GBrowse Details

Vigan.02G096900.01

Basic Information:
Name: Vigan.02G096900.01
Multiple alignment
Variant Information
Position: Chr02:7830292..7835507 (+ strand)
Length: 5216
Functional Information:
Description: Similar to Uncharacterized protein. [I1K992, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
Molecular Function: aspartic-type endopeptidase activity (GO:0004190)
InterPro: Presenilin/signal peptide peptidase (IPR006639)
Peptidase A22B, signal peptide peptidase (IPR007369)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:52.52,17.11,33.28,21.52,67.98,79.54,54.94,27.03
Arabidopsis thaliana homolog: AT2G03120.1
Automatic updates:
Name: NM_001254180 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max minor histocompatibility antigen H13-like (LOC100807073), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:7830292..7830645 (+ strand)
Length: 354
Type: five_prime_UTR
Position: Chr02:7830646..7830685 (+ strand)
Length: 40
Type: CDS
Position: Chr02:7831011..7831126 (+ strand)
Length: 116
Type: CDS
Position: Chr02:7831210..7831361 (+ strand)
Length: 152
Type: CDS
Position: Chr02:7831468..7831553 (+ strand)
Length: 86
Type: CDS
Position: Chr02:7832145..7832272 (+ strand)
Length: 128
Type: CDS
Position: Chr02:7832517..7832567 (+ strand)
Length: 51
Type: CDS
Position: Chr02:7832942..7833028 (+ strand)
Length: 87
Type: CDS
Position: Chr02:7833160..7833229 (+ strand)
Length: 70
Type: CDS
Position: Chr02:7833994..7834130 (+ strand)
Length: 137
Type: CDS
Position: Chr02:7834327..7834404 (+ strand)
Length: 78
Type: CDS
Position: Chr02:7835078..7835152 (+ strand)
Length: 75
Type: CDS
Position: Chr02:7835153..7835507 (+ strand)
Length: 355
Type: three_prime_UTR

>Vigan.02G096900.01 class=Sequence position=Chr02:7830292..7835507 (+ strand)
TTTTGGTCCT AACCTCAGTA ACTTCTCTCT CTCATTATCA CGGTAAATCT TAAAACCCTA ATCCTTCTGC AATTCTTTTT
TATTTCCATT TTCCAAAATC AATTTCTCTC TCCCAAATCA ATTTCTCTCT CTATCTCTCT TCGATCTGCT TTGCTGTTGG
GGCCAACCGC TCCTGCAATT CCCGTTTGCG ATTGGAGGTT GCCCTCTTTC CTTTCTTTTT TTAAGATTGA TCTACGATTT
TGTTTCTTGT TTTTCAATTT TTGTGATTTG TGCTGTTTTT TAATCGCAGT GGAGGCCATT CTCGCAACCA GAGTTCATTA
GATCCAAAAT TGTTCAGAAA AGAGGTTAAG GAGGATGAAG AAAACCGAAC GAATTGCGAA TTTGGCTTTG ACAGGTTTGA
