GBrowse Details

Vigan.02G122700.01

Basic Information:
Name: Vigan.02G122700.01
Multiple alignment
Variant Information
Position: Chr02:10620911..10622738 (+ strand)
Length: 1828
Functional Information:
Description: Similar to transport and Golgi organization 2 homolog. [XP_004500613.1, Cicer arietinum]
InterPro: Protein of unknown function DUF833 (IPR008551)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,9.84,0.82,0.00,0.00,0.09,0.82
Automatic updates:
Name: NM_001254042 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ser/Thr-rich protein T10 in DGCR region-like (LOC100820362), transcript variant 1, mRNA.
PubMed ID: 18927222 NCBI(pubmed)
14624337 NCBI(pubmed)
Status: Known Variant
Name: NM_001415785 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ser/Thr-rich protein T10 in DGCR region-like (LOC100820362), transcript variant 2, mRNA.
PubMed ID: 18927222 NCBI(pubmed)
14624337 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:10620911..10621065 (+ strand)
Length: 155
Type: five_prime_UTR
Position: Chr02:10621066..10621148 (+ strand)
Length: 83
Type: CDS
Position: Chr02:10621254..10621437 (+ strand)
Length: 184
Type: CDS
Position: Chr02:10621660..10621866 (+ strand)
Length: 207
Type: CDS
Position: Chr02:10621971..10622162 (+ strand)
Length: 192
Type: CDS
Position: Chr02:10622238..10622372 (+ strand)
Length: 135
Type: CDS
Position: Chr02:10622373..10622738 (+ strand)
Length: 366
Type: three_prime_UTR

>Vigan.02G122700.01 class=Sequence position=Chr02:10620911..10622738 (+ strand)
GCTTTAATGA AAAAAAAATT GGATACAAAA AATGTGCCAA CTTAGCTTGA TAGCCTATAA AGCCATTTCG TCACTCAGAA
AACTACCAAC ATACATTTGC TGTATTGCTG GAAGCTTTGT TTGGTCTGTG GTGCACCCGA CTCAACAACT GAACGATGTG
TATAGCTTTG TTTCTTTGGC AATGCCACCC ACTGTACCCT TTTCTACTTT TGAACAACAG AGATGAATAT CACAGTAGGC
AAGCATTCTT CTTATTGCTG TTTATTTTTT CTTTATCTAA GTTTCTGGCA CCTGATGACT TGTGGAAAAT GCATGCACCT
ACACAATTGT TACTTGGATG AAGGCCTACG AAGCCTGTGT GTTGGTGGGA AGATTGTGAT ATATTGGGAG GAAGAGACGA
AATAGCAATG GGAACATGGT TGGCTTGTTC TACGCAAGGA AGGGTGGCTT TTCTCACCAA TGTTTTGGAG CTTCATACCC
TCCCTGAGGC CAAAAGTCGT GGAGACCTAC CCGTTCTATT TCTCAAGGTA TGCTTAGAAT CAACATTTTT TTTTTTTGTA
ATTGGACTGT CTACCAGCAT AGAGAAAATG AAATCAAGCA TGTTCAATAT GAGAGAAAGA GATAGAATGA TCCAATTCTC
TGAAAGCATG TATCCCTGAT ACAAGACTAA GATCTACGTT GTTATTCTTT TAAGATTTTA GGTTCTTTAA CTTTTTTTAT
ATAAACTTTT TGTGGTTTAC TGATGACAGA GCAGCAAGCA ACCGAAAGAA TTTGCAGAAA GCCTGAAGTC AGAGGCTCAT
TATTACAACG GATTCAACTT AATGTTGGTG GATATTGAGT CGAAATCAAT GGTGTACGTC TCGAACAGGC CAAAGGGACA
AGCTATTACC ATTGAAGAGG TTGCACCAGG GCTGCATGTA CTTTCAAACG ACAAGTTAGA TTCGCCGTGG CACAAGGTTA
ATAGATTCGT CTTCTTATTA CATTAAAAGA ACATAACTTA CTAAAGTAAT AGATTCTCTA CCAAAAGAGT CCTAATTTGA
GTCAGGTGAT GTTTTTGCAG TCTCTACGGC TTGAATTAAG TTTCAAAGAA CACGTTGCCA AATACGGGGA AGGCGAAATT
GGCGTAAAGG AGGTGATTGA AAAGGTAATG AAGGACAGAG TTAAAGCCGA CAAAAGCTTA CTACCTCGAA TATGCTCACC
TGATTGGGAA TTCAATCTCA GCTCCATTTT TGTTGAAGTA GAAACGCCAC TGGTATGTTA ACAATTCATT GAAGCCCACA
TTATTAATCA TGGAATGGAA CCTTTGAGTT CATGTATTTG CATGCAGGGT GTATATGGAA CAAGGAGTAG TGCTGCATTG
ACCGTAAGAT CAAGTGGGGA AGCAAGTTTT TATGAGGTTT ATCTGGATGA TGCCAAGTGG AAGGAACATG TAATCGATTT
CCATATTGGG AAGTTGAAGT AGAGAACAGT CACACGGATG AATTGGCCTG GGCAAGAGTA ATATATGACA CAATTCTAGC
TTTAGTATGC TCAAGTAATG AACTCTATCA TCATTCATGA ATGAGGAAGA ATCAAAATCA ATTGATCCAG TTTCTTCATA
TTTATGTAAT TCATGTTTGA TGAGATATGC CGTGAATAAG CACTGGTAAT AGAGTGCATG CATGTATGTG GATTATTAGC
CAATGAAATA TAGTCATTGA TAACATACAA AATTGCCCAC ATAGGAGAAA GCTGCGACGA ACCATGAATC CAATATTCAC
TCACGCTGCA ATAGATGACA CAATTCCAGC TTTATGTTCA TCGGCTCTAA TTTTTTTCAT AAAAAAAC

>Vigan.02G122700.01
GCTTTAATGA AAAAAAAATT GGATACAAAA AATGTGCCAA CTTAGCTTGA TAGCCTATAA AGCCATTTCG TCACTCAGAA
AACTACCAAC ATACATTTGC TGTATTGCTG GAAGCTTTGT TTGGTCTGTG GTGCACCCGA CTCAACAACT GAACGATGTG
TATAGCTTTG TTTCTTTGGC AATGCCACCC ACTGTACCCT TTTCTACTTT TGAACAACAG AGATGAATAT CACAGTAGGC
CTACGAAGCC TGTGTGTTGG TGGGAAGATT GTGATATATT GGGAGGAAGA GACGAAATAG CAATGGGAAC ATGGTTGGCT
TGTTCTACGC AAGGAAGGGT GGCTTTTCTC ACCAATGTTT TGGAGCTTCA TACCCTCCCT GAGGCCAAAA GTCGTGGAGA
CCTACCCGTT CTATTTCTCA AGAGCAGCAA GCAACCGAAA GAATTTGCAG AAAGCCTGAA GTCAGAGGCT CATTATTACA
ACGGATTCAA CTTAATGTTG GTGGATATTG AGTCGAAATC AATGGTGTAC GTCTCGAACA GGCCAAAGGG ACAAGCTATT
ACCATTGAAG AGGTTGCACC AGGGCTGCAT GTACTTTCAA ACGACAAGTT AGATTCGCCG TGGCACAAGT CTCTACGGCT
TGAATTAAGT TTCAAAGAAC ACGTTGCCAA ATACGGGGAA GGCGAAATTG GCGTAAAGGA GGTGATTGAA AAGGTAATGA
AGGACAGAGT TAAAGCCGAC AAAAGCTTAC TACCTCGAAT ATGCTCACCT GATTGGGAAT TCAATCTCAG CTCCATTTTT
GTTGAAGTAG AAACGCCACT GGGTGTATAT GGAACAAGGA GTAGTGCTGC ATTGACCGTA AGATCAAGTG GGGAAGCAAG
TTTTTATGAG GTTTATCTGG ATGATGCCAA GTGGAAGGAA CATGTAATCG ATTTCCATAT TGGGAAGTTG AAGTAGAGAA
CAGTCACACG GATGAATTGG CCTGGGCAAG AGTAATATAT GACACAATTC TAGCTTTAGT ATGCTCAAGT AATGAACTCT
ATCATCATTC ATGAATGAGG AAGAATCAAA ATCAATTGAT CCAGTTTCTT CATATTTATG TAATTCATGT TTGATGAGAT
ATGCCGTGAA TAAGCACTGG TAATAGAGTG CATGCATGTA TGTGGATTAT TAGCCAATGA AATATAGTCA TTGATAACAT
ACAAAATTGC CCACATAGGA GAAAGCTGCG ACGAACCATG AATCCAATAT TCACTCACGC TGCAATAGAT GACACAATTC
CAGCTTTATG TTCATCGGCT CTAATTTTTT TCATAAAAAA AC

>Vigan.02G122700.01
ATGTGTATAG CTTTGTTTCT TTGGCAATGC CACCCACTGT ACCCTTTTCT ACTTTTGAAC AACAGAGATG AATATCACAG
TAGGCCTACG AAGCCTGTGT GTTGGTGGGA AGATTGTGAT ATATTGGGAG GAAGAGACGA AATAGCAATG GGAACATGGT
TGGCTTGTTC TACGCAAGGA AGGGTGGCTT TTCTCACCAA TGTTTTGGAG CTTCATACCC TCCCTGAGGC CAAAAGTCGT
GGAGACCTAC CCGTTCTATT TCTCAAGAGC AGCAAGCAAC CGAAAGAATT TGCAGAAAGC CTGAAGTCAG AGGCTCATTA
TTACAACGGA TTCAACTTAA TGTTGGTGGA TATTGAGTCG AAATCAATGG TGTACGTCTC GAACAGGCCA AAGGGACAAG
CTATTACCAT TGAAGAGGTT GCACCAGGGC TGCATGTACT TTCAAACGAC AAGTTAGATT CGCCGTGGCA CAAGTCTCTA
CGGCTTGAAT TAAGTTTCAA AGAACACGTT GCCAAATACG GGGAAGGCGA AATTGGCGTA AAGGAGGTGA TTGAAAAGGT
AATGAAGGAC AGAGTTAAAG CCGACAAAAG CTTACTACCT CGAATATGCT CACCTGATTG GGAATTCAAT CTCAGCTCCA
TTTTTGTTGA AGTAGAAACG CCACTGGGTG TATATGGAAC AAGGAGTAGT GCTGCATTGA CCGTAAGATC AAGTGGGGAA
GCAAGTTTTT ATGAGGTTTA TCTGGATGAT GCCAAGTGGA AGGAACATGT AATCGATTTC CATATTGGGA AGTTGAAGTA
G

>Vigan.02G122700.01
MCIALFLWQC HPLYPFLLLN NRDEYHSRPT KPVCWWEDCD ILGGRDEIAM GTWLACSTQG RVAFLTNVLE LHTLPEAKSR
GDLPVLFLKS SKQPKEFAES LKSEAHYYNG FNLMLVDIES KSMVYVSNRP KGQAITIEEV APGLHVLSND KLDSPWHKSL
RLELSFKEHV AKYGEGEIGV KEVIEKVMKD RVKADKSLLP RICSPDWEFN LSSIFVEVET PLGVYGTRSS AALTVRSSGE
ASFYEVYLDD AKWKEHVIDF HIGKLK*