCA GGTTCGCTTT GTAACAACAC CAAGATCACG GCAAAGCCGG ACACATCAAC CCCAGATATC CACAAGAAAA
GGTTGTTTCT AAATGGATGC AACAGCAACG ATGCTTCCAG CAGATCCATG AAAGCACCTC TTACCGAACA CAATGGACCC
GTTTCAGCTT CTTCCTCTTC ATTGTCAGCA TCTTCCAATT CTTCTGGCGC TGGCTCTTTC AGGGGAATGC CATTCAGGAG
ACTTTCCGGC TGTTATGAGT GTAGAATGGT GGTAGACCCG GTTCTAGGCT TCACTAGAGA TCCTTCTCTC AGGAGTAGCA
TTTGTTCTTG CCCCGACTGT GGCGAGATCA TGAAAGCTGA AAGCTTGGAG CATCACCAGG CAGTCAAACA TGCAGTTTCT
GAACTGGGTC CAGAAGACAC CAGCAAGAAC ATAGTTGAAA TAATATTCCA CTCCAGCTGG CTGAAGAAGC AATCTCCAGT
GTGCAAAATA GACCGCATCC TCAAGGTCCA CAACACCCAG AAAACCATTA CCAGATTCGA AGAATACAGA GATTCCATAA
AAGCAAAGGC CACGAAACTC CCCAAGAAAC ACCCACGTTG CATAGCAGAT GGCAACGAGC TACTCAGGTT TCACTGCACC
TCCTTCGCGT GTTCTCTAGG CCTAAACGGG TCCTCCAACT TGTGCAACTC CGTTCCACAG TGCAACATTT GCAGCATAAT
CAAGCACGGG TTCAAGGTTA CCGGAGGGAG CGGTATCTTG ACAACGGCAA CGAGTGGGAA GGCTCACGAC AAGGCGTGTG
TGGATGAGAG TGAAGAGAAG AGAGCAATGC TGGTTTGTCG GGTTATAGCA GGAAGGGTGA AGAAGAATGC AGAAGGAGGC
ATGGAGGAGT ATGATTCGGT TGCAGGGGCT GTTGGGGCTT ATTCCAATTT GGATGAGTTG GTTGTATTCA ACCCAAGAGC
CATTTTGCCT TGCTTTGTTG TAATCTATAG TGGCTTTTGA TGATATGTGT TGTTGGATTG GGGGGTGAGT GAGGTCACAA
CTTCCTTTCA TATATCAGTT CCTTTGCTTT GTTAGCTCTT TTTAAGTTCT AGCATCATCT GGTTGATTAT TTCGTTGGTG
CTTTATGGGG GGAGTATAGA TCAGTCTCAG ATCATTTTTG TATGTGTTGG CTGGTATCAC TGACTCTCCA ATCCATGGCA
GATTTAATCA ACGACTGTAT ATTACTATAA CAGTTATATA TTAACCGCAT GATAAGCCTT TATTTTCTGT ACATTTAGCT
AAGGTAAGAC TTTTGTCTCA TTTATTGTAT TTCAGATGAC TATTAAAG

>Vigan.02G128800.01
ATGAGCAAAC CCAAAACCCA AAGAAAACCA ACCATTACCA AACATGTCAG CCAAAACCAA AACCAAGAGC TACAGAAAAC
AGAAAAACAA CCTTCATGGG TGGTAAGAGG CCTGTTGGCT TGTAGGAATG TTCAAATCCA GCAACATCAG CAGCAGCAGC
AGAAGGAAGC AAAACCACCT CCAGAAGCAA AAGATCATCA ACACAGGAAA AAACAGGAAC AGAGAAAGCT GCAAGAGGAA
AGAATCCCGG AAGATAACAG CAAGAAGTGC AAGAAGATGA AGTGCTCAGG TTCGCTTTGT AACAACACCA AGATCACGGC
AAAGCCGGAC ACATCAACCC CAGATATCCA CAAGAAAAGG TTGTTTCTAA ATGGATGCAA CAGCAACGAT GCTTCCAGCA
GATCCATGAA AGCACCTCTT ACCGAACACA ATGGACCCGT TTCAGCTTCT TCCTCTTCAT TGTCAGCATC TTCCAATTCT
TCTGGCGCTG GCTCTTTCAG GGGAATGCCA TTCAGGAGAC TTTCCGGCTG TTATGAGTGT AGAATGGTGG TAGACCCGGT
TCTAGGCTTC ACTAGAGATC CTTCTCTCAG GAGTAGCATT TGTTCTTGCC CCGACTGTGG CGAGATCATG AAAGCTGAAA
GCTTGGAGCA TCACCAGGCA GTCAAACATG CAGTTTCTGA ACTGGGTCCA GAAGACACCA GCAAGAACAT AGTTGAAATA
ATATTCCACT CCAGCTGGCT GAAGAAGCAA TCTCCAGTGT GCAAAATAGA CCGCATCCTC AAGGTCCACA ACACCCAGAA
AACCATTACC AGATTCGAAG AATACAGAGA TTCCATAAAA GCAAAGGCCA CGAAACTCCC CAAGAAACAC CCACGTTGCA
TAGCAGATGG CAACGAGCTA CTCAGGTTTC ACTGCACCTC CTTCGCGTGT TCTCTAGGCC TAAACGGGTC CTCCAACTTG
TGCAACTCCG TTCCACAGTG CAACATTTGC AGCATAATCA AGCACGGGTT CAAGGTTACC GGAGGGAGCG GTATCTTGAC
AACGGCAACG AGTGGGAAGG CTCACGACAA GGCGTGTGTG GATGAGAGTG AAGAGAAGAG AGCAATGCTG GTTTGTCGGG
TTATAGCAGG AAGGGTGAAG AAGAATGCAG AAGGAGGCAT GGAGGAGTAT GATTCGGTTG CAGGGGCTGT TGGGGCTTAT
TCCAATTTGG ATGAGTTGGT TGTATTCAAC CCAAGAGCCA TTTTGCCTTG CTTTGTTGTA ATCTATAGTG GCTTTTGA

>Vigan.02G128800.01
MSKPKTQRKP TITKHVSQNQ NQELQKTEKQ PSWVVRGLLA CRNVQIQQHQ QQQQKEAKPP PEAKDHQHRK KQEQRKLQEE
RIPEDNSKKC KKMKCSGSLC NNTKITAKPD TSTPDIHKKR LFLNGCNSND ASSRSMKAPL TEHNGPVSAS SSSLSASSNS
SGAGSFRGMP FRRLSGCYEC RMVVDPVLGF TRDPSLRSSI CSCPDCGEIM KAESLEHHQA VKHAVSELGP EDTSKNIVEI
IFHSSWLKKQ SPVCKIDRIL KVHNTQKTIT RFEEYRDSIK AKATKLPKKH PRCIADGNEL LRFHCTSFAC SLGLNGSSNL
CNSVPQCNIC SIIKHGFKVT GGSGILTTAT SGKAHDKACV DESEEKRAML VCRVIAGRVK KNAEGGMEEY DSVAGAVGAY
SNLDELVVFN PRAILPCFVV IYSGF*