VIGGS:GBrowse

Vigan.02G100200.01

Basic Information:

Name:	Vigan.02G100200.01 Multiple alignment Variant Information
Position:	Chr02:8173652..8175000 (+ strand)
Length:	1349

Functional Information:

Description:	Similar to aquaporin TIP4-1-like. [XP_004498471.1, Cicer arietinum]
GO:	Biological Process: transport (GO:0006810)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: transporter activity (GO:0005215)
InterPro:	Major intrinsic protein (IPR000425)
	Major intrinsic protein, conserved site (IPR022357)
	Aquaporin-like (IPR023271)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:1.00,0.95,8.78,6.53,18.46,170.17,189.91,6.34
Arabidopsis thaliana homolog:	AT2G25810.1

Automatic updates:

Name:	NM_001255640 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max aquaporin TIP4-2 (LOC100793258), mRNA.
PubMed ID:	30634702 NCBI(pubmed)
PubMed ID:	27818669 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:8173652..8173948 (+ strand)
Length:	297
Type:	five_prime_UTR

Position:	Chr02:8173949..8174075 (+ strand)
Length:	127
Type:	CDS

Position:	Chr02:8174164..8174402 (+ strand)
Length:	239
Type:	CDS

Position:	Chr02:8174479..8174853 (+ strand)
Length:	375
Type:	CDS

Position:	Chr02:8174854..8175000 (+ strand)
Length:	147
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.02G100200.01 class=Sequence position=Chr02:8173652..8175000 (+ strand)
CCTCATTATT AATAATAAAA AAATTATATT TTGACATTTT ATTAGAAATA AAAACTGGTT GACAATATTA TTTTCATAAT
ATATACATCA ATGATTGGAC TTGAATAATA GAAAATGTGA TTAAAATACG GTGTTATTAA TACATAATTC TCGCTAGCGT
ATAATGTTGC AGGTCAACGG GTGTAGTCCA ACAGGGTTGC AGTAACAGGC CTATCTGGTT TCATATAAAT AACATGACAA
CATTGTTTTT TTGGTTACGC CGAGTGTGAA GATTGTTTGT GGAAGAAAGG ATCAATCATG GCGAAAATCG CTCTTGGAAG
CACCAGCGAG GTCACTCAGC CAGATTGCAT TCAAGCCCTC GTCGTTGAAT TCATCGCCAC CTTCCTCTTC GTCTTTGTTG
GCGTTGCTTC TTCCATGCTC ACTGGTATTT ATATATGTAT ACTCTACTAT TGTATAACAC AAAGCAATAA TCTTTGATAC
TTATATACCT ATTTTTCCTT ACTGTGCATC AGAGAAGCTC GGTGGGGATG CATTAGTGGG GTTGTTTGTT GTGGCCGTGG
CACATGCACT GGTGGTGGCC GTCATGATCT CCGCTGCACA CATCTCCGGT GGCCACCTGA ACCCCGCCGT GACTATTGGT
CTCCTTGCCG GCGGTCACAT CACCGTGTTT CGTTCCATCC TCTATTGGAT TGATCAGTTA GTCGCATCTG CGGCAGCTTC
TTATCTCCTT TACTTCCTCT CTGGAGGACA GGTAATGAAG TTCAAGCTAA TCGAATCTAT ATTTTTTATC TGTTTATTTA
TTTTTGTTAA CGGTTTCTTT GTTTCAGACA ACTCCGGTTC ATACGCTGGC CGCCGGAATA GGGTACGGTC AAGGGGTAAT
TTGGGAGATT GTGTTGACCT TTTCTTTGCT GTTCACTGTC TACGCCACCA TGGTAGATCC AAAGAAGGGA CCACTTGCTG
GGCTTGGCCC GACACTAGTT GGGTTTGTCG TTGGGGCCAA TATCCTCGCT GGTGGAGCTT ACTCCGCCGC TTCTATGAAC
CCAGCGCGGT CTTTCGGGCC TGCCTTGGTT ACTGGCAACT GGACCGATCA TTGGGTTTAC TGGGTTGGGC CTCTCGTTGG
TGGTGGGCTT GCCGGTTTCA TCTATGAAAC TTTCTTCATT GATCGATCTC ACGTTCCTCT TCCTCGTGAT GAAGAATCCT
AATGAGGAGG ACTGTCAGCT TCGACTTTGC TTTCTTCAGT CAGATTATTA AATAGTCTTT TTTTGTGTCT ATTTGTATCT
TTGTTTTCTT TATGTGTTTT TTTTTCCAGC TCGGTTTATG TGTAATATAT CTCCCAAAAT AAGATCGCA

[show][hide][copy]TRANSCRIPT

>Vigan.02G100200.01
CCTCATTATT AATAATAAAA AAATTATATT TTGACATTTT ATTAGAAATA AAAACTGGTT GACAATATTA TTTTCATAAT
ATATACATCA ATGATTGGAC TTGAATAATA GAAAATGTGA TTAAAATACG GTGTTATTAA TACATAATTC TCGCTAGCGT
ATAATGTTGC AGGTCAACGG GTGTAGTCCA ACAGGGTTGC AGTAACAGGC CTATCTGGTT TCATATAAAT AACATGACAA
CATTGTTTTT TTGGTTACGC CGAGTGTGAA GATTGTTTGT GGAAGAAAGG ATCAATCATG GCGAAAATCG CTCTTGGAAG
CACCAGCGAG GTCACTCAGC CAGATTGCAT TCAAGCCCTC GTCGTTGAAT TCATCGCCAC CTTCCTCTTC GTCTTTGTTG
GCGTTGCTTC TTCCATGCTC ACTGAGAAGC TCGGTGGGGA TGCATTAGTG GGGTTGTTTG TTGTGGCCGT GGCACATGCA
CTGGTGGTGG CCGTCATGAT CTCCGCTGCA CACATCTCCG GTGGCCACCT GAACCCCGCC GTGACTATTG GTCTCCTTGC
CGGCGGTCAC ATCACCGTGT TTCGTTCCAT CCTCTATTGG ATTGATCAGT TAGTCGCATC TGCGGCAGCT TCTTATCTCC
TTTACTTCCT CTCTGGAGGA CAGACAACTC CGGTTCATAC GCTGGCCGCC GGAATAGGGT ACGGTCAAGG GGTAATTTGG
GAGATTGTGT TGACCTTTTC TTTGCTGTTC ACTGTCTACG CCACCATGGT AGATCCAAAG AAGGGACCAC TTGCTGGGCT
TGGCCCGACA CTAGTTGGGT TTGTCGTTGG GGCCAATATC CTCGCTGGTG GAGCTTACTC CGCCGCTTCT ATGAACCCAG
CGCGGTCTTT CGGGCCTGCC TTGGTTACTG GCAACTGGAC CGATCATTGG GTTTACTGGG TTGGGCCTCT CGTTGGTGGT
GGGCTTGCCG GTTTCATCTA TGAAACTTTC TTCATTGATC GATCTCACGT TCCTCTTCCT CGTGATGAAG AATCCTAATG
AGGAGGACTG TCAGCTTCGA CTTTGCTTTC TTCAGTCAGA TTATTAAATA GTCTTTTTTT GTGTCTATTT GTATCTTTGT
TTTCTTTATG TGTTTTTTTT TCCAGCTCGG TTTATGTGTA ATATATCTCC CAAAATAAGA TCGCA

[show][hide][copy]CDS

>Vigan.02G100200.01
ATGGCGAAAA TCGCTCTTGG AAGCACCAGC GAGGTCACTC AGCCAGATTG CATTCAAGCC CTCGTCGTTG AATTCATCGC
CACCTTCCTC TTCGTCTTTG TTGGCGTTGC TTCTTCCATG CTCACTGAGA AGCTCGGTGG GGATGCATTA GTGGGGTTGT
TTGTTGTGGC CGTGGCACAT GCACTGGTGG TGGCCGTCAT GATCTCCGCT GCACACATCT CCGGTGGCCA CCTGAACCCC
GCCGTGACTA TTGGTCTCCT TGCCGGCGGT CACATCACCG TGTTTCGTTC CATCCTCTAT TGGATTGATC AGTTAGTCGC
ATCTGCGGCA GCTTCTTATC TCCTTTACTT CCTCTCTGGA GGACAGACAA CTCCGGTTCA TACGCTGGCC GCCGGAATAG
GGTACGGTCA AGGGGTAATT TGGGAGATTG TGTTGACCTT TTCTTTGCTG TTCACTGTCT ACGCCACCAT GGTAGATCCA
AAGAAGGGAC CACTTGCTGG GCTTGGCCCG ACACTAGTTG GGTTTGTCGT TGGGGCCAAT ATCCTCGCTG GTGGAGCTTA
CTCCGCCGCT TCTATGAACC CAGCGCGGTC TTTCGGGCCT GCCTTGGTTA CTGGCAACTG GACCGATCAT TGGGTTTACT
GGGTTGGGCC TCTCGTTGGT GGTGGGCTTG CCGGTTTCAT CTATGAAACT TTCTTCATTG ATCGATCTCA CGTTCCTCTT
CCTCGTGATG AAGAATCCTA A

[show][hide][copy]PROTEIN

>Vigan.02G100200.01
MAKIALGSTS EVTQPDCIQA LVVEFIATFL FVFVGVASSM LTEKLGGDAL VGLFVVAVAH ALVVAVMISA AHISGGHLNP
AVTIGLLAGG HITVFRSILY WIDQLVASAA ASYLLYFLSG GQTTPVHTLA AGIGYGQGVI WEIVLTFSLL FTVYATMVDP
KKGPLAGLGP TLVGFVVGAN ILAGGAYSAA SMNPARSFGP ALVTGNWTDH WVYWVGPLVG GGLAGFIYET FFIDRSHVPL
PRDEES*