GBrowse Details

Vigan.02G111100.01

Basic Information:
Name: Vigan.02G111100.01
Multiple alignment
Variant Information
Position: Chr02:9280063..9283205 (+ strand)
Length: 3143
Functional Information:
Description: Similar to RING finger protein 214 isoform 1. [XP_007018191.1, Theobroma cacao]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:20.21,10.11,17.66,14.63,18.47,12.49,16.17,13.45
Automatic updates:
Name: NM_001254543 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100790753 (LOC100790753), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:9280063..9280346 (+ strand)
Length: 284
Type: five_prime_UTR
Position: Chr02:9280347..9280559 (+ strand)
Length: 213
Type: CDS
Position: Chr02:9281173..9281263 (+ strand)
Length: 91
Type: CDS
Position: Chr02:9281360..9281520 (+ strand)
Length: 161
Type: CDS
Position: Chr02:9282190..9282217 (+ strand)
Length: 28
Type: CDS
Position: Chr02:9282412..9282520 (+ strand)
Length: 109
Type: CDS
Position: Chr02:9282760..9282841 (+ strand)
Length: 82
Type: CDS
Position: Chr02:9282842..9283205 (+ strand)
Length: 364
Type: three_prime_UTR

>Vigan.02G111100.01 class=Sequence position=Chr02:9280063..9283205 (+ strand)
GTTGTTGTAA CGCAATGAGT AGACGGAACA ATTGGAGTAC ACGAAACCCA TCTTCGTAGA ATTGTGTTGT ATTTGTATTC
AAATGGAATC TCTTCTTTGG TTTCATTGAC AAACCACGCA CGGCCCAGAA CTCCGTCGCC ATCTATCGCC GTCGTGTTCG
TCACCGTCGT GGTCGCCGCC TCCTAAAACA CGGCACAACG AATCCAAAGT AAAGACCGTG TTTGGAAGCA TTTAATGTAA
ATCCCATGGG TACCAACCCT CTCTCTCTTC ATTAAACTAC GCAAATGGAT CTCAAAGCTT CGGCGGATCC GGACCCGGAC
CCGCTTCGCG TCAAGAGGAA GACCCTTGAG GCTGTGCTCT TGCAGTGTCA GAGAGCTCTC GAATTGATCA ACGCTGCTTC
TCCTTCATCT TCTGCTTCTG CTGAAGTCGA AGAAGAGGAT TGTCTGGCTG ACAGCGAAGC TGAGGCCATT GCGTCTACCG
ATCCTCTTGA CGACCAGGTA GTTCTTCTTT CCCTTCTAGG GTTTCGGTTT GTACGGAATT TTTATTTTTC TTATCTTCCA
ATATGACATG GCATATCAAT ATCACTCTTC TGCTGTTGAC AGCATTCATG ACAAAAATTT GTGTTGTTGA ATTTACGTTT
ATTTGCTAAT ACCGTTCTAG TGGTACAAGC GCTTTATCAT TGTGGATTTT CTAGTCCGTG TTGTGTTGTG TTGCTTGGGA
CTTTGATTTG GTCATCGGAT GCTTTGGTAG TAGTGTTCAT ACGGGGTCAA AAGGACAGTT ATAAAATTAG TTTTTTAGTA
TTTAAAAATA GAATAGAAAA TTTGGACAAA AACTTAGATA CACTTCCATA GGTATTTCTC ACGACAGAAG GGAAACCTTT
ATTACCTGAG TTACAAAGGT GAAACTCTAA TTTTTACTAG ATTAACGCCA AAAGCGACTA AAGACTTGCG TATAAGTTTT
GTTTTAGAAA TTCTTCATTA CAGACTTTAG GATATTGTTA CGGAATAATT GTTAATAGTA TGATTTTAGA ACCACCTTAA
TATGGGTAGT TATGGATATA ACTGAGCTGA TTATTCTTCC TAACACCACA GCCCATGTGT CTCAATGCAG TTACGTGATA
TGCTCAAATC AAGAGTTGAA TGCCCTGCCT TTCTTCAAAA GTTGGAGTGT GCTCAGGCAT CAGTTTCGCA GAATATATAT
GGTATCTTCT GCATTTTGGT GATTTAAATC AATGCTTTCT CTCCATTGTT TCAAATTTAG AATGATAATA AAAGAAAAAA
GTGATTGGTT GTGGCAGAAG AAGGTAATTC TTGGGATTTG GTTGGTGAAA ATGATCTCTG GGAAGGCCAA CGTGATGACT
TAGACCAAGA AGATTATGTA CTTGTTAGAC AAGAGGATGT AGTTGAGGGC ATCGCATGCT TCATGGCTGC ATATTTGCTA
TCAATTAAGC AGACTAAGGT ATGTGATATG TGTGTACTTA TTGTTCAGTT GCTCTATACT GTGTGTACGT GTTTTTGCTT
TTCTCTTGAA AACTGTGAGA ATCCTTTTCT TTTGCTCCAA ACTTCAATGT ACACTGGACT TTTTTCTTTG CTGTATCTGC
TTATACCTCC AAATATGCGA ATTCCAATTG GGGGAAATGA TTTGTATGTT TCTCGAAAGC TTTAGGGGAA TTTTCTTTTC
AGATCATCTT TAAAATTCTC TTTTGTATGT GTTGTCATTC ATGTTGTGCA GAAACGTGTA CAAATCATGT CAAGTCGATT
ATGTTTATGT GAAATGGGAA TAGAAAACAT TTAAAAAACA ATGGATACGG ATACAGTGAG GATGTATATT AAATAAAATA
CTTCATGTCA ACTTTTTTTT ATACTAAAAT AAATAGCAAG GCAGTGCTCG AATAGTCTCA ATTACTTAAT TTACAGGCCT
TTTCCATAGT CTGCTTCTCT GTAGCCCTTC TTATTCATGT GTTGGGCTAC AATCACTTGC ATTTTGTAAT AAGGAATGTC
TTTCTCTTCT TTGGCTGGGA ATATTGTTGT TTTATGAAAT CCATCTACAA TCAGTTGCAG TCAACATATT CTACCTAATG
GATTTGAAAT TTCTTTGTTC TCTCATTGAT TTCTTTGCTC TTTGTAGGAT TTAACACCGA TTCAACTCCA GGACGGTGAG
TTTGTTGGCA TTCTTCTTAG TATATACCTT ACTTTTGTTA TTCTTCCATA TGTATGTGTG ATAAGCAAGA AATAACCCTT
TATCATATTG AGATAATTTT GTATGATCTT ATTGAGACAA GTTCATTGTA AGTTAGCTAA AACAATGGTA AATAATTTCT
GACTATTTAT GGTTTGTATG TTCTGTTAGC GCTTAGCAAG ACATTTTCAG CGAAAAAGAA AAAGGGAAAG CTACGAAAGG
CTTGGGATGG GAGCAAAGTT ATTTATAACG TTGCATCGTG GGGTGCTACG GCCATAGGGT AGGTGGTTAC TCCAACCCCA
TCCTTTTTTC ATAATTAAGG AATGACTTGC ATTAATAATC TTAACATATA TTGCCCTTCT ATTTACCTGC TGTACCTAAA
GATTGCCTTG TGTGTCATCT TTATAGTTAT CATAGTTGTT TTTTTACATC TGGTATAACA AGAAAGTCGT TCTAAGTTAA
TTTTGTCCTC TTTTATTGGG CTGATAGTTT CATTTTTGCA TTTGAAATTC TTTACAGGAT ATATCAAAAC CCTGTTATTA
TTTCGGCCGC AACTAAAGCA TTCTGGACTT CTTGCCATGT TATATCGAAG CTTCTCTGAT TTGCTGCTTG GAGCAAAGTT
GTGATGTAGT TAGTAATTTA ACTCTTGTTC CGCTGCAATT TACTTGACGC CTCGGATTTC AAAATCAATT TCTTTGCACA
ACAAATCAAT TGATTTAGAA GAGTTTGACA TTGTAAATAT CAATTGATTT CAACAGAGTT TGACATTGTA AATATTTCTA
TTCAAATGTT TCCGCCTGTG TTCAAAACCT TAAACATAAT CTCCCTTCAC GTCTGAGAGC CTGGCTTATG TTTTTTCTCG
CCGATTTTAA TTGAACTCAT TCCATATTCC GCCACACCTT ATTTTGTGCT TTAACTTCGT TGAACTGATG TGATTCTGGC
ACTCTATAGA ACGTTATTCG TAA

>Vigan.02G111100.01
GTTGTTGTAA CGCAATGAGT AGACGGAACA ATTGGAGTAC ACGAAACCCA TCTTCGTAGA ATTGTGTTGT ATTTGTATTC
AAATGGAATC TCTTCTTTGG TTTCATTGAC AAACCACGCA CGGCCCAGAA CTCCGTCGCC ATCTATCGCC GTCGTGTTCG
TCACCGTCGT GGTCGCCGCC TCCTAAAACA CGGCACAACG AATCCAAAGT AAAGACCGTG TTTGGAAGCA TTTAATGTAA
ATCCCATGGG TACCAACCCT CTCTCTCTTC ATTAAACTAC GCAAATGGAT CTCAAAGCTT CGGCGGATCC GGACCCGGAC
CCGCTTCGCG TCAAGAGGAA GACCCTTGAG GCTGTGCTCT TGCAGTGTCA GAGAGCTCTC GAATTGATCA ACGCTGCTTC
TCCTTCATCT TCTGCTTCTG CTGAAGTCGA AGAAGAGGAT TGTCTGGCTG ACAGCGAAGC TGAGGCCATT GCGTCTACCG
ATCCTCTTGA CGACCAGTTA CGTGATATGC TCAAATCAAG AGTTGAATGC CCTGCCTTTC TTCAAAAGTT GGAGTGTGCT
CAGGCATCAG TTTCGCAGAA TATATATGAA GAAGGTAATT CTTGGGATTT GGTTGGTGAA AATGATCTCT GGGAAGGCCA
ACGTGATGAC TTAGACCAAG AAGATTATGT ACTTGTTAGA CAAGAGGATG TAGTTGAGGG CATCGCATGC TTCATGGCTG
CATATTTGCT ATCAATTAAG CAGACTAAGG ATTTAACACC GATTCAACTC CAGGACGCGC TTAGCAAGAC ATTTTCAGCG
AAAAAGAAAA AGGGAAAGCT ACGAAAGGCT TGGGATGGGA GCAAAGTTAT TTATAACGTT GCATCGTGGG GTGCTACGGC
CATAGGGATA TATCAAAACC CTGTTATTAT TTCGGCCGCA ACTAAAGCAT TCTGGACTTC TTGCCATGTT ATATCGAAGC
TTCTCTGATT TGCTGCTTGG AGCAAAGTTG TGATGTAGTT AGTAATTTAA CTCTTGTTCC GCTGCAATTT ACTTGACGCC
TCGGATTTCA AAATCAATTT CTTTGCACAA CAAATCAATT GATTTAGAAG AGTTTGACAT TGTAAATATC AATTGATTTC
AACAGAGTTT GACATTGTAA ATATTTCTAT TCAAATGTTT CCGCCTGTGT TCAAAACCTT AAACATAATC TCCCTTCACG
TCTGAGAGCC TGGCTTATGT TTTTTCTCGC CGATTTTAAT TGAACTCATT CCATATTCCG CCACACCTTA TTTTGTGCTT
TAACTTCGTT GAACTGATGT GATTCTGGCA CTCTATAGAA CGTTATTCGT AA

>Vigan.02G111100.01
ATGGATCTCA AAGCTTCGGC GGATCCGGAC CCGGACCCGC TTCGCGTCAA GAGGAAGACC CTTGAGGCTG TGCTCTTGCA
GTGTCAGAGA GCTCTCGAAT TGATCAACGC TGCTTCTCCT TCATCTTCTG CTTCTGCTGA AGTCGAAGAA GAGGATTGTC
TGGCTGACAG CGAAGCTGAG GCCATTGCGT CTACCGATCC TCTTGACGAC CAGTTACGTG ATATGCTCAA ATCAAGAGTT
GAATGCCCTG CCTTTCTTCA AAAGTTGGAG TGTGCTCAGG CATCAGTTTC GCAGAATATA TATGAAGAAG GTAATTCTTG
GGATTTGGTT GGTGAAAATG ATCTCTGGGA AGGCCAACGT GATGACTTAG ACCAAGAAGA TTATGTACTT GTTAGACAAG
AGGATGTAGT TGAGGGCATC GCATGCTTCA TGGCTGCATA TTTGCTATCA ATTAAGCAGA CTAAGGATTT AACACCGATT
CAACTCCAGG ACGCGCTTAG CAAGACATTT TCAGCGAAAA AGAAAAAGGG AAAGCTACGA AAGGCTTGGG ATGGGAGCAA
AGTTATTTAT AACGTTGCAT CGTGGGGTGC TACGGCCATA GGGATATATC AAAACCCTGT TATTATTTCG GCCGCAACTA
AAGCATTCTG GACTTCTTGC CATGTTATAT CGAAGCTTCT CTGA

>Vigan.02G111100.01
MDLKASADPD PDPLRVKRKT LEAVLLQCQR ALELINAASP SSSASAEVEE EDCLADSEAE AIASTDPLDD QLRDMLKSRV
ECPAFLQKLE CAQASVSQNI YEEGNSWDLV GENDLWEGQR DDLDQEDYVL VRQEDVVEGI ACFMAAYLLS IKQTKDLTPI
QLQDALSKTF SAKKKKGKLR KAWDGSKVIY NVASWGATAI GIYQNPVIIS AATKAFWTSC HVISKLL*