TTCTCCTGTT TCATGCTTCA GTTGATACTC TTATTGAGCA ACCTTCGAGT TGCTGTGTGA TTCATGACGA GCTTTTTTGG
CATTCTGGCA TAATGTAGTT GCTGTACATT CATTCTCAAA TGAATTGAAT TGAATTTTGA TTCTGTATTC TAAAATTTTA
GGGTATCGAA CTTTGGCAGC TGGGCTTTGT TTGGTTTAAT AATACTTGTT TGTTTATTAA TAATCTTAAT AATGTCAATG
CGTGAGTGAT AGAAGGAGAG TGAGTCTCTT TTTGTTCCTC AATTTCTCAA TATTATTGCC ATTTTATTTG TAATCACAGG
TTTATCCTTA GCACCGCTTG TTGTGAAAGT AGATCCGAAT TTAAATGTTA TTTTGACTGC TTGTCTCACC GTGTTCGTGG
GATGTTACCG CTCTGTCAAA CCAACACCAC CAACTGTGAG TAGTTAATCT GCTTATTCCC TTCTTTATAT TGTGTTCTTT
GGTGGTTAAT CTGATTTCTG TTGCAAATAA TTTTACAGGA GACAATGTCG AATGAACATG CCATGCGTTT CCCCTTTGTT
GGGAGTGCGA TGTTATTGTC ACTGTTCTTA CTCTTCAAGT TTCTATCAAA GGACCTTGTG AACACTGTAT TGACAGGCTA
CTTCTTTGTA CTTGGGATTG TTGCGCTTTC GTAAGTTCTT TTCCTCACGG GGGATGTCCT TGTCATAGTA TCGATAAAAT
CTTATTGTTA TAATTTTTTG TATTTTATTA AACACTTTGT TTTCCACTGT CTACAGGGCA ACATTATTAC CGTTTATTAA
ACGTTTTCTG CCAAAGCATT GGAATGAGGA CGTCATAGTC TGGCGATTTC CATATTTCCG ATGTATGTGA CTCCCTGGCT
ACTGTATTTT TCTTATTGTT GGTGATAGTA TGTTTTTCTC TGAACTGCGG TGCATCTAGT TCCAAATTCG AATTAATGCG
GCCTCTGGGC ACTTGTACTC GTTGTGATGT GCCCAATGAA ATATGGAAAA TGCTCGAGGC CTTTATTTAT TGACAATTCA
TTTATTTTTT CTTTTTAAAT AAATTTAGTT TTAACATGAT TTTGAACTAT TTTCTAGAGA AGGCATTAGA AATTCAACCC
TTTAGACAAA ATAAAGGTAA ATGCATGCAT ACCCCATGGA CCCATATGGC TTGTCACAAT TATCAAAAGG GGAGTCATTT
TCGGGCTATT GTGAACTGTT GACTTAATTT TTAAGTTCTG TTGATCAACT ATAATCACCA ATGTCTTTGG CCATTTATTA
TGCTTTACTG TCTATGTTGT TGGCTTTTTA ATTCTTTATT TATTATCATT AGACGATTAT CCTCATGATT TGCATTGTAT
GTGTTGTTAG TTATTGTTAC TTGATCAAGT TGAGATTAAT CCTCCTCTAT CACGCATAAT ATATATTTTT CTGCTTACAC
TTCTCTTATA CAGCTGTGGA GATTGAGTTT ACAAGGTCAC AGGTCGTTGC TGGCATCCCT GGGACATTCT TTTGTGCTTG
GTATGCTTTG CGGAAGCATT GGCTGGCAAA TAATATCTTG GGTCTTGCTT TCTGTATTCA GGTCTGTCAA TTTTCTATAT
ATAAATTGTC CTATCAACTA CTTTTTATGA TAAAGTTTCA TCATCAATTT ATTATATATT TATATAAAAT TTGTGGTACC
CACTTTTTGT GGTTTGAACT AATAATTTTT GTGAATTTTG ATAAATAAAT TAAATCATTC TATCATTTAT GCTATCAATG
TGTAGAATTA TGAATCAGTT TTTTATTACT AGAATTTACA CCAATGTACA TTTTATCACT TGCAGGGAAT TGAAATGCTT
TCTCTTGGGT CTTTCAAGAC TGGTGCTATT CTCTTGGTAG GTGTTTTCTT TCTTTTGTAA TTGATGGTGC TCAAAGCGTT
TATCTAAGAA GACATGTATA CCAACAATAA TTTTTCTGTG GATAAACCAG ATCATATGTC TGTGTCGTTC AAACATTTAC
TCTTTTCTAT TGTAATAAAA TACAATTAAA AGGCCTGTGG ATTTTGACTT ACTCTATCAT CTGATTCATT CATATTCTTT
TTTACCCTTT TAATCGAATA CAAGCTCATA AAATGCATGA GAAAATTATA TTTATTCCCT ACAGATATGA TAATTTAGTC
TTATTTTCCA AAAGATAGAA GACTTTTTTG TTGTACAATT TTTTGTTTTA TATATGGTCG TTGACTTTCT TACATTCTTG
TATTTTACAG GCTGGTCTAT TTGTATATGA CATATTCTGG GTTTTCTTCA CTCCAGTAAT GGTCAGCGTT GCAAAATCAT
TTGATGCTCC AATAAAGGTT AAAACTTTAG CTAAATGAAA TGGAAATTTC TCTTTTGAAC CTTTTTTTAA TATTGTGTAT
TTACTTGGAT ATTAGATGGA AATCGTAATA AATTTCTTCC TAATATTGTA ATTCAAACGA TTTTGCAGCT TTTGTTCCCC
ACAGCAGATG CTGTAAGGCC ATTTTCAATG CTTGGTCTTG GTGATATTGT TATCCCTGGT AGGATGACTC TTCATTTATG
TATTGATATA TTTATTTTGT GACGTTGCTC TGTAATAATA CAGTTCAGCT TTTAATTTGT ATCTTGTACC AGATTTTGTT
AACCTATGCT TAGAAGATTT TGCGAAAATG GTATGAAAAA GATGAGGGAG TAAATGGAAA GTAATCTGCA TTTCACTTTG
CTGTCATGTA GTAATCCAAG TGAATTATTT TAATATACTT CTCTATTTTT GGAGGAGCAA GAGTGAGAGT TTGAGGGGTA
GCTCTTTCAG ATTTTGTCAT CCCCTACACA AATTTTTAAG GTCCCTTATG AGGAGACTTG AAGCTAAATT TCAAAATAAA
AAACTCTTGT GGTCCCACTC CCCTGTCATA TCAATGGTCT TTTCGGCGTT CTAGTTTAGT GACATTGTTC TGACCCTTAT
TTTTCCCATT ATTATGCATA ATTGCTTTGT TGGTCTAAAC TCTTAACTTT GTTGAGTTTA CTTAACTGAT TAAACTTGGT
GACTGTATTT TAACGAGTGA TTTTTTACAT ATTTGTTGCA TTCATAAATC CAAATACTAT ATTTAAATGG TAAGTCACAT
ATAGTAGATG GAACTTCATG TTTTTTCTTG TTATTAGTTT ACATTACAAC TTTGAGTTAG AGTGATAAAT AAGTTTTATC
CCTACCTGTA TATCTTTGAC AATAATGAAG GAAAAGTTTC TCTCTAGTAA TTTTGTTGTT TGTTACTTCA ATTTATTTTG
ACTACGTATT TTTTTGCTTC AGGTATTTTT GTAGCATTGG CTTTGCGGTT TGATGTATCC AGAGGAAAAC AGCCCCAATA
TTTCAAAAGT GCATTTTTAG GATACACTGT TGGCTTGGTC CTTACAATTG TTGTGATGAA CTGGTTTCAG GCTGCACAGG
TAACTGATCT GTTTCATGTA TTTTTTTTGT AGCTTTGGGG AATGTGTGTG GGGTTGTAGT CACTAATCAT TAACGCCAAA
TAATATTCTA AATTTCTAAT ACATTATGGC TGGCTGAACT TGTGGTATAA TCATGGACTT TTGGTGATCA AACTTCTAAA
CTAATTTTTG CCCTTGATTG TATTCCTTTT GCCAGCCTGC TCTTTTGTAT ATTGTACCTT CTGTAATTGG ATTCTTGGCT
GCTCATTGCA TATGGAATGG TGATGTCAAA CAGGTTTGTT TCTTTGCTTA TATTTTTTGT TTCTTCATTC TCATATCAAT
GTTAGTCCAT CCTTTTTTAT GTTTCTAGTG TTCTTTCAAT ATTAGTTTCG CTGGAGTATA ACTTACTTAA TTTGTATTAA
ATACTATGTA TAATGAAAAT ATGCAAATTT GATTTATCAC GTTTTGAACC CTATCAATGA AACCATAGGA TGACCATCAT
TAATATTGCT TTAAAACTTT TAACAATTTT TTATTAGGAG TCGTGAAAGA GTCACTAATA TTGTTGGGAA TTTAGTCATT
GTGACAAAAG ACTAATCTTA AGTCCTATTG ACTATTACTT GACAAGATCT TTTGCACCTG TTTTCTACTA TCTATATATA
CCTTTAACTA GATTGTTGAA AATCGTTTTC ACATTTAAAG GTGTCCATGT TTAGTTTATG AATACCAGCA ATTTAAGAAA
ACCCACGCAG AAGATGAACT TTGTTTTCTA CCTTCTAAAC GAAACTTTGC TTTGTTATGA ACAGTTTTAA AAGGTTCGTG
CAATATGTTT TTGTTACAGT GTATTATGAC TGTTTTGAAA GTATTGGATA TATGAATGTT ATTTTATTTA GTAGTTAAAA
CTTGAAGATG GTTAGGATTT ATGCGTACCA TGTATTCTAA CAGTTTTTCA TACTCTATGA ATGCAGTTGT TGGAGTTCGA
TGAGTCAAAG ACTGCCAATT CACCTCAAGA GGATGACAAG TCCAGCAAAA AGGTTGAATA AGTTGATGCA TGCCCAATAC
CAATACTTCC TAGTCAGAGA AGAAATACTG TTTTTTTTTT CTTCTGAAAA CACCGTTACA TTTAAAGCTA ACTTATTCAG
CAGCACCTCT GTAACTGATT GTGATTTTAA AAAAAATGTA TTAGTTTTAT CTTTCAAATT GGCATTTTGC TTTTACTGCC
TGTTTACTTT GGGTTTCCAT GGCAAACTTT CTGTTATCGG CACACACATG CTTTTTTTTT GGTGTTTATC TCTACCTAAC
TAATTTTGAT GTTTATCTAT ATTGAAATTG CACCCATCAC AGTCATAATC AGCCTAAGTT TGAAAATGAC ATTTCAGTGG
TGTTCTGTAA ATAATT

>Vigan.02G096900.01
TTTTGGTCCT AACCTCAGTA ACTTCTCTCT CTCATTATCA CGGTAAATCT TAAAACCCTA ATCCTTCTGC AATTCTTTTT
TATTTCCATT TTCCAAAATC AATTTCTCTC TCCCAAATCA ATTTCTCTCT CTATCTCTCT TCGATCTGCT TTGCTGTTGG
GGCCAACCGC TCCTGCAATT CCCGTTTGCG ATTGGAGGTT GCCCTCTTTC CTTTCTTTTT TTAAGATTGA TCTACGATTT
TGTTTCTTGT TTTTCAATTT TTGTGATTTG TGCTGTTTTT TAATCGCAGT GGAGGCCATT CTCGCAACCA GAGTTCATTA
GATCCAAAAT TGTTCAGAAA AGAGGTTAAG GAGGATGAAG AAAACCGAAC GAATTGCGAA TTTGGCTTTG ACAGGTTTAT
CCTTAGCACC GCTTGTTGTG AAAGTAGATC CGAATTTAAA TGTTATTTTG ACTGCTTGTC TCACCGTGTT CGTGGGATGT
TACCGCTCTG TCAAACCAAC ACCACCAACT GAGACAATGT CGAATGAACA TGCCATGCGT TTCCCCTTTG TTGGGAGTGC
GATGTTATTG TCACTGTTCT TACTCTTCAA GTTTCTATCA AAGGACCTTG TGAACACTGT ATTGACAGGC TACTTCTTTG
TACTTGGGAT TGTTGCGCTT TCGGCAACAT TATTACCGTT TATTAAACGT TTTCTGCCAA AGCATTGGAA TGAGGACGTC
ATAGTCTGGC GATTTCCATA TTTCCGATCT GTGGAGATTG AGTTTACAAG GTCACAGGTC GTTGCTGGCA TCCCTGGGAC
ATTCTTTTGT GCTTGGTATG CTTTGCGGAA GCATTGGCTG GCAAATAATA TCTTGGGTCT TGCTTTCTGT ATTCAGGGAA
TTGAAATGCT TTCTCTTGGG TCTTTCAAGA CTGGTGCTAT TCTCTTGGCT GGTCTATTTG TATATGACAT ATTCTGGGTT
TTCTTCACTC CAGTAATGGT CAGCGTTGCA AAATCATTTG ATGCTCCAAT AAAGCTTTTG TTCCCCACAG CAGATGCTGT
AAGGCCATTT TCAATGCTTG GTCTTGGTGA TATTGTTATC CCTGGTATTT TTGTAGCATT GGCTTTGCGG TTTGATGTAT
CCAGAGGAAA ACAGCCCCAA TATTTCAAAA GTGCATTTTT AGGATACACT GTTGGCTTGG TCCTTACAAT TGTTGTGATG
AACTGGTTTC AGGCTGCACA GCCTGCTCTT TTGTATATTG TACCTTCTGT AATTGGATTC TTGGCTGCTC ATTGCATATG
GAATGGTGAT GTCAAACAGT TGTTGGAGTT CGATGAGTCA AAGACTGCCA ATTCACCTCA AGAGGATGAC AAGTCCAGCA
AAAAGGTTGA ATAAGTTGAT GCATGCCCAA TACCAATACT TCCTAGTCAG AGAAGAAATA CTGTTTTTTT TTTCTTCTGA
AAACACCGTT ACATTTAAAG CTAACTTATT CAGCAGCACC TCTGTAACTG ATTGTGATTT TAAAAAAAAT GTATTAGTTT
TATCTTTCAA ATTGGCATTT TGCTTTTACT GCCTGTTTAC TTTGGGTTTC CATGGCAAAC TTTCTGTTAT CGGCACACAC
ATGCTTTTTT TTTGGTGTTT ATCTCTACCT AACTAATTTT GATGTTTATC TATATTGAAA TTGCACCCAT CACAGTCATA
ATCAGCCTAA GTTTGAAAAT GACATTTCAG TGGTGTTCTG TAAATAATT

>Vigan.02G096900.01
ATGAAGAAAA CCGAACGAAT TGCGAATTTG GCTTTGACAG GTTTATCCTT AGCACCGCTT GTTGTGAAAG TAGATCCGAA
TTTAAATGTT ATTTTGACTG CTTGTCTCAC CGTGTTCGTG GGATGTTACC GCTCTGTCAA ACCAACACCA CCAACTGAGA
CAATGTCGAA TGAACATGCC ATGCGTTTCC CCTTTGTTGG GAGTGCGATG TTATTGTCAC TGTTCTTACT CTTCAAGTTT
CTATCAAAGG ACCTTGTGAA CACTGTATTG ACAGGCTACT TCTTTGTACT TGGGATTGTT GCGCTTTCGG CAACATTATT
ACCGTTTATT AAACGTTTTC TGCCAAAGCA TTGGAATGAG GACGTCATAG TCTGGCGATT TCCATATTTC CGATCTGTGG
AGATTGAGTT TACAAGGTCA CAGGTCGTTG CTGGCATCCC TGGGACATTC TTTTGTGCTT GGTATGCTTT GCGGAAGCAT
TGGCTGGCAA ATAATATCTT GGGTCTTGCT TTCTGTATTC AGGGAATTGA AATGCTTTCT CTTGGGTCTT TCAAGACTGG
TGCTATTCTC TTGGCTGGTC TATTTGTATA TGACATATTC TGGGTTTTCT TCACTCCAGT AATGGTCAGC GTTGCAAAAT
CATTTGATGC TCCAATAAAG CTTTTGTTCC CCACAGCAGA TGCTGTAAGG CCATTTTCAA TGCTTGGTCT TGGTGATATT
GTTATCCCTG GTATTTTTGT AGCATTGGCT TTGCGGTTTG ATGTATCCAG AGGAAAACAG CCCCAATATT TCAAAAGTGC
ATTTTTAGGA TACACTGTTG GCTTGGTCCT TACAATTGTT GTGATGAACT GGTTTCAGGC TGCACAGCCT GCTCTTTTGT
ATATTGTACC TTCTGTAATT GGATTCTTGG CTGCTCATTG CATATGGAAT GGTGATGTCA AACAGTTGTT GGAGTTCGAT
GAGTCAAAGA CTGCCAATTC ACCTCAAGAG GATGACAAGT CCAGCAAAAA GGTTGAATAA 

>Vigan.02G096900.01
MKKTERIANL ALTGLSLAPL VVKVDPNLNV ILTACLTVFV GCYRSVKPTP PTETMSNEHA MRFPFVGSAM LLSLFLLFKF
LSKDLVNTVL TGYFFVLGIV ALSATLLPFI KRFLPKHWNE DVIVWRFPYF RSVEIEFTRS QVVAGIPGTF FCAWYALRKH
WLANNILGLA FCIQGIEMLS LGSFKTGAIL LAGLFVYDIF WVFFTPVMVS VAKSFDAPIK LLFPTADAVR PFSMLGLGDI
VIPGIFVALA LRFDVSRGKQ PQYFKSAFLG YTVGLVLTIV VMNWFQAAQP ALLYIVPSVI GFLAAHCIWN GDVKQLLEFD
ESKTANSPQE DDKSSKKVE